Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_c12970
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 21
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -297
Score: 4.4
Sequence: CGCACAAAATTTCATCA
Position: -269
Score: 3.8
Sequence: TGCCTATTTCTGAGGCA
Locus tag: NGR_b15160
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: NGR_b15170
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: NGR_b15180
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
NGR_b15160
nrtA
Nitrate ABC transporter, substrate-binding component
NGR_b15170
nrtB
Nitrate ABC transporter, permease component
NGR_b15180
nrtC
Nitrate ABC transporter, ATP-binding component
Position: -299
Score: 4.1
Sequence: TGCCCATCAAATGGGCA
Position: -269
Score: 3.9
Sequence: AGGCTAATATTTGGTCA
Locus tag: NGR_b17280
Name: narK
Funciton: Nitrate/nitrite antiporter
NGR_b17280
narK
Nitrate/nitrite antiporter
Position: -338
Score: 3.8
Sequence: CGCTGCTTTTTTAAGCA
Position: -303
Score: 4.3
Sequence: CGCACAATTATTGACCA
Locus tag: NGR_b11400
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: NGR_b11390
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: NGR_b11380
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: NGR_b11370
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Locus tag: NGR_b11360
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
NGR_b11400
nrtC
Nitrate ABC transporter, ATP-binding component
NGR_b11390
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
NGR_b11380
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
NGR_b11370
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
NGR_b11360
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -287
Score: 4.3
Sequence: TGATGACTTATTATGCA
Position: -255
Score: 4.1
Sequence: TGCTCAAATAACAGGCT
Locus tag: NGR_c14750
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: NGR_c14740
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
NGR_c14750
glnB
Nitrogen regulatory protein P-II
NGR_c14740
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -25
Score: 4
Sequence: TGTCTAAAAATAGTGCA
Locus tag: NGR_c12950
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: NGR_c12960
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: NGR_c12970
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
NGR_c12950
nifR3
Predicted oxidoreductase, FAD binding
NGR_c12960
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
NGR_c12970
ntrC
Nitrogen regulation protein NR(I), Fis family
Position: -286
Score: 4.7
Sequence: TGATCATTTTATAAGCA
Position: -265
Score: 4.6
Sequence: TGCACAAATTATGGGCG
Locus tag: NGR_b03900
Name: uctA
Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: NGR_b03890
Name: uctB
Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: NGR_b03880
Name: uctC
Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: NGR_b03870
Name: speB
Funciton: Agmatinase (EC 3.5.3.11)
Locus tag: NGR_b03860
Name: NGR_b03860
Funciton: Hypothetical protein
NGR_b03900
uctA
Urea carboxylase-related ABC transporter, substrate-binding component
NGR_b03890
uctB
Urea carboxylase-related ABC transporter, permease component
NGR_b03880
uctC
Urea carboxylase-related ABC transporter, ATP-binding component
NGR_b03870
speB
Agmatinase (EC 3.5.3.11)
NGR_b03860
NGR_b03860
Hypothetical protein
Position: -218
Score: 3.9
Sequence: TGCCTGTTTTTTAATCT
Locus tag: NGR_c31500
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: NGR_c31490
Name: amtB
Funciton: Ammonium transporter
NGR_c31500
glnK
Nitrogen regulatory protein P-II
NGR_c31490
amtB
Ammonium transporter
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