Profile of regulator NtrC in Rhizobiales
Properties
| Regulator family: |
Fis |
| Regulation mode: |
activator (repressor) |
| Biological process: |
Nitrogen assimilation |
| Effector: |
Phosphorylated NtrB, signal histidine kinase |
| Regulog: |
NtrC - Rhizobiales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Sinorhizobium meliloti 1021
|
|
SMb20436 |
narK |
-306 |
4.5 |
TGCACGATAATTGGGCA |
|
SMb20436 |
narK |
-276 |
3.9 |
GGCCCAATATTTGACCA |
|
SMc03806 |
glnK |
-214 |
4.9 |
TGCTTATATTTTAATCA |
|
SMc01041 |
nifR3 |
-25 |
4 |
TGTCTAAAAATAGTGCA |
|
SMc00947 |
glnB |
-286 |
4.4 |
TGACTAAGAAATGTGCA |
|
SMc00947 |
glnB |
-254 |
4.1 |
TGCTCAAATAACATGCT |
|
Rhizobium sp. NGR234
|
|
NGR_b17280 |
narK |
-299 |
4.1 |
TGCCCATCAAATGGGCA |
|
NGR_b17280 |
narK |
-269 |
3.9 |
AGGCTAATATTTGGTCA |
|
NGR_b11400 |
nrtC |
-338 |
3.8 |
CGCTGCTTTTTTAAGCA |
|
NGR_b11400 |
nrtC |
-303 |
4.3 |
CGCACAATTATTGACCA |
|
NGR_b15160 |
nrtA |
-297 |
4.4 |
CGCACAAAATTTCATCA |
|
NGR_b15160 |
nrtA |
-269 |
3.8 |
TGCCTATTTCTGAGGCA |
|
NGR_c31500 |
glnK |
-218 |
3.9 |
TGCCTGTTTTTTAATCT |
|
NGR_b03900 |
uctA |
-286 |
4.7 |
TGATCATTTTATAAGCA |
|
NGR_b03900 |
uctA |
-265 |
4.6 |
TGCACAAATTATGGGCG |
|
NGR_c12950 |
nifR3 |
-25 |
4 |
TGTCTAAAAATAGTGCA |
|
NGR_c14750 |
glnB |
-287 |
4.3 |
TGATGACTTATTATGCA |
|
NGR_c14750 |
glnB |
-255 |
4.1 |
TGCTCAAATAACAGGCT |
|
Rhizobium leguminosarum bv. viciae 3841
|
|
pRL100344 |
nrtA |
-227 |
4.2 |
AGCCTAAGAAATAGGCA |
|
RL4565 |
glnK |
-201 |
3.8 |
TGCGCGTTATTTGTGCG |
|
pRL90288 |
uctA |
-299 |
4 |
CGCACATTTTCTGTGCA |
|
pRL90288 |
uctA |
-222 |
3.8 |
TGATTTATAATTTGGCA |
|
RL2255 |
nifR3 |
-25 |
3.8 |
TGGCTAAAAATAATGCA |
|
RL2393 |
glnB |
-269 |
4.2 |
TGCCTATATTTTCATCT |
|
Rhizobium etli CFN 42
|
|
RHE_PF00452 |
nrtA |
-289 |
4.1 |
CGCACAAATGATAATCA |
|
RHE_PF00452 |
nrtA |
-261 |
4.6 |
TGCATATTAAATAATCA |
|
RHE_CH01783 |
narK |
-207 |
3.8 |
CGAACAAATTCTCAGCA |
|
RHE_CH03974 |
glnK |
-200 |
4.4 |
TGCGCATTATTTGTGCG |
|
RHE_PE00123 |
uctA |
-299 |
4.7 |
TGCTCAAAAATTTAGCA |
|
RHE_CH01946 |
nifR3 |
-88 |
3.8 |
TGGCTAAAAATAATGCA |
|
RHE_CH02103 |
glnB |
-287 |
3.8 |
AGACCCAAATTTGTGCA |
|
RHE_CH02103 |
glnB |
-268 |
4.4 |
TGCTTATCTTTTAATCA |
|
Agrobacterium tumefaciens str. C58 (Cereon)
|
|
Atu3905 |
nrtA |
-300 |
4.6 |
TGATTAAAATTTAATCG |
|
Atu1444 |
nifR3 |
-31 |
4 |
TGTCTAAAAATAATGCA |
|
Atu1769 |
glnB |
-297 |
4.1 |
AGACCAAATAATAGTCA |
|
Atu1769 |
glnB |
-278 |
4.5 |
TGCACAAAATATAAACA |
|
Mesorhizobium sp. BNC1
|
|
Meso_1450 |
narK |
-325 |
4.2 |
TGCCTAAGAAATAAACA |
|
Meso_3237 |
glnK |
-203 |
4.7 |
TGCACATTTTTTGTTCA |
|
Mesorhizobium loti MAFF303099
|
|
mll4247 |
glnK |
-202 |
5.2 |
TGCATAATTTTTGAGCA |
|
mll0345 |
glnB |
-222 |
4.5 |
TGCCTAATTCTTATGCG |
|
Brucella melitensis 16M
|
|
BMEI0167 |
amtB |
-195 |
5 |
AGCTTAAATTTTAAGCA |
|
BMEI0864 |
nifR3 |
-48 |
3.8 |
TGATTAAACTGTATGCG |
|
BMEI0864 |
nifR3 |
-21 |
3.9 |
TGCATATCAAATAGGCG |
|
BMEI0978 |
glnB |
-220 |
5.2 |
TGCATAATTTTTAAGCA |
|
Rhodopseudomonas palustris CGA009
|
|
RPA1473 |
dppA |
-132 |
4.9 |
TGCACATTATTTATGCA |
|
RPA3669 |
urtA |
-246 |
4 |
AGTGCAATAATTAATCA |
|
RPA0274 |
glnK |
-240 |
4.4 |
TGCCTGATTATTGATCA |
|
RPA1410 |
uctA |
-243 |
3.7 |
TGCACATTGTTTGTGCC |
|
RPA2591 |
nifR3 |
-92 |
4.6 |
TGCTCAAACATTGAGCG |
|
RPA3669 |
urtA |
-216 |
4.3 |
TGATCAATTGTTGTGCT |
|
RPA2966 |
glnB |
-320 |
4.8 |
TGCTGAATAATTGATCA |
|
Bradyrhizobium japonicum USDA 110
|
|
blr1448 |
urtA |
-111 |
4.4 |
TGCTCAATAAATGAACT |
|
blr1448 |
urtA |
-67 |
4.9 |
TGCACAAATCTTGAGCA |
|
bll4571 |
nirA |
-202 |
4 |
CGTCTAAATTTTGGGCT |
|
blr2806 |
narK |
-292 |
3.9 |
AGCTCAATCCTTGTGCG |
|
blr0612 |
glnK |
-180 |
4.1 |
TGCCCTCATTTTGAGCA |
|
blr1036 |
dppA |
-190 |
4.5 |
CGATGAAATTTTGAGCA |
|
blr4948 |
glnB |
-290 |
3.6 |
TGCCTATTTCGTAGTCT |
|
Bradyrhizobium sp. BTAi1
|
|
BBta_0716 |
dppA |
-161 |
4.8 |
AGCTCAATAAATAAGCA |
|
BBta_7018 |
urtA |
-175 |
4.7 |
TGCTCAAAAAATGGGCT |
|
BBta_7018 |
urtA |
-219 |
3.9 |
TGCACAAATTTGGCGCT |
|
BBta_7018 |
urtA |
-248 |
4.4 |
TGCTTTAAAATTAGTCA |
|
BBta_4137 |
nirA |
-278 |
4.1 |
CGTACAAATTTTAGGCG |
|
BBta_2817 |
nrtA |
-314 |
4.4 |
CGCCCACTTTTTGTGCA |
|
BBta_0293 |
glnK |
-335 |
4.7 |
TGCGCAATTTTTGCGCA |
|
BBta_0739 |
uctA |
-264 |
4 |
TGCCAATTTCTTGGGCA |
|
BBta_4068 |
nifR3 |
-149 |
4.5 |
TGCCCAAGAATTGTGCT |
|
BBta_4580 |
glnB |
-300 |
3.8 |
TGCACAACGTTTGATCT |
|
Nitrobacter winogradskyi Nb-255
|
|
Nwi_1443 |
nifR3 |
-47 |
4.7 |
TGCCTAATAAATAAGCT |
|
Nwi_1903 |
glnB |
-298 |
4.5 |
CGCACAAAAATTGAACA |
|
Azorhizobium caulinodans ORS 571
|
|
AZC_1511 |
dppA |
-159 |
4.8 |
TGCTCAATTTTTAATCT |
|
AZC_0686 |
nrtA |
-242 |
4.6 |
TGCTCATTTTTTGATCT |
|
AZC_4227 |
glnK |
-241 |
4 |
CGCCTATTTTTAAGGCA |
|
AZC_1758 |
urtA |
-179 |
4.6 |
TGCCTAAATTATAGTCA |
|
AZC_4397 |
uctA |
-230 |
3.8 |
TGGCTAAAATTTAGACA |
|
AZC_1602 |
glnB |
-134 |
4.4 |
CGCATACTATTTAGGCA |
|
Xanthobacter autotrophicus Py2
|
|
Xaut_4660 |
dppA |
-159 |
4.9 |
TGCGTAATTATTGTGCA |
|
Xaut_2504 |
nrtA |
-312 |
3.8 |
CGCACAATTTGAATGCA |
|
Xaut_2504 |
nrtA |
-252 |
4.4 |
CGCCCAAATTTTCATCA |
|
Xaut_1084 |
nrtA |
-292 |
3.9 |
TGCCCAATCCATAAGCT |
|
Xaut_1084 |
nrtA |
-270 |
4.6 |
TGCATATTTTTTGTGCG |
|
Xaut_4149 |
urtA |
-331 |
3.8 |
TGCCCTCAAAATAGGCA |
|
Xaut_2209 |
glnK |
-244 |
4.7 |
AGATCAATAATTAGGCA |
|
Xaut_1227 |
uctA |
-300 |
4.8 |
TGCTTAAATTTTGATCG |
|
Xaut_4401 |
nifR3 |
-39 |
3.8 |
TGTCTAAGATGTAGGCA |
|
Xaut_3586 |
glnB |
-138 |
4.2 |
AGCCTATTTCATGAGCA |
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Regulatory Sites
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