Regulog NtrC - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 8 | 4 |
| Rhizobium sp. NGR234 | 21 | 7 |
| Rhizobium leguminosarum bv. viciae 3841 | 17 | 5 |
| Rhizobium etli CFN 42 | 21 | 6 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 10 | 3 |
| Mesorhizobium sp. BNC1 | 6 | 2 |
| Mesorhizobium loti MAFF303099 | 4 | 2 |
| Brucella melitensis 16M | 6 | 3 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 27 | 6 |
| Bradyrhizobium japonicum USDA 110 | 24 | 6 |
| Bradyrhizobium sp. BTAi1 | 30 | 8 |
| Nitrobacter winogradskyi Nb-255 | 5 | 2 |
| Azorhizobium caulinodans ORS 571 | 27 | 6 |
| Xanthobacter autotrophicus Py2 | 42 | 8 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| nrtA |
Gene: SMa0585: Nitrate ABC transporter, substrate-binding component |
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Rhizobium sp. NGR234 Site: position = -297 score = 4.43741 sequence = CGCACAAAATTTCATCA Site: position = -269 score = 3.81744 sequence = TGCCTATTTCTGAGGCA Gene: NGR_b15160: Nitrate ABC transporter, substrate-binding component |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -227 score = 4.24955 sequence = AGCCTAAGAAATAGGCA Gene: pRL100344: Nitrate ABC transporter, substrate-binding component |
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Rhizobium etli CFN 42 Site: position = -289 score = 4.05001 sequence = CGCACAAATGATAATCA Site: position = -261 score = 4.58483 sequence = TGCATATTAAATAATCA Gene: RHE_PF00452: Nitrate ABC transporter, substrate-binding component |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -300 score = 4.62869 sequence = TGATTAAAATTTAATCG Gene: Atu3905: Nitrate ABC transporter, substrate-binding component |
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Gene: mlr2858: Nitrate ABC transporter, substrate-binding component |
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Gene: blr2803: Nitrate ABC transporter, substrate-binding component |
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Bradyrhizobium sp. BTAi1 Site: position = -314 score = 4.41525 sequence = CGCCCACTTTTTGTGCA Gene: BBta_2817: Nitrate ABC transporter, substrate-binding component |
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Azorhizobium caulinodans ORS 571 Site: position = -242 score = 4.62204 sequence = TGCTCATTTTTTGATCT Gene: AZC_0686: Nitrate ABC transporter, substrate-binding component |
*2
Xanthobacter autotrophicus Py2 Site: position = -312 score = 3.83542 sequence = CGCACAATTTGAATGCA Site: position = -252 score = 4.40539 sequence = CGCCCAAATTTTCATCA Gene: Xaut_2504: Nitrate ABC transporter, substrate-binding component Site: position = -292 score = 3.91311 sequence = TGCCCAATCCATAAGCT Site: position = -270 score = 4.63214 sequence = TGCATATTTTTTGTGCG Gene: Xaut_1084: Nitrate ABC transporter, substrate-binding component |
Nitrate ABC transporter, substrate-binding component |
| nrtB |
Gene: SMa0583: Nitrate ABC transporter, permease component |
Gene: NGR_b15170: Nitrate ABC transporter, permease component |
Gene: pRL100345: Nitrate ABC transporter, permease component |
Gene: RHE_PF00453: Nitrate ABC transporter, permease component |
Gene: Atu3904: Nitrate ABC transporter, permease component |
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Gene: mlr2860: Nitrate ABC transporter, permease component |
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Gene: blr2804: Nitrate ABC transporter, permease component |
Gene: BBta_2819: Nitrate ABC transporter, permease component |
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Gene: AZC_0685: Nitrate ABC transporter, permease component |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_2503: Nitrate ABC transporter, permease component Gene: Xaut_1083: Nitrate ABC transporter, permease component |
Nitrate ABC transporter, permease component |
| nrtC |
Gene: SMa0581: Nitrate ABC transporter, ATP-binding component |
*2
Rhizobium sp. NGR234 Gene: NGR_b15180: Nitrate ABC transporter, ATP-binding component Site: position = -338 score = 3.84647 sequence = CGCTGCTTTTTTAAGCA Site: position = -303 score = 4.32105 sequence = CGCACAATTATTGACCA Gene: NGR_b11400: Nitrate ABC transporter, ATP-binding component |
Gene: pRL100346: Nitrate ABC transporter, ATP-binding component |
Gene: RHE_PF00454: Nitrate ABC transporter, ATP-binding component |
Gene: Atu3903: Nitrate ABC transporter, ATP-binding component |
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Gene: mlr2861: Nitrate ABC transporter, ATP-binding component |
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Gene: blr2805: Nitrate ABC transporter, ATP-binding component |
Gene: BBta_2820: Nitrate ABC transporter, ATP-binding component |
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Gene: AZC_0684: Nitrate ABC transporter, ATP-binding component |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_2502: Nitrate ABC transporter, ATP-binding component Gene: Xaut_1082: Nitrate ABC transporter, ATP-binding component |
Nitrate ABC transporter, ATP-binding component |
| Xaut_1081 |
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Gene: Xaut_1081: Hypothetical protein |
Hypothetical protein |
| nasD |
Gene: SMb20984: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: NGR_b11390: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: RL1991: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: RHE_CH01782: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Atu3902: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Meso_1451: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: mlr2862: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Gene: Nwi_0719: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Gene: Xaut_1080: Nitrite reductase, large subunit (EC 1.7.1.4) |
Nitrite reductase, large subunit (EC 1.7.1.4) |
| nasE |
Gene: SMb20985: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: NGR_b11380: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: RL1990: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: RHE_CH01781: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Atu3901: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Meso_1452: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: mlr2863: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: Nwi_0720: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: Xaut_1079: Nitrite reductase, small subunit (EC 1.7.1.4) |
Nitrite reductase, small subunit (EC 1.7.1.4) |
| nasA |
Gene: SMb20986: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: NGR_b11370: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: RL1989: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: RHE_CH01780: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Atu3900: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Meso_1453: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: mlr2864: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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Gene: blr2809: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: BBta_2823: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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Gene: AZC_0679: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_1078: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) Gene: Xaut_2497: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
| cysG |
Gene: SMb20987: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: NGR_b11360: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: Atu3899: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: Xaut_1077: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| hmp |
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Gene: RPA3709: Nitric oxide dioxygenase |
Gene: blr2807: Nitric oxide dioxygenase |
Gene: BBta_2821: Nitric oxide dioxygenase |
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Gene: AZC_0683: Nitric oxide dioxygenase |
Gene: Xaut_2501: Nitric oxide dioxygenase |
Nitric oxide dioxygenase |
| nasB |
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Gene: blr2808: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: BBta_2822: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
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Gene: AZC_0682: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: Xaut_2500: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
| nirA |
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Gene: RPA3710: Ferredoxin--nitrite reductase (EC 1.7.7.1) |
*
Bradyrhizobium japonicum USDA 110 Site: position = -202 score = 3.98659 sequence = CGTCTAAATTTTGGGCT Gene: bll4571: Ferredoxin--nitrite reductase (EC 1.7.7.1) |
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Bradyrhizobium sp. BTAi1 Site: position = -278 score = 4.05041 sequence = CGTACAAATTTTAGGCG Gene: BBta_4137: Ferredoxin--nitrite reductase (EC 1.7.7.1) |
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Gene: AZC_0681: Ferredoxin--nitrite reductase (EC 1.7.7.1) |
Gene: Xaut_2499: Ferredoxin--nitrite reductase (EC 1.7.7.1) |
Ferredoxin--nitrite reductase (EC 1.7.7.1) |
| nasB2 |
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Gene: RPA3711: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: bll4570: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: BBta_4136: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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Gene: AZC_0680: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Xaut_2498: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
| narK |
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Sinorhizobium meliloti 1021 Site: position = -306 score = 4.48546 sequence = TGCACGATAATTGGGCA Site: position = -276 score = 3.8585 sequence = GGCCCAATATTTGACCA Gene: SMb20436: Nitrate/nitrite antiporter |
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Rhizobium sp. NGR234 Site: position = -299 score = 4.1415 sequence = TGCCCATCAAATGGGCA Site: position = -269 score = 3.87716 sequence = AGGCTAATATTTGGTCA Gene: NGR_b17280: Nitrate/nitrite antiporter |
Gene: RL1992: Nitrate/nitrite antiporter |
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Rhizobium etli CFN 42 Site: position = -207 score = 3.77385 sequence = CGAACAAATTCTCAGCA Gene: RHE_CH01783: Nitrate/nitrite antiporter |
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Mesorhizobium sp. BNC1 Site: position = -325 score = 4.17811 sequence = TGCCTAAGAAATAAACA Gene: Meso_1450: Nitrate/nitrite antiporter |
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Bradyrhizobium japonicum USDA 110 Site: position = -292 score = 3.9186 sequence = AGCTCAATCCTTGTGCG Gene: blr2806: Nitrate/nitrite antiporter |
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Nitrate/nitrite antiporter |
| CRON 2. | ||||||||||||||||
| glnK |
*
Sinorhizobium meliloti 1021 Site: position = -214 score = 4.86889 sequence = TGCTTATATTTTAATCA Gene: SMc03806: Nitrogen regulatory protein P-II |
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Rhizobium sp. NGR234 Site: position = -218 score = 3.86047 sequence = TGCCTGTTTTTTAATCT Gene: NGR_c31500: Nitrogen regulatory protein P-II |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -201 score = 3.80883 sequence = TGCGCGTTATTTGTGCG Gene: RL4565: Nitrogen regulatory protein P-II |
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Rhizobium etli CFN 42 Site: position = -200 score = 4.41525 sequence = TGCGCATTATTTGTGCG Gene: RHE_CH03974: Nitrogen regulatory protein P-II |
Gene: Atu2757: Nitrogen regulatory protein P-II |
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Mesorhizobium sp. BNC1 Site: position = -203 score = 4.67744 sequence = TGCACATTTTTTGTTCA Gene: Meso_3237: Nitrogen regulatory protein P-II |
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Mesorhizobium loti MAFF303099 Site: position = -202 score = 5.20856 sequence = TGCATAATTTTTGAGCA Gene: mll4247: Nitrogen regulatory protein P-II |
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*2
Rhodopseudomonas palustris CGA009 Site: position = -240 score = 4.38404 sequence = TGCCTGATTATTGATCA Gene: RPA0274: Nitrogen regulatory protein P-II Gene: RPA0272: Nitrogen regulatory protein P-II |
*2
Bradyrhizobium japonicum USDA 110 Gene: blr0606: Nitrogen regulatory protein P-II Site: position = -180 score = 4.14701 sequence = TGCCCTCATTTTGAGCA Gene: blr0612: Nitrogen regulatory protein P-II |
*2
Bradyrhizobium sp. BTAi1 Site: position = -335 score = 4.6571 sequence = TGCGCAATTTTTGCGCA Gene: BBta_0293: Nitrogen regulatory protein P-II Gene: BBta_0295: Nitrogen regulatory protein P-II |
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Azorhizobium caulinodans ORS 571 Site: position = -241 score = 3.95623 sequence = CGCCTATTTTTAAGGCA Gene: AZC_4227: Nitrogen regulatory protein P-II |
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Xanthobacter autotrophicus Py2 Site: position = -244 score = 4.71057 sequence = AGATCAATAATTAGGCA Gene: Xaut_2209: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| amtB |
Gene: SMc03807: Ammonium transporter |
Gene: NGR_c31490: Ammonium transporter |
Gene: RL4564: Ammonium transporter |
Gene: RHE_CH03973: Ammonium transporter |
Gene: Atu2758: Ammonium transporter |
Gene: Meso_3236: Ammonium transporter |
Gene: mll4246: Ammonium transporter |
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Brucella melitensis 16M Site: position = -195 score = 5.01333 sequence = AGCTTAAATTTTAAGCA Gene: BMEI0167: Ammonium transporter |
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2
Rhodopseudomonas palustris CGA009 Gene: RPA0273: Ammonium transporter Gene: RPA0275: Ammonium transporter |
3
Bradyrhizobium japonicum USDA 110 Gene: blr0608: Ammonium transporter Gene: blr0607: Ammonium transporter Gene: blr0613: Ammonium transporter |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_0292: Ammonium transporter Gene: BBta_0294: Ammonium transporter |
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Gene: AZC_4226: Ammonium transporter |
Gene: Xaut_2208: Ammonium transporter |
Ammonium transporter |
| CRON 3. | ||||||||||||||||
| urtA |
Gene: SMb20605: Urea ABC transporter, substrate-binding component |
Gene: NGR_b21780: Urea ABC transporter, substrate-binding component |
Gene: RL3741: Urea ABC transporter, substrate-binding component |
Gene: RHE_CH03317: Urea ABC transporter, substrate-binding component |
Gene: Atu2414: Urea ABC transporter, substrate-binding component |
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Gene: mll0762: Urea ABC transporter, substrate-binding component |
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Rhodopseudomonas palustris CGA009 Site: position = -246 score = 4.02468 sequence = AGTGCAATAATTAATCA Site: position = -216 score = 4.26189 sequence = TGATCAATTGTTGTGCT Gene: RPA3669: Urea ABC transporter, substrate-binding component |
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Bradyrhizobium japonicum USDA 110 Site: position = -111 score = 4.35681 sequence = TGCTCAATAAATGAACT Site: position = -67 score = 4.91057 sequence = TGCACAAATCTTGAGCA Gene: blr1448: Urea ABC transporter, substrate-binding component |
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Bradyrhizobium sp. BTAi1 Site: position = -175 score = 4.68599 sequence = TGCTCAAAAAATGGGCT Site: position = -219 score = 3.86542 sequence = TGCACAAATTTGGCGCT Site: position = -248 score = 4.35645 sequence = TGCTTTAAAATTAGTCA Gene: BBta_7018: Urea ABC transporter, substrate-binding component |
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Azorhizobium caulinodans ORS 571 Site: position = -179 score = 4.58036 sequence = TGCCTAAATTATAGTCA Gene: AZC_1758: Urea ABC transporter, substrate-binding component |
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Xanthobacter autotrophicus Py2 Site: position = -331 score = 3.80334 sequence = TGCCCTCAAAATAGGCA Gene: Xaut_4149: Urea ABC transporter, substrate-binding component |
Urea ABC transporter, substrate-binding component |
| urtB |
Gene: SMb20604: Urea ABC transporter, permease component 1 |
Gene: NGR_b21770: Urea ABC transporter, permease component 1 |
Gene: RL3740: Urea ABC transporter, permease component 1 |
Gene: RHE_CH03316: Urea ABC transporter, permease component 1 |
Gene: Atu2413: Urea ABC transporter, permease component 1 |
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Gene: mll0760: Urea ABC transporter, permease component 1 |
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Gene: RPA3668: Urea ABC transporter, permease component 1 |
Gene: blr1449: Urea ABC transporter, permease component 1 |
Gene: BBta_7017: Urea ABC transporter, permease component 1 |
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Gene: AZC_1759: Urea ABC transporter, permease component 1 |
Gene: Xaut_4150: Urea ABC transporter, permease component 1 |
Urea ABC transporter, permease component 1 |
| urtC |
Gene: SMb20603: Urea ABC transporter, permease component 2 |
Gene: NGR_b21760: Urea ABC transporter, permease component 2 |
Gene: RL3739: Urea ABC transporter, permease component 2 |
Gene: RHE_CH03315: Urea ABC transporter, permease component 2 |
Gene: Atu2412: Urea ABC transporter, permease component 2 |
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Gene: mll0759: Urea ABC transporter, permease component 2 |
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Gene: RPA3667: Urea ABC transporter, permease component 2 |
Gene: blr1450: Urea ABC transporter, permease component 2 |
Gene: BBta_7016: Urea ABC transporter, permease component 2 |
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Gene: AZC_1760: Urea ABC transporter, permease component 2 |
Gene: Xaut_4151: Urea ABC transporter, permease component 2 |
Urea ABC transporter, permease component 2 |
| urtD |
Gene: SMb20602: Urea ABC transporter, ATP-binding component 1 |
Gene: NGR_b21750: Urea ABC transporter, ATP-binding component 1 |
Gene: RL3738: Urea ABC transporter, ATP-binding component 1 |
Gene: RHE_CH03314: Urea ABC transporter, ATP-binding component 1 |
Gene: Atu2411: Urea ABC transporter, ATP-binding component 1 |
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Gene: mll0758: Urea ABC transporter, ATP-binding component 1 |
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Gene: RPA3666: Urea ABC transporter, ATP-binding component 1 |
Gene: blr1451: Urea ABC transporter, ATP-binding component 1 |
Gene: BBta_7015: Urea ABC transporter, ATP-binding component 1 |
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Gene: AZC_1761: Urea ABC transporter, ATP-binding component 1 |
Gene: Xaut_4152: Urea ABC transporter, ATP-binding component 1 |
Urea ABC transporter, ATP-binding component 1 |
| urtE |
Gene: SMb21707: Urea ABC transporter, ATP-binding component 2 |
Gene: NGR_b21740: Urea ABC transporter, ATP-binding component 2 |
Gene: RL3737: Urea ABC transporter, ATP-binding component 2 |
Gene: RHE_CH03312: Urea ABC transporter, ATP-binding component 2 |
Gene: Atu2410: Urea ABC transporter, ATP-binding component 2 |
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Gene: mll0756: Urea ABC transporter, ATP-binding component 2 |
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Gene: RPA3665: Urea ABC transporter, ATP-binding component 2 |
Gene: blr1452: Urea ABC transporter, ATP-binding component 2 |
Gene: BBta_7014: Urea ABC transporter, ATP-binding component 2 |
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Gene: AZC_1762: Urea ABC transporter, ATP-binding component 2 |
Gene: Xaut_4153: Urea ABC transporter, ATP-binding component 2 |
Urea ABC transporter, ATP-binding component 2 |
| ureD |
Gene: SMc01942: Urease accessory protein, UreD |
Gene: NGR_c25060: Urease accessory protein, UreD |
Gene: RL3736: Urease accessory protein, UreD |
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Gene: Atu2408: Urease accessory protein, UreD |
Gene: Meso_2680: Urease accessory protein, UreD |
Gene: mll4949: Urease accessory protein, UreD |
Gene: BMEI1655: Urease accessory protein, UreD |
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Gene: RPA3664: Urease accessory protein, UreD |
Gene: blr1453: Urease accessory protein, UreD |
Gene: BBta_7013: Urease accessory protein, UreD |
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Gene: AZC_1763: Urease accessory protein, UreD |
Gene: Xaut_4154: Urease accessory protein, UreD |
Urease accessory protein, UreD |
| ureA |
Gene: SMc01941: Urease, gamma subunit (EC 3.5.1.5) |
Gene: NGR_c25050: Urease, gamma subunit (EC 3.5.1.5) |
Gene: RL3735: Urease, gamma subunit (EC 3.5.1.5) |
Gene: RHE_CH03310: Urease, gamma subunit (EC 3.5.1.5) |
Gene: Atu2407: Urease, gamma subunit (EC 3.5.1.5) |
Gene: Meso_2681: Urease, gamma subunit (EC 3.5.1.5) |
Gene: mll4948: Urease, gamma subunit (EC 3.5.1.5) |
Gene: BMEI1654: Urease, gamma subunit (EC 3.5.1.5) |
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Gene: RPA3663: Urease, gamma subunit (EC 3.5.1.5) |
Gene: blr1454: Urease, gamma subunit (EC 3.5.1.5) |
Gene: BBta_7012: Urease, gamma subunit (EC 3.5.1.5) |
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Gene: AZC_1764: Urease, gamma subunit (EC 3.5.1.5) |
Gene: Xaut_4155: Urease, gamma subunit (EC 3.5.1.5) |
Urease, gamma subunit (EC 3.5.1.5) |
| ureB |
Gene: SMc01939: Urease, beta subunit (EC 3.5.1.5) |
Gene: NGR_c25030: Urease, beta subunit (EC 3.5.1.5) |
Gene: RL3734: Urease, beta subunit (EC 3.5.1.5) |
Gene: RHE_CH03308: Urease, beta subunit (EC 3.5.1.5) |
Gene: Atu2405: Urease, beta subunit (EC 3.5.1.5) |
Gene: Meso_2683: Urease, beta subunit (EC 3.5.1.5) |
Gene: msl4944: Urease, beta subunit (EC 3.5.1.5) |
Gene: BMEI1653: Urease, beta subunit (EC 3.5.1.5) |
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Gene: RPA3662: Urease, beta subunit (EC 3.5.1.5) |
Gene: blr1455: Urease, beta subunit (EC 3.5.1.5) |
Gene: BBta_7011: Urease, beta subunit (EC 3.5.1.5) |
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Urease, beta subunit (EC 3.5.1.5) |
| RPA3661 |
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Gene: RPA3661: Metal dependent phosphohydrolase |
Gene: blr1456: Metal dependent phosphohydrolase |
Gene: BBta_7010: Metal dependent phosphohydrolase |
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Metal dependent phosphohydrolase |
| ureC |
Gene: SMc01837: Urease, alpha subunit (EC 3.5.1.5) |
Gene: NGR_c25000: Urease, alpha subunit (EC 3.5.1.5) |
Gene: RL3731: Urease, alpha subunit (EC 3.5.1.5) |
Gene: RHE_CH03305: Urease, alpha subunit (EC 3.5.1.5) |
Gene: Atu2401: Urease, alpha subunit (EC 3.5.1.5) |
Gene: Meso_2684: Urease, alpha subunit (EC 3.5.1.5) |
Gene: mll4940: Urease, alpha subunit (EC 3.5.1.5) |
Gene: BMEI1652: Urease, alpha subunit (EC 3.5.1.5) |
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Gene: RPA3660: Urease, alpha subunit (EC 3.5.1.5) |
Gene: blr1457: Urease, alpha subunit (EC 3.5.1.5) |
Gene: BBta_7009: Urease, alpha subunit (EC 3.5.1.5) |
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Gene: AZC_1766: Urease, alpha subunit (EC 3.5.1.5) |
Gene: Xaut_4156: Urease, alpha subunit (EC 3.5.1.5) |
Urease, alpha subunit (EC 3.5.1.5) |
| CRON 4. | ||||||||||||||||
| uctA |
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*
Rhizobium sp. NGR234 Site: position = -286 score = 4.68037 sequence = TGATCATTTTATAAGCA Site: position = -265 score = 4.58342 sequence = TGCACAAATTATGGGCG Gene: NGR_b03900: Urea carboxylase-related ABC transporter, substrate-binding component |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -299 score = 3.97402 sequence = CGCACATTTTCTGTGCA Site: position = -222 score = 3.79759 sequence = TGATTTATAATTTGGCA Gene: pRL90288: Urea carboxylase-related ABC transporter, substrate-binding component |
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Rhizobium etli CFN 42 Site: position = -299 score = 4.7398 sequence = TGCTCAAAAATTTAGCA Gene: RHE_PE00123: Urea carboxylase-related ABC transporter, substrate-binding component |
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Rhodopseudomonas palustris CGA009 Site: position = -243 score = 3.74305 sequence = TGCACATTGTTTGTGCC Gene: RPA1410: Urea carboxylase-related ABC transporter, substrate-binding component |
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*
Bradyrhizobium sp. BTAi1 Site: position = -264 score = 3.95388 sequence = TGCCAATTTCTTGGGCA Gene: BBta_0739: Urea carboxylase-related ABC transporter, substrate-binding component |
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*
Azorhizobium caulinodans ORS 571 Site: position = -230 score = 3.84209 sequence = TGGCTAAAATTTAGACA Gene: AZC_4397: Urea carboxylase-related ABC transporter, substrate-binding component |
*
Xanthobacter autotrophicus Py2 Site: position = -300 score = 4.84236 sequence = TGCTTAAATTTTGATCG Gene: Xaut_1227: Urea carboxylase-related ABC transporter, substrate-binding component |
Urea carboxylase-related ABC transporter, substrate-binding component |
| uctB |
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Gene: NGR_b03890: Urea carboxylase-related ABC transporter, permease component |
Gene: pRL90289: Urea carboxylase-related ABC transporter, permease component |
Gene: RHE_PE00122: Urea carboxylase-related ABC transporter, permease component |
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Gene: RPA1409: Urea carboxylase-related ABC transporter, permease component |
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Gene: BBta_0741: Urea carboxylase-related ABC transporter, permease component |
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Gene: AZC_4398: Urea carboxylase-related ABC transporter, permease component |
Gene: Xaut_1226: Urea carboxylase-related ABC transporter, permease component |
Urea carboxylase-related ABC transporter, permease component |
| uctC |
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Gene: NGR_b03880: Urea carboxylase-related ABC transporter, ATP-binding component |
Gene: pRL90290: Urea carboxylase-related ABC transporter, ATP-binding component |
Gene: RHE_PE00121: Urea carboxylase-related ABC transporter, ATP-binding component |
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Gene: RPA1408: Urea carboxylase-related ABC transporter, ATP-binding component |
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Gene: BBta_0742: Urea carboxylase-related ABC transporter, ATP-binding component |
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Gene: AZC_4399: Urea carboxylase-related ABC transporter, ATP-binding component |
Gene: Xaut_1225: Urea carboxylase-related ABC transporter, ATP-binding component |
Urea carboxylase-related ABC transporter, ATP-binding component |
| uahC |
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Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| uahB |
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Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
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Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| uahA |
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Gene: pRL90293: Urea carboxylase (EC 6.3.4.6) |
Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6) |
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Gene: RPA1405: Urea carboxylase (EC 6.3.4.6) |
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Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6) |
Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6) |
Urea carboxylase (EC 6.3.4.6) |
| atzF |
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Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54) |
Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54) |
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Allophanate hydrolase (EC 3.5.1.54) |
| atzF2 |
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Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54) |
Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54) |
Allophanate hydrolase (EC 3.5.1.54) |
| speB |
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Gene: NGR_b03870: Agmatinase (EC 3.5.3.11) |
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Gene: BBta_0743: Agmatinase (EC 3.5.3.11) |
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Agmatinase (EC 3.5.3.11) |
| NGR_b03860 |
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Gene: NGR_b03860: Hypothetical protein |
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Gene: BBta_0744: Hypothetical protein |
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Hypothetical protein |
| CRON 5. | ||||||||||||||||
| glnB |
*
Sinorhizobium meliloti 1021 Site: position = -286 score = 4.35868 sequence = TGACTAAGAAATGTGCA Site: position = -254 score = 4.10616 sequence = TGCTCAAATAACATGCT Gene: SMc00947: Nitrogen regulatory protein P-II |
*
Rhizobium sp. NGR234 Site: position = -287 score = 4.31792 sequence = TGATGACTTATTATGCA Site: position = -255 score = 4.07414 sequence = TGCTCAAATAACAGGCT Gene: NGR_c14750: Nitrogen regulatory protein P-II |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -269 score = 4.15204 sequence = TGCCTATATTTTCATCT Gene: RL2393: Nitrogen regulatory protein P-II |
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Rhizobium etli CFN 42 Site: position = -287 score = 3.84751 sequence = AGACCCAAATTTGTGCA Site: position = -268 score = 4.40488 sequence = TGCTTATCTTTTAATCA Gene: RHE_CH02103: Nitrogen regulatory protein P-II |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -297 score = 4.11985 sequence = AGACCAAATAATAGTCA Site: position = -278 score = 4.47473 sequence = TGCACAAAATATAAACA Gene: Atu1769: Nitrogen regulatory protein P-II |
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Mesorhizobium loti MAFF303099 Site: position = -222 score = 4.52948 sequence = TGCCTAATTCTTATGCG Gene: mll0345: Nitrogen regulatory protein P-II |
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Brucella melitensis 16M Site: position = -220 score = 5.20311 sequence = TGCATAATTTTTAAGCA Gene: BMEI0978: Nitrogen regulatory protein P-II |
Gene: BQ07880: Nitrogen regulatory protein P-II |
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Rhodopseudomonas palustris CGA009 Site: position = -320 score = 4.84201 sequence = TGCTGAATAATTGATCA Gene: RPA2966: Nitrogen regulatory protein P-II |
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Bradyrhizobium japonicum USDA 110 Site: position = -290 score = 3.63492 sequence = TGCCTATTTCGTAGTCT Gene: blr4948: Nitrogen regulatory protein P-II |
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Bradyrhizobium sp. BTAi1 Site: position = -300 score = 3.75361 sequence = TGCACAACGTTTGATCT Gene: BBta_4580: Nitrogen regulatory protein P-II |
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Nitrobacter winogradskyi Nb-255 Site: position = -298 score = 4.47034 sequence = CGCACAAAAATTGAACA Gene: Nwi_1903: Nitrogen regulatory protein P-II |
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Azorhizobium caulinodans ORS 571 Site: position = -134 score = 4.40436 sequence = CGCATACTATTTAGGCA Gene: AZC_1602: Nitrogen regulatory protein P-II |
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Xanthobacter autotrophicus Py2 Site: position = -138 score = 4.18316 sequence = AGCCTATTTCATGAGCA Gene: Xaut_3586: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| glnA |
Gene: SMc00948: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: NGR_c14740: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: RL2392: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: RHE_CH02102: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Atu1770: Glutamine synthetase type I (EC 6.3.1.2) |
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Gene: mll0343: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: BMEI0979: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: BQ07890: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: RPA2967: Glutamine synthetase type I (EC 6.3.1.2) |
2
Bradyrhizobium japonicum USDA 110 Gene: blr4949: Glutamine synthetase type I (EC 6.3.1.2) Gene: blr4835: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: BBta_4581: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Nwi_1904: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: AZC_1601: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Xaut_3585: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| CRON 6. | ||||||||||||||||
| dppA |
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*
Rhodopseudomonas palustris CGA009 Site: position = -132 score = 4.88022 sequence = TGCACATTATTTATGCA Gene: RPA1473: Dipeptide ABC transporter, substrate-binding component |
*
Bradyrhizobium japonicum USDA 110 Site: position = -190 score = 4.54965 sequence = CGATGAAATTTTGAGCA Gene: blr1036: Dipeptide ABC transporter, substrate-binding component |
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Bradyrhizobium sp. BTAi1 Site: position = -161 score = 4.84695 sequence = AGCTCAATAAATAAGCA Gene: BBta_0716: Dipeptide ABC transporter, substrate-binding component |
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*
Azorhizobium caulinodans ORS 571 Site: position = -159 score = 4.8327 sequence = TGCTCAATTTTTAATCT Gene: AZC_1511: Dipeptide ABC transporter, substrate-binding component |
*
Xanthobacter autotrophicus Py2 Site: position = -159 score = 4.89613 sequence = TGCGTAATTATTGTGCA Gene: Xaut_4660: Dipeptide ABC transporter, substrate-binding component |
Dipeptide ABC transporter, substrate-binding component |
| dppB |
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Gene: RPA1472: Dipeptide ABC transporter, permease component 1 |
Gene: blr1037: Dipeptide ABC transporter, permease component 1 |
Gene: BBta_0717: Dipeptide ABC transporter, permease component 1 |
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Gene: AZC_1512: Dipeptide ABC transporter, permease component 1 |
Gene: Xaut_4659: Dipeptide ABC transporter, permease component 1 |
Dipeptide ABC transporter, permease component 1 |
| dppC |
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Gene: RPA1471: Dipeptide ABC transporter, permease component 2 |
Gene: blr1038: Dipeptide ABC transporter, permease component 2 |
Gene: BBta_0718: Dipeptide ABC transporter, permease component 2 |
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Gene: AZC_1513: Dipeptide ABC transporter, permease component 2 |
Gene: Xaut_4658: Dipeptide ABC transporter, permease component 2 |
Dipeptide ABC transporter, permease component 2 |
| dppDE |
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Gene: RPA1470: Dipeptide ABC transporter, ATP-binding component |
Gene: blr1039: Dipeptide ABC transporter, ATP-binding component |
Gene: BBta_0719: Dipeptide ABC transporter, ATP-binding component |
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Gene: AZC_1514: Dipeptide ABC transporter, ATP-binding component |
Gene: Xaut_4657: Dipeptide ABC transporter, ATP-binding component |
Dipeptide ABC transporter, ATP-binding component |
| CRON 7. | ||||||||||||||||
| nifR3 |
*
Sinorhizobium meliloti 1021 Site: position = -25 score = 3.96229 sequence = TGTCTAAAAATAGTGCA Gene: SMc01041: Predicted oxidoreductase, FAD binding |
*
Rhizobium sp. NGR234 Site: position = -25 score = 3.96229 sequence = TGTCTAAAAATAGTGCA Gene: NGR_c12950: Predicted oxidoreductase, FAD binding |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -25 score = 3.78543 sequence = TGGCTAAAAATAATGCA Gene: RL2255: Predicted oxidoreductase, FAD binding |
*
Rhizobium etli CFN 42 Site: position = -88 score = 3.78543 sequence = TGGCTAAAAATAATGCA Gene: RHE_CH01946: Predicted oxidoreductase, FAD binding |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -31 score = 3.95685 sequence = TGTCTAAAAATAATGCA Gene: Atu1444: Predicted oxidoreductase, FAD binding |
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Gene: mlr0396: Predicted oxidoreductase, FAD binding |
*
Brucella melitensis 16M Site: position = -48 score = 3.83212 sequence = TGATTAAACTGTATGCG Site: position = -21 score = 3.91456 sequence = TGCATATCAAATAGGCG Gene: BMEI0864: Predicted oxidoreductase, FAD binding |
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*
Rhodopseudomonas palustris CGA009 Site: position = -92 score = 4.59201 sequence = TGCTCAAACATTGAGCG Gene: RPA2591: Predicted oxidoreductase, FAD binding |
Gene: blr4486: Predicted oxidoreductase, FAD binding |
*
Bradyrhizobium sp. BTAi1 Site: position = -149 score = 4.50857 sequence = TGCCCAAGAATTGTGCT Gene: BBta_4068: Predicted oxidoreductase, FAD binding |
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Nitrobacter winogradskyi Nb-255 Site: position = -47 score = 4.69725 sequence = TGCCTAATAAATAAGCT Gene: Nwi_1443: Predicted oxidoreductase, FAD binding |
Gene: AZC_3088: Predicted oxidoreductase, FAD binding |
*
Xanthobacter autotrophicus Py2 Site: position = -39 score = 3.8214 sequence = TGTCTAAGATGTAGGCA Gene: Xaut_4401: Predicted oxidoreductase, FAD binding |
Predicted oxidoreductase, FAD binding |
| ntrB |
Gene: SMc01042: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: NGR_c12960: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: RL2256: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: RHE_CH01947: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Atu1445: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
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Gene: mlr0397: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: BMEI0865: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
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Gene: RPA2592: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: blr4487: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: BBta_4069: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Nwi_1444: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: AZC_3087: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Xaut_4400: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: SMc01043: Nitrogen regulation protein NR(I), Fis family |
Gene: NGR_c12970: Nitrogen regulation protein NR(I), Fis family |
Gene: RL2257: Nitrogen regulation protein NR(I), Fis family |
Gene: RHE_CH01948: Nitrogen regulation protein NR(I), Fis family |
Gene: Atu1446: Nitrogen regulation protein NR(I), Fis family |
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Gene: mlr0398: Nitrogen regulation protein NR(I), Fis family |
Gene: BMEI0866: Nitrogen regulation protein NR(I), Fis family |
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Gene: RPA2593: Nitrogen regulation protein NR(I), Fis family |
Gene: blr4488: Nitrogen regulation protein NR(I), Fis family |
Gene: BBta_4070: Nitrogen regulation protein NR(I), Fis family |
Gene: Nwi_1445: Nitrogen regulation protein NR(I), Fis family |
Gene: AZC_3086: Nitrogen regulation protein NR(I), Fis family |
Gene: Xaut_4399: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |