Regulog NtrC - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 86 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	8	4
Rhizobium sp. NGR234	21	7
Rhizobium leguminosarum bv. viciae 3841	17	5
Rhizobium etli CFN 42	21	6
Agrobacterium tumefaciens str. C58 (Cereon)	10	3
Mesorhizobium sp. BNC1	6	2
Mesorhizobium loti MAFF303099	4	2
Brucella melitensis 16M	6	3
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009	27	6
Bradyrhizobium japonicum USDA 110	24	6
Bradyrhizobium sp. BTAi1	30	8
Nitrobacter winogradskyi Nb-255	5	2
Azorhizobium caulinodans ORS 571	27	6
Xanthobacter autotrophicus Py2	42	8

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
nrtA	Sinorhizobium meliloti 1021 Gene: SMa0585: Nitrate ABC transporter, substrate-binding component	* Rhizobium sp. NGR234 Site: position = -297 score = 4.43741 sequence = CGCACAAAATTTCATCA Site: position = -269 score = 3.81744 sequence = TGCCTATTTCTGAGGCA Gene: NGR_b15160: Nitrate ABC transporter, substrate-binding component	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -227 score = 4.24955 sequence = AGCCTAAGAAATAGGCA Gene: pRL100344: Nitrate ABC transporter, substrate-binding component	* Rhizobium etli CFN 42 Site: position = -289 score = 4.05001 sequence = CGCACAAATGATAATCA Site: position = -261 score = 4.58483 sequence = TGCATATTAAATAATCA Gene: RHE_PF00452: Nitrate ABC transporter, substrate-binding component	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -300 score = 4.62869 sequence = TGATTAAAATTTAATCG Gene: Atu3905: Nitrate ABC transporter, substrate-binding component	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr2858: Nitrate ABC transporter, substrate-binding component	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: blr2803: Nitrate ABC transporter, substrate-binding component	* Bradyrhizobium sp. BTAi1 Site: position = -314 score = 4.41525 sequence = CGCCCACTTTTTGTGCA Gene: BBta_2817: Nitrate ABC transporter, substrate-binding component	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -242 score = 4.62204 sequence = TGCTCATTTTTTGATCT Gene: AZC_0686: Nitrate ABC transporter, substrate-binding component	2 Xanthobacter autotrophicus Py2* Site: position = -312 score = 3.83542 sequence = CGCACAATTTGAATGCA Site: position = -252 score = 4.40539 sequence = CGCCCAAATTTTCATCA Gene: Xaut_2504: Nitrate ABC transporter, substrate-binding component Site: position = -292 score = 3.91311 sequence = TGCCCAATCCATAAGCT Site: position = -270 score = 4.63214 sequence = TGCATATTTTTTGTGCG Gene: Xaut_1084: Nitrate ABC transporter, substrate-binding component	Nitrate ABC transporter, substrate-binding component
nrtB	Sinorhizobium meliloti 1021 Gene: SMa0583: Nitrate ABC transporter, permease component	Rhizobium sp. NGR234 Gene: NGR_b15170: Nitrate ABC transporter, permease component	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100345: Nitrate ABC transporter, permease component	Rhizobium etli CFN 42 Gene: RHE_PF00453: Nitrate ABC transporter, permease component	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3904: Nitrate ABC transporter, permease component	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr2860: Nitrate ABC transporter, permease component	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: blr2804: Nitrate ABC transporter, permease component	Bradyrhizobium sp. BTAi1 Gene: BBta_2819: Nitrate ABC transporter, permease component	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0685: Nitrate ABC transporter, permease component	2 Xanthobacter autotrophicus Py2 Gene: Xaut_2503: Nitrate ABC transporter, permease component Gene: Xaut_1083: Nitrate ABC transporter, permease component	Nitrate ABC transporter, permease component
nrtC	Sinorhizobium meliloti 1021 Gene: SMa0581: Nitrate ABC transporter, ATP-binding component	2 Rhizobium sp. NGR234* Gene: NGR_b15180: Nitrate ABC transporter, ATP-binding component Site: position = -338 score = 3.84647 sequence = CGCTGCTTTTTTAAGCA Site: position = -303 score = 4.32105 sequence = CGCACAATTATTGACCA Gene: NGR_b11400: Nitrate ABC transporter, ATP-binding component	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100346: Nitrate ABC transporter, ATP-binding component	Rhizobium etli CFN 42 Gene: RHE_PF00454: Nitrate ABC transporter, ATP-binding component	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3903: Nitrate ABC transporter, ATP-binding component	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr2861: Nitrate ABC transporter, ATP-binding component	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: blr2805: Nitrate ABC transporter, ATP-binding component	Bradyrhizobium sp. BTAi1 Gene: BBta_2820: Nitrate ABC transporter, ATP-binding component	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0684: Nitrate ABC transporter, ATP-binding component	2 Xanthobacter autotrophicus Py2 Gene: Xaut_2502: Nitrate ABC transporter, ATP-binding component Gene: Xaut_1082: Nitrate ABC transporter, ATP-binding component	Nitrate ABC transporter, ATP-binding component
Xaut_1081	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1081: Hypothetical protein	Hypothetical protein
nasD	Sinorhizobium meliloti 1021 Gene: SMb20984: Nitrite reductase, large subunit (EC 1.7.1.4)	Rhizobium sp. NGR234 Gene: NGR_b11390: Nitrite reductase, large subunit (EC 1.7.1.4)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1991: Nitrite reductase, large subunit (EC 1.7.1.4)	Rhizobium etli CFN 42 Gene: RHE_CH01782: Nitrite reductase, large subunit (EC 1.7.1.4)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3902: Nitrite reductase, large subunit (EC 1.7.1.4)	Mesorhizobium sp. BNC1 Gene: Meso_1451: Nitrite reductase, large subunit (EC 1.7.1.4)	Mesorhizobium loti MAFF303099 Gene: mlr2862: Nitrite reductase, large subunit (EC 1.7.1.4)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0719: Nitrite reductase, large subunit (EC 1.7.1.4)	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1080: Nitrite reductase, large subunit (EC 1.7.1.4)	Nitrite reductase, large subunit (EC 1.7.1.4)
nasE	Sinorhizobium meliloti 1021 Gene: SMb20985: Nitrite reductase, small subunit (EC 1.7.1.4)	Rhizobium sp. NGR234 Gene: NGR_b11380: Nitrite reductase, small subunit (EC 1.7.1.4)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1990: Nitrite reductase, small subunit (EC 1.7.1.4)	Rhizobium etli CFN 42 Gene: RHE_CH01781: Nitrite reductase, small subunit (EC 1.7.1.4)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3901: Nitrite reductase, small subunit (EC 1.7.1.4)	Mesorhizobium sp. BNC1 Gene: Meso_1452: Nitrite reductase, small subunit (EC 1.7.1.4)	Mesorhizobium loti MAFF303099 Gene: mlr2863: Nitrite reductase, small subunit (EC 1.7.1.4)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0720: Nitrite reductase, small subunit (EC 1.7.1.4)	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1079: Nitrite reductase, small subunit (EC 1.7.1.4)	Nitrite reductase, small subunit (EC 1.7.1.4)
nasA	Sinorhizobium meliloti 1021 Gene: SMb20986: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Rhizobium sp. NGR234 Gene: NGR_b11370: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1989: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Rhizobium etli CFN 42 Gene: RHE_CH01780: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3900: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Mesorhizobium sp. BNC1 Gene: Meso_1453: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Mesorhizobium loti MAFF303099 Gene: mlr2864: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: blr2809: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Bradyrhizobium sp. BTAi1 Gene: BBta_2823: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0679: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	2 Xanthobacter autotrophicus Py2 Gene: Xaut_1078: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) Gene: Xaut_2497: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
cysG	Sinorhizobium meliloti 1021 Gene: SMb20987: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Rhizobium sp. NGR234 Gene: NGR_b11360: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3899: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1077: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
hmp	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3709: Nitric oxide dioxygenase	Bradyrhizobium japonicum USDA 110 Gene: blr2807: Nitric oxide dioxygenase	Bradyrhizobium sp. BTAi1 Gene: BBta_2821: Nitric oxide dioxygenase	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0683: Nitric oxide dioxygenase	Xanthobacter autotrophicus Py2 Gene: Xaut_2501: Nitric oxide dioxygenase	Nitric oxide dioxygenase
nasB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: blr2808: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)	Bradyrhizobium sp. BTAi1 Gene: BBta_2822: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0682: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)	Xanthobacter autotrophicus Py2 Gene: Xaut_2500: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)	Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
nirA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3710: Ferredoxin--nitrite reductase (EC 1.7.7.1)	* Bradyrhizobium japonicum USDA 110 Site: position = -202 score = 3.98659 sequence = CGTCTAAATTTTGGGCT Gene: bll4571: Ferredoxin--nitrite reductase (EC 1.7.7.1)	* Bradyrhizobium sp. BTAi1 Site: position = -278 score = 4.05041 sequence = CGTACAAATTTTAGGCG Gene: BBta_4137: Ferredoxin--nitrite reductase (EC 1.7.7.1)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0681: Ferredoxin--nitrite reductase (EC 1.7.7.1)	Xanthobacter autotrophicus Py2 Gene: Xaut_2499: Ferredoxin--nitrite reductase (EC 1.7.7.1)	Ferredoxin--nitrite reductase (EC 1.7.7.1)
nasB2	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3711: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Bradyrhizobium japonicum USDA 110 Gene: bll4570: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Bradyrhizobium sp. BTAi1 Gene: BBta_4136: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_0680: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Xanthobacter autotrophicus Py2 Gene: Xaut_2498: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
narK	* Sinorhizobium meliloti 1021 Site: position = -306 score = 4.48546 sequence = TGCACGATAATTGGGCA Site: position = -276 score = 3.8585 sequence = GGCCCAATATTTGACCA Gene: SMb20436: Nitrate/nitrite antiporter	* Rhizobium sp. NGR234 Site: position = -299 score = 4.1415 sequence = TGCCCATCAAATGGGCA Site: position = -269 score = 3.87716 sequence = AGGCTAATATTTGGTCA Gene: NGR_b17280: Nitrate/nitrite antiporter	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1992: Nitrate/nitrite antiporter	* Rhizobium etli CFN 42 Site: position = -207 score = 3.77385 sequence = CGAACAAATTCTCAGCA Gene: RHE_CH01783: Nitrate/nitrite antiporter	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -325 score = 4.17811 sequence = TGCCTAAGAAATAAACA Gene: Meso_1450: Nitrate/nitrite antiporter	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	* Bradyrhizobium japonicum USDA 110 Site: position = -292 score = 3.9186 sequence = AGCTCAATCCTTGTGCG Gene: blr2806: Nitrate/nitrite antiporter	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Nitrate/nitrite antiporter

CRON 2.
glnK	* Sinorhizobium meliloti 1021 Site: position = -214 score = 4.86889 sequence = TGCTTATATTTTAATCA Gene: SMc03806: Nitrogen regulatory protein P-II	* Rhizobium sp. NGR234 Site: position = -218 score = 3.86047 sequence = TGCCTGTTTTTTAATCT Gene: NGR_c31500: Nitrogen regulatory protein P-II	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -201 score = 3.80883 sequence = TGCGCGTTATTTGTGCG Gene: RL4565: Nitrogen regulatory protein P-II	* Rhizobium etli CFN 42 Site: position = -200 score = 4.41525 sequence = TGCGCATTATTTGTGCG Gene: RHE_CH03974: Nitrogen regulatory protein P-II	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2757: Nitrogen regulatory protein P-II	* Mesorhizobium sp. BNC1 Site: position = -203 score = 4.67744 sequence = TGCACATTTTTTGTTCA Gene: Meso_3237: Nitrogen regulatory protein P-II	* Mesorhizobium loti MAFF303099 Site: position = -202 score = 5.20856 sequence = TGCATAATTTTTGAGCA Gene: mll4247: Nitrogen regulatory protein P-II	Brucella melitensis 16M	Bartonella quintana str. Toulouse	2 Rhodopseudomonas palustris CGA009* Site: position = -240 score = 4.38404 sequence = TGCCTGATTATTGATCA Gene: RPA0274: Nitrogen regulatory protein P-II Gene: RPA0272: Nitrogen regulatory protein P-II	2 Bradyrhizobium japonicum USDA 110* Gene: blr0606: Nitrogen regulatory protein P-II Site: position = -180 score = 4.14701 sequence = TGCCCTCATTTTGAGCA Gene: blr0612: Nitrogen regulatory protein P-II	2 Bradyrhizobium sp. BTAi1* Site: position = -335 score = 4.6571 sequence = TGCGCAATTTTTGCGCA Gene: BBta_0293: Nitrogen regulatory protein P-II Gene: BBta_0295: Nitrogen regulatory protein P-II	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -241 score = 3.95623 sequence = CGCCTATTTTTAAGGCA Gene: AZC_4227: Nitrogen regulatory protein P-II	* Xanthobacter autotrophicus Py2 Site: position = -244 score = 4.71057 sequence = AGATCAATAATTAGGCA Gene: Xaut_2209: Nitrogen regulatory protein P-II	Nitrogen regulatory protein P-II
amtB	Sinorhizobium meliloti 1021 Gene: SMc03807: Ammonium transporter	Rhizobium sp. NGR234 Gene: NGR_c31490: Ammonium transporter	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4564: Ammonium transporter	Rhizobium etli CFN 42 Gene: RHE_CH03973: Ammonium transporter	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2758: Ammonium transporter	Mesorhizobium sp. BNC1 Gene: Meso_3236: Ammonium transporter	Mesorhizobium loti MAFF303099 Gene: mll4246: Ammonium transporter	* Brucella melitensis 16M Site: position = -195 score = 5.01333 sequence = AGCTTAAATTTTAAGCA Gene: BMEI0167: Ammonium transporter	Bartonella quintana str. Toulouse	2 Rhodopseudomonas palustris CGA009 Gene: RPA0273: Ammonium transporter Gene: RPA0275: Ammonium transporter	3 Bradyrhizobium japonicum USDA 110 Gene: blr0608: Ammonium transporter Gene: blr0607: Ammonium transporter Gene: blr0613: Ammonium transporter	2 Bradyrhizobium sp. BTAi1 Gene: BBta_0292: Ammonium transporter Gene: BBta_0294: Ammonium transporter	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4226: Ammonium transporter	Xanthobacter autotrophicus Py2 Gene: Xaut_2208: Ammonium transporter	Ammonium transporter

CRON 3.
urtA	Sinorhizobium meliloti 1021 Gene: SMb20605: Urea ABC transporter, substrate-binding component	Rhizobium sp. NGR234 Gene: NGR_b21780: Urea ABC transporter, substrate-binding component	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3741: Urea ABC transporter, substrate-binding component	Rhizobium etli CFN 42 Gene: RHE_CH03317: Urea ABC transporter, substrate-binding component	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2414: Urea ABC transporter, substrate-binding component	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll0762: Urea ABC transporter, substrate-binding component	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -246 score = 4.02468 sequence = AGTGCAATAATTAATCA Site: position = -216 score = 4.26189 sequence = TGATCAATTGTTGTGCT Gene: RPA3669: Urea ABC transporter, substrate-binding component	* Bradyrhizobium japonicum USDA 110 Site: position = -111 score = 4.35681 sequence = TGCTCAATAAATGAACT Site: position = -67 score = 4.91057 sequence = TGCACAAATCTTGAGCA Gene: blr1448: Urea ABC transporter, substrate-binding component	* Bradyrhizobium sp. BTAi1 Site: position = -175 score = 4.68599 sequence = TGCTCAAAAAATGGGCT Site: position = -219 score = 3.86542 sequence = TGCACAAATTTGGCGCT Site: position = -248 score = 4.35645 sequence = TGCTTTAAAATTAGTCA Gene: BBta_7018: Urea ABC transporter, substrate-binding component	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -179 score = 4.58036 sequence = TGCCTAAATTATAGTCA Gene: AZC_1758: Urea ABC transporter, substrate-binding component	* Xanthobacter autotrophicus Py2 Site: position = -331 score = 3.80334 sequence = TGCCCTCAAAATAGGCA Gene: Xaut_4149: Urea ABC transporter, substrate-binding component	Urea ABC transporter, substrate-binding component
urtB	Sinorhizobium meliloti 1021 Gene: SMb20604: Urea ABC transporter, permease component 1	Rhizobium sp. NGR234 Gene: NGR_b21770: Urea ABC transporter, permease component 1	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3740: Urea ABC transporter, permease component 1	Rhizobium etli CFN 42 Gene: RHE_CH03316: Urea ABC transporter, permease component 1	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2413: Urea ABC transporter, permease component 1	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll0760: Urea ABC transporter, permease component 1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3668: Urea ABC transporter, permease component 1	Bradyrhizobium japonicum USDA 110 Gene: blr1449: Urea ABC transporter, permease component 1	Bradyrhizobium sp. BTAi1 Gene: BBta_7017: Urea ABC transporter, permease component 1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1759: Urea ABC transporter, permease component 1	Xanthobacter autotrophicus Py2 Gene: Xaut_4150: Urea ABC transporter, permease component 1	Urea ABC transporter, permease component 1
urtC	Sinorhizobium meliloti 1021 Gene: SMb20603: Urea ABC transporter, permease component 2	Rhizobium sp. NGR234 Gene: NGR_b21760: Urea ABC transporter, permease component 2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3739: Urea ABC transporter, permease component 2	Rhizobium etli CFN 42 Gene: RHE_CH03315: Urea ABC transporter, permease component 2	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2412: Urea ABC transporter, permease component 2	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll0759: Urea ABC transporter, permease component 2	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3667: Urea ABC transporter, permease component 2	Bradyrhizobium japonicum USDA 110 Gene: blr1450: Urea ABC transporter, permease component 2	Bradyrhizobium sp. BTAi1 Gene: BBta_7016: Urea ABC transporter, permease component 2	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1760: Urea ABC transporter, permease component 2	Xanthobacter autotrophicus Py2 Gene: Xaut_4151: Urea ABC transporter, permease component 2	Urea ABC transporter, permease component 2
urtD	Sinorhizobium meliloti 1021 Gene: SMb20602: Urea ABC transporter, ATP-binding component 1	Rhizobium sp. NGR234 Gene: NGR_b21750: Urea ABC transporter, ATP-binding component 1	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3738: Urea ABC transporter, ATP-binding component 1	Rhizobium etli CFN 42 Gene: RHE_CH03314: Urea ABC transporter, ATP-binding component 1	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2411: Urea ABC transporter, ATP-binding component 1	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll0758: Urea ABC transporter, ATP-binding component 1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3666: Urea ABC transporter, ATP-binding component 1	Bradyrhizobium japonicum USDA 110 Gene: blr1451: Urea ABC transporter, ATP-binding component 1	Bradyrhizobium sp. BTAi1 Gene: BBta_7015: Urea ABC transporter, ATP-binding component 1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1761: Urea ABC transporter, ATP-binding component 1	Xanthobacter autotrophicus Py2 Gene: Xaut_4152: Urea ABC transporter, ATP-binding component 1	Urea ABC transporter, ATP-binding component 1
urtE	Sinorhizobium meliloti 1021 Gene: SMb21707: Urea ABC transporter, ATP-binding component 2	Rhizobium sp. NGR234 Gene: NGR_b21740: Urea ABC transporter, ATP-binding component 2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3737: Urea ABC transporter, ATP-binding component 2	Rhizobium etli CFN 42 Gene: RHE_CH03312: Urea ABC transporter, ATP-binding component 2	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2410: Urea ABC transporter, ATP-binding component 2	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll0756: Urea ABC transporter, ATP-binding component 2	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3665: Urea ABC transporter, ATP-binding component 2	Bradyrhizobium japonicum USDA 110 Gene: blr1452: Urea ABC transporter, ATP-binding component 2	Bradyrhizobium sp. BTAi1 Gene: BBta_7014: Urea ABC transporter, ATP-binding component 2	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1762: Urea ABC transporter, ATP-binding component 2	Xanthobacter autotrophicus Py2 Gene: Xaut_4153: Urea ABC transporter, ATP-binding component 2	Urea ABC transporter, ATP-binding component 2
ureD	Sinorhizobium meliloti 1021 Gene: SMc01942: Urease accessory protein, UreD	Rhizobium sp. NGR234 Gene: NGR_c25060: Urease accessory protein, UreD	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3736: Urease accessory protein, UreD	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2408: Urease accessory protein, UreD	Mesorhizobium sp. BNC1 Gene: Meso_2680: Urease accessory protein, UreD	Mesorhizobium loti MAFF303099 Gene: mll4949: Urease accessory protein, UreD	Brucella melitensis 16M Gene: BMEI1655: Urease accessory protein, UreD	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3664: Urease accessory protein, UreD	Bradyrhizobium japonicum USDA 110 Gene: blr1453: Urease accessory protein, UreD	Bradyrhizobium sp. BTAi1 Gene: BBta_7013: Urease accessory protein, UreD	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1763: Urease accessory protein, UreD	Xanthobacter autotrophicus Py2 Gene: Xaut_4154: Urease accessory protein, UreD	Urease accessory protein, UreD
ureA	Sinorhizobium meliloti 1021 Gene: SMc01941: Urease, gamma subunit (EC 3.5.1.5)	Rhizobium sp. NGR234 Gene: NGR_c25050: Urease, gamma subunit (EC 3.5.1.5)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3735: Urease, gamma subunit (EC 3.5.1.5)	Rhizobium etli CFN 42 Gene: RHE_CH03310: Urease, gamma subunit (EC 3.5.1.5)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2407: Urease, gamma subunit (EC 3.5.1.5)	Mesorhizobium sp. BNC1 Gene: Meso_2681: Urease, gamma subunit (EC 3.5.1.5)	Mesorhizobium loti MAFF303099 Gene: mll4948: Urease, gamma subunit (EC 3.5.1.5)	Brucella melitensis 16M Gene: BMEI1654: Urease, gamma subunit (EC 3.5.1.5)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3663: Urease, gamma subunit (EC 3.5.1.5)	Bradyrhizobium japonicum USDA 110 Gene: blr1454: Urease, gamma subunit (EC 3.5.1.5)	Bradyrhizobium sp. BTAi1 Gene: BBta_7012: Urease, gamma subunit (EC 3.5.1.5)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1764: Urease, gamma subunit (EC 3.5.1.5)	Xanthobacter autotrophicus Py2 Gene: Xaut_4155: Urease, gamma subunit (EC 3.5.1.5)	Urease, gamma subunit (EC 3.5.1.5)
ureB	Sinorhizobium meliloti 1021 Gene: SMc01939: Urease, beta subunit (EC 3.5.1.5)	Rhizobium sp. NGR234 Gene: NGR_c25030: Urease, beta subunit (EC 3.5.1.5)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3734: Urease, beta subunit (EC 3.5.1.5)	Rhizobium etli CFN 42 Gene: RHE_CH03308: Urease, beta subunit (EC 3.5.1.5)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2405: Urease, beta subunit (EC 3.5.1.5)	Mesorhizobium sp. BNC1 Gene: Meso_2683: Urease, beta subunit (EC 3.5.1.5)	Mesorhizobium loti MAFF303099 Gene: msl4944: Urease, beta subunit (EC 3.5.1.5)	Brucella melitensis 16M Gene: BMEI1653: Urease, beta subunit (EC 3.5.1.5)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3662: Urease, beta subunit (EC 3.5.1.5)	Bradyrhizobium japonicum USDA 110 Gene: blr1455: Urease, beta subunit (EC 3.5.1.5)	Bradyrhizobium sp. BTAi1 Gene: BBta_7011: Urease, beta subunit (EC 3.5.1.5)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Urease, beta subunit (EC 3.5.1.5)
RPA3661	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3661: Metal dependent phosphohydrolase	Bradyrhizobium japonicum USDA 110 Gene: blr1456: Metal dependent phosphohydrolase	Bradyrhizobium sp. BTAi1 Gene: BBta_7010: Metal dependent phosphohydrolase	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Metal dependent phosphohydrolase
ureC	Sinorhizobium meliloti 1021 Gene: SMc01837: Urease, alpha subunit (EC 3.5.1.5)	Rhizobium sp. NGR234 Gene: NGR_c25000: Urease, alpha subunit (EC 3.5.1.5)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3731: Urease, alpha subunit (EC 3.5.1.5)	Rhizobium etli CFN 42 Gene: RHE_CH03305: Urease, alpha subunit (EC 3.5.1.5)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2401: Urease, alpha subunit (EC 3.5.1.5)	Mesorhizobium sp. BNC1 Gene: Meso_2684: Urease, alpha subunit (EC 3.5.1.5)	Mesorhizobium loti MAFF303099 Gene: mll4940: Urease, alpha subunit (EC 3.5.1.5)	Brucella melitensis 16M Gene: BMEI1652: Urease, alpha subunit (EC 3.5.1.5)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3660: Urease, alpha subunit (EC 3.5.1.5)	Bradyrhizobium japonicum USDA 110 Gene: blr1457: Urease, alpha subunit (EC 3.5.1.5)	Bradyrhizobium sp. BTAi1 Gene: BBta_7009: Urease, alpha subunit (EC 3.5.1.5)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1766: Urease, alpha subunit (EC 3.5.1.5)	Xanthobacter autotrophicus Py2 Gene: Xaut_4156: Urease, alpha subunit (EC 3.5.1.5)	Urease, alpha subunit (EC 3.5.1.5)

CRON 4.
uctA	Sinorhizobium meliloti 1021	* Rhizobium sp. NGR234 Site: position = -286 score = 4.68037 sequence = TGATCATTTTATAAGCA Site: position = -265 score = 4.58342 sequence = TGCACAAATTATGGGCG Gene: NGR_b03900: Urea carboxylase-related ABC transporter, substrate-binding component	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -299 score = 3.97402 sequence = CGCACATTTTCTGTGCA Site: position = -222 score = 3.79759 sequence = TGATTTATAATTTGGCA Gene: pRL90288: Urea carboxylase-related ABC transporter, substrate-binding component	* Rhizobium etli CFN 42 Site: position = -299 score = 4.7398 sequence = TGCTCAAAAATTTAGCA Gene: RHE_PE00123: Urea carboxylase-related ABC transporter, substrate-binding component	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -243 score = 3.74305 sequence = TGCACATTGTTTGTGCC Gene: RPA1410: Urea carboxylase-related ABC transporter, substrate-binding component	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -264 score = 3.95388 sequence = TGCCAATTTCTTGGGCA Gene: BBta_0739: Urea carboxylase-related ABC transporter, substrate-binding component	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -230 score = 3.84209 sequence = TGGCTAAAATTTAGACA Gene: AZC_4397: Urea carboxylase-related ABC transporter, substrate-binding component	* Xanthobacter autotrophicus Py2 Site: position = -300 score = 4.84236 sequence = TGCTTAAATTTTGATCG Gene: Xaut_1227: Urea carboxylase-related ABC transporter, substrate-binding component	Urea carboxylase-related ABC transporter, substrate-binding component
uctB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03890: Urea carboxylase-related ABC transporter, permease component	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90289: Urea carboxylase-related ABC transporter, permease component	Rhizobium etli CFN 42 Gene: RHE_PE00122: Urea carboxylase-related ABC transporter, permease component	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1409: Urea carboxylase-related ABC transporter, permease component	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0741: Urea carboxylase-related ABC transporter, permease component	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4398: Urea carboxylase-related ABC transporter, permease component	Xanthobacter autotrophicus Py2 Gene: Xaut_1226: Urea carboxylase-related ABC transporter, permease component	Urea carboxylase-related ABC transporter, permease component
uctC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03880: Urea carboxylase-related ABC transporter, ATP-binding component	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90290: Urea carboxylase-related ABC transporter, ATP-binding component	Rhizobium etli CFN 42 Gene: RHE_PE00121: Urea carboxylase-related ABC transporter, ATP-binding component	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1408: Urea carboxylase-related ABC transporter, ATP-binding component	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0742: Urea carboxylase-related ABC transporter, ATP-binding component	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4399: Urea carboxylase-related ABC transporter, ATP-binding component	Xanthobacter autotrophicus Py2 Gene: Xaut_1225: Urea carboxylase-related ABC transporter, ATP-binding component	Urea carboxylase-related ABC transporter, ATP-binding component
uahC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Rhizobium etli CFN 42 Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Xanthobacter autotrophicus Py2 Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
uahB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Rhizobium etli CFN 42 Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Xanthobacter autotrophicus Py2 Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
uahA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90293: Urea carboxylase (EC 6.3.4.6)	Rhizobium etli CFN 42 Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1405: Urea carboxylase (EC 6.3.4.6)	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6)	Xanthobacter autotrophicus Py2 Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6)	Urea carboxylase (EC 6.3.4.6)
atzF	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54)	Rhizobium etli CFN 42 Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Allophanate hydrolase (EC 3.5.1.54)
atzF2	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54)	Xanthobacter autotrophicus Py2 Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54)	Allophanate hydrolase (EC 3.5.1.54)
speB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03870: Agmatinase (EC 3.5.3.11)	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0743: Agmatinase (EC 3.5.3.11)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Agmatinase (EC 3.5.3.11)
NGR_b03860	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_b03860: Hypothetical protein	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_0744: Hypothetical protein	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Hypothetical protein

CRON 5.
glnB	* Sinorhizobium meliloti 1021 Site: position = -286 score = 4.35868 sequence = TGACTAAGAAATGTGCA Site: position = -254 score = 4.10616 sequence = TGCTCAAATAACATGCT Gene: SMc00947: Nitrogen regulatory protein P-II	* Rhizobium sp. NGR234 Site: position = -287 score = 4.31792 sequence = TGATGACTTATTATGCA Site: position = -255 score = 4.07414 sequence = TGCTCAAATAACAGGCT Gene: NGR_c14750: Nitrogen regulatory protein P-II	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -269 score = 4.15204 sequence = TGCCTATATTTTCATCT Gene: RL2393: Nitrogen regulatory protein P-II	* Rhizobium etli CFN 42 Site: position = -287 score = 3.84751 sequence = AGACCCAAATTTGTGCA Site: position = -268 score = 4.40488 sequence = TGCTTATCTTTTAATCA Gene: RHE_CH02103: Nitrogen regulatory protein P-II	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -297 score = 4.11985 sequence = AGACCAAATAATAGTCA Site: position = -278 score = 4.47473 sequence = TGCACAAAATATAAACA Gene: Atu1769: Nitrogen regulatory protein P-II	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -222 score = 4.52948 sequence = TGCCTAATTCTTATGCG Gene: mll0345: Nitrogen regulatory protein P-II	* Brucella melitensis 16M Site: position = -220 score = 5.20311 sequence = TGCATAATTTTTAAGCA Gene: BMEI0978: Nitrogen regulatory protein P-II	Bartonella quintana str. Toulouse Gene: BQ07880: Nitrogen regulatory protein P-II	* Rhodopseudomonas palustris CGA009 Site: position = -320 score = 4.84201 sequence = TGCTGAATAATTGATCA Gene: RPA2966: Nitrogen regulatory protein P-II	* Bradyrhizobium japonicum USDA 110 Site: position = -290 score = 3.63492 sequence = TGCCTATTTCGTAGTCT Gene: blr4948: Nitrogen regulatory protein P-II	* Bradyrhizobium sp. BTAi1 Site: position = -300 score = 3.75361 sequence = TGCACAACGTTTGATCT Gene: BBta_4580: Nitrogen regulatory protein P-II	* Nitrobacter winogradskyi Nb-255 Site: position = -298 score = 4.47034 sequence = CGCACAAAAATTGAACA Gene: Nwi_1903: Nitrogen regulatory protein P-II	* Azorhizobium caulinodans ORS 571 Site: position = -134 score = 4.40436 sequence = CGCATACTATTTAGGCA Gene: AZC_1602: Nitrogen regulatory protein P-II	* Xanthobacter autotrophicus Py2 Site: position = -138 score = 4.18316 sequence = AGCCTATTTCATGAGCA Gene: Xaut_3586: Nitrogen regulatory protein P-II	Nitrogen regulatory protein P-II
glnA	Sinorhizobium meliloti 1021 Gene: SMc00948: Glutamine synthetase type I (EC 6.3.1.2)	Rhizobium sp. NGR234 Gene: NGR_c14740: Glutamine synthetase type I (EC 6.3.1.2)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2392: Glutamine synthetase type I (EC 6.3.1.2)	Rhizobium etli CFN 42 Gene: RHE_CH02102: Glutamine synthetase type I (EC 6.3.1.2)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1770: Glutamine synthetase type I (EC 6.3.1.2)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll0343: Glutamine synthetase type I (EC 6.3.1.2)	Brucella melitensis 16M Gene: BMEI0979: Glutamine synthetase type I (EC 6.3.1.2)	Bartonella quintana str. Toulouse Gene: BQ07890: Glutamine synthetase type I (EC 6.3.1.2)	Rhodopseudomonas palustris CGA009 Gene: RPA2967: Glutamine synthetase type I (EC 6.3.1.2)	2 Bradyrhizobium japonicum USDA 110 Gene: blr4949: Glutamine synthetase type I (EC 6.3.1.2) Gene: blr4835: Glutamine synthetase type I (EC 6.3.1.2)	Bradyrhizobium sp. BTAi1 Gene: BBta_4581: Glutamine synthetase type I (EC 6.3.1.2)	Nitrobacter winogradskyi Nb-255 Gene: Nwi_1904: Glutamine synthetase type I (EC 6.3.1.2)	Azorhizobium caulinodans ORS 571 Gene: AZC_1601: Glutamine synthetase type I (EC 6.3.1.2)	Xanthobacter autotrophicus Py2 Gene: Xaut_3585: Glutamine synthetase type I (EC 6.3.1.2)	Glutamine synthetase type I (EC 6.3.1.2)

CRON 6.
dppA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -132 score = 4.88022 sequence = TGCACATTATTTATGCA Gene: RPA1473: Dipeptide ABC transporter, substrate-binding component	* Bradyrhizobium japonicum USDA 110 Site: position = -190 score = 4.54965 sequence = CGATGAAATTTTGAGCA Gene: blr1036: Dipeptide ABC transporter, substrate-binding component	* Bradyrhizobium sp. BTAi1 Site: position = -161 score = 4.84695 sequence = AGCTCAATAAATAAGCA Gene: BBta_0716: Dipeptide ABC transporter, substrate-binding component	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -159 score = 4.8327 sequence = TGCTCAATTTTTAATCT Gene: AZC_1511: Dipeptide ABC transporter, substrate-binding component	* Xanthobacter autotrophicus Py2 Site: position = -159 score = 4.89613 sequence = TGCGTAATTATTGTGCA Gene: Xaut_4660: Dipeptide ABC transporter, substrate-binding component	Dipeptide ABC transporter, substrate-binding component
dppB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1472: Dipeptide ABC transporter, permease component 1	Bradyrhizobium japonicum USDA 110 Gene: blr1037: Dipeptide ABC transporter, permease component 1	Bradyrhizobium sp. BTAi1 Gene: BBta_0717: Dipeptide ABC transporter, permease component 1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1512: Dipeptide ABC transporter, permease component 1	Xanthobacter autotrophicus Py2 Gene: Xaut_4659: Dipeptide ABC transporter, permease component 1	Dipeptide ABC transporter, permease component 1
dppC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1471: Dipeptide ABC transporter, permease component 2	Bradyrhizobium japonicum USDA 110 Gene: blr1038: Dipeptide ABC transporter, permease component 2	Bradyrhizobium sp. BTAi1 Gene: BBta_0718: Dipeptide ABC transporter, permease component 2	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1513: Dipeptide ABC transporter, permease component 2	Xanthobacter autotrophicus Py2 Gene: Xaut_4658: Dipeptide ABC transporter, permease component 2	Dipeptide ABC transporter, permease component 2
dppDE	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1470: Dipeptide ABC transporter, ATP-binding component	Bradyrhizobium japonicum USDA 110 Gene: blr1039: Dipeptide ABC transporter, ATP-binding component	Bradyrhizobium sp. BTAi1 Gene: BBta_0719: Dipeptide ABC transporter, ATP-binding component	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_1514: Dipeptide ABC transporter, ATP-binding component	Xanthobacter autotrophicus Py2 Gene: Xaut_4657: Dipeptide ABC transporter, ATP-binding component	Dipeptide ABC transporter, ATP-binding component

CRON 7.
nifR3	* Sinorhizobium meliloti 1021 Site: position = -25 score = 3.96229 sequence = TGTCTAAAAATAGTGCA Gene: SMc01041: Predicted oxidoreductase, FAD binding	* Rhizobium sp. NGR234 Site: position = -25 score = 3.96229 sequence = TGTCTAAAAATAGTGCA Gene: NGR_c12950: Predicted oxidoreductase, FAD binding	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -25 score = 3.78543 sequence = TGGCTAAAAATAATGCA Gene: RL2255: Predicted oxidoreductase, FAD binding	* Rhizobium etli CFN 42 Site: position = -88 score = 3.78543 sequence = TGGCTAAAAATAATGCA Gene: RHE_CH01946: Predicted oxidoreductase, FAD binding	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -31 score = 3.95685 sequence = TGTCTAAAAATAATGCA Gene: Atu1444: Predicted oxidoreductase, FAD binding	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr0396: Predicted oxidoreductase, FAD binding	* Brucella melitensis 16M Site: position = -48 score = 3.83212 sequence = TGATTAAACTGTATGCG Site: position = -21 score = 3.91456 sequence = TGCATATCAAATAGGCG Gene: BMEI0864: Predicted oxidoreductase, FAD binding	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -92 score = 4.59201 sequence = TGCTCAAACATTGAGCG Gene: RPA2591: Predicted oxidoreductase, FAD binding	Bradyrhizobium japonicum USDA 110 Gene: blr4486: Predicted oxidoreductase, FAD binding	* Bradyrhizobium sp. BTAi1 Site: position = -149 score = 4.50857 sequence = TGCCCAAGAATTGTGCT Gene: BBta_4068: Predicted oxidoreductase, FAD binding	* Nitrobacter winogradskyi Nb-255 Site: position = -47 score = 4.69725 sequence = TGCCTAATAAATAAGCT Gene: Nwi_1443: Predicted oxidoreductase, FAD binding	Azorhizobium caulinodans ORS 571 Gene: AZC_3088: Predicted oxidoreductase, FAD binding	* Xanthobacter autotrophicus Py2 Site: position = -39 score = 3.8214 sequence = TGTCTAAGATGTAGGCA Gene: Xaut_4401: Predicted oxidoreductase, FAD binding	Predicted oxidoreductase, FAD binding
ntrB	Sinorhizobium meliloti 1021 Gene: SMc01042: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Rhizobium sp. NGR234 Gene: NGR_c12960: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2256: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Rhizobium etli CFN 42 Gene: RHE_CH01947: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1445: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr0397: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Brucella melitensis 16M Gene: BMEI0865: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA2592: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Bradyrhizobium japonicum USDA 110 Gene: blr4487: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Bradyrhizobium sp. BTAi1 Gene: BBta_4069: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Nitrobacter winogradskyi Nb-255 Gene: Nwi_1444: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Azorhizobium caulinodans ORS 571 Gene: AZC_3087: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Xanthobacter autotrophicus Py2 Gene: Xaut_4400: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC	Sinorhizobium meliloti 1021 Gene: SMc01043: Nitrogen regulation protein NR(I), Fis family	Rhizobium sp. NGR234 Gene: NGR_c12970: Nitrogen regulation protein NR(I), Fis family	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2257: Nitrogen regulation protein NR(I), Fis family	Rhizobium etli CFN 42 Gene: RHE_CH01948: Nitrogen regulation protein NR(I), Fis family	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1446: Nitrogen regulation protein NR(I), Fis family	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr0398: Nitrogen regulation protein NR(I), Fis family	Brucella melitensis 16M Gene: BMEI0866: Nitrogen regulation protein NR(I), Fis family	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA2593: Nitrogen regulation protein NR(I), Fis family	Bradyrhizobium japonicum USDA 110 Gene: blr4488: Nitrogen regulation protein NR(I), Fis family	Bradyrhizobium sp. BTAi1 Gene: BBta_4070: Nitrogen regulation protein NR(I), Fis family	Nitrobacter winogradskyi Nb-255 Gene: Nwi_1445: Nitrogen regulation protein NR(I), Fis family	Azorhizobium caulinodans ORS 571 Gene: AZC_3086: Nitrogen regulation protein NR(I), Fis family	Xanthobacter autotrophicus Py2 Gene: Xaut_4399: Nitrogen regulation protein NR(I), Fis family	Nitrogen regulation protein NR(I), Fis family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NtrC - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --