Regulon of NtrC in Rhizobium sp. NGR234
| Regulator type: | Transcription factor |
| TF locus tag: | NGR_c12970 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -297
Score: 4.4 Sequence: CGCACAAAATTTCATCA
Position: -269
Score: 3.8 Sequence: TGCCTATTTCTGAGGCA
Locus tag: NGR_b15160
Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: NGR_b15170
Name: nrtB Funciton: Nitrate ABC transporter, permease component
Locus tag: NGR_b15180
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component |
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nrtA
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Nitrate ABC transporter, substrate-binding component
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nrtB
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Nitrate ABC transporter, permease component
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nrtC
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Nitrate ABC transporter, ATP-binding component
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Position: -299
Score: 4.1 Sequence: TGCCCATCAAATGGGCA
Position: -269
Score: 3.9 Sequence: AGGCTAATATTTGGTCA
Locus tag: NGR_b17280
Name: narK Funciton: Nitrate/nitrite antiporter |
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narK
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Nitrate/nitrite antiporter
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Position: -338
Score: 3.8 Sequence: CGCTGCTTTTTTAAGCA
Position: -303
Score: 4.3 Sequence: CGCACAATTATTGACCA
Locus tag: NGR_b11400
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: NGR_b11390
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: NGR_b11380
Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: NGR_b11370
Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Locus tag: NGR_b11360
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nrtC
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Nitrate ABC transporter, ATP-binding component
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nasA
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -287
Score: 4.3 Sequence: TGATGACTTATTATGCA
Position: -255
Score: 4.1 Sequence: TGCTCAAATAACAGGCT
Locus tag: NGR_c14750
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: NGR_c14740
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -25
Score: 4 Sequence: TGTCTAAAAATAGTGCA
Locus tag: NGR_c12950
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: NGR_c12960
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: NGR_c12970
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -286
Score: 4.7 Sequence: TGATCATTTTATAAGCA
Position: -265
Score: 4.6 Sequence: TGCACAAATTATGGGCG
Locus tag: NGR_b03900
Name: uctA Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: NGR_b03890
Name: uctB Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: NGR_b03880
Name: uctC Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: NGR_b03870
Name: speB Funciton: Agmatinase (EC 3.5.3.11)
Locus tag: NGR_b03860
Name: NGR_b03860 Funciton: Hypothetical protein |
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uctA
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Urea carboxylase-related ABC transporter, substrate-binding component
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uctB
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Urea carboxylase-related ABC transporter, permease component
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uctC
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Urea carboxylase-related ABC transporter, ATP-binding component
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speB
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Agmatinase (EC 3.5.3.11)
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NGR_b03860
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Hypothetical protein
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Position: -218
Score: 3.9 Sequence: TGCCTGTTTTTTAATCT
Locus tag: NGR_c31500
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: NGR_c31490
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |