Regulon of RhiR in Rhizobium etli CFN 42

Properties
Regulator type:	Transcription factor
TF locus tag:	RHE_PF00288
Regulator family:	LacI
Regulation mode:
Biological process:	Rhamnogalacturonides utilization
Effector:	Rhamogalacturonate oligosaccharides
Regulog:	RhiR - Rhizobiales
Statistics of regulated genes:
- Genes	7
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - Rhamogalacturonate oligosaccharides
By pathway - Rhamnogalacturonides utilization

Regulated operons
	Locus Tag	Name	Function
Position: -171 Score: 5.9 Sequence: GCATGAAAATCTTTTCATTC Position: -30 Score: 6.2 Sequence: TGATGAAAATGTTTTCATGG Locus tag: RHE_PF00297 Name: rhiL Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
	RHE_PF00297	rhiL	Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Position: -214 Score: 6.2 Sequence: CCATGAAAACATTTTCATCA Position: -73 Score: 5.9 Sequence: GAATGAAAAGATTTTCATGC Locus tag: RHE_PF00296 Name: rhiX Funciton: hypothetical protein Locus tag: RHE_PF00295 Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) Locus tag: RHE_PF00294 Name: pgl Funciton: Polygalacturonase (EC 3.2.1.15) Locus tag: RHE_PF00293 Name: rhiK Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein Locus tag: RHE_PF00292 Name: rhiG Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2 Locus tag: RHE_PF00291 Name: rhiF Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
	RHE_PF00296	rhiX	hypothetical protein
	RHE_PF00295	rhiN	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
	RHE_PF00294	pgl	Polygalacturonase (EC 3.2.1.15)
	RHE_PF00293	rhiK	Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
	RHE_PF00292	rhiG	Putatuve rhamnogalacturonides ABC transporter, permease component 2
	RHE_PF00291	rhiF	Putatuve rhamnogalacturonides ABC transporter, permease component 1

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD