Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Bradyrhizobium sp. BTAi1

Properties
Regulator type: Transcription factor
TF locus tag: BBta_4070
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 30
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -300
Score: 3.8
Sequence: TGCACAACGTTTGATCT
Locus tag: BBta_4580
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: BBta_4581
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
BBta_4580
glnB
Nitrogen regulatory protein P-II
BBta_4581
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -149
Score: 4.5
Sequence: TGCCCAAGAATTGTGCT
Locus tag: BBta_4068
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: BBta_4069
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: BBta_4070
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
BBta_4068
nifR3
Predicted oxidoreductase, FAD binding
BBta_4069
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
BBta_4070
ntrC
Nitrogen regulation protein NR(I), Fis family
Position: -264
Score: 4
Sequence: TGCCAATTTCTTGGGCA
Locus tag: BBta_0739
Name: uctA
Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
BBta_0739
uctA
Urea carboxylase-related ABC transporter, substrate-binding component
Position: -248
Score: 4.4
Sequence: TGCTTTAAAATTAGTCA
Position: -219
Score: 3.9
Sequence: TGCACAAATTTGGCGCT
Position: -175
Score: 4.7
Sequence: TGCTCAAAAAATGGGCT
Locus tag: BBta_7018
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: BBta_7017
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: BBta_7016
Name: urtC
Funciton: Urea ABC transporter, permease component 2
Locus tag: BBta_7015
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: BBta_7014
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 2
Locus tag: BBta_7013
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: BBta_7012
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: BBta_7011
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: BBta_7010
Name: null
Funciton: Metal dependent phosphohydrolase
Locus tag: BBta_7009
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
BBta_7018
urtA
Urea ABC transporter, substrate-binding component
BBta_7017
urtB
Urea ABC transporter, permease component 1
BBta_7016
urtC
Urea ABC transporter, permease component 2
BBta_7015
urtD
Urea ABC transporter, ATP-binding component 1
BBta_7014
urtE
Urea ABC transporter, ATP-binding component 2
BBta_7013
ureD
Urease accessory protein, UreD
BBta_7012
ureA
Urease, gamma subunit (EC 3.5.1.5)
BBta_7011
ureB
Urease, beta subunit (EC 3.5.1.5)
BBta_7010
Metal dependent phosphohydrolase
BBta_7009
ureC
Urease, alpha subunit (EC 3.5.1.5)
Position: -335
Score: 4.7
Sequence: TGCGCAATTTTTGCGCA
Locus tag: BBta_0293
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: BBta_0292
Name: amtB
Funciton: Ammonium transporter
BBta_0293
glnK
Nitrogen regulatory protein P-II
BBta_0292
amtB
Ammonium transporter
Position: -161
Score: 4.8
Sequence: AGCTCAATAAATAAGCA
Locus tag: BBta_0716
Name: dppA
Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: BBta_0717
Name: dppB
Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: BBta_0718
Name: dppC
Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: BBta_0719
Name: dppDE
Funciton: Dipeptide ABC transporter, ATP-binding component
BBta_0716
dppA
Dipeptide ABC transporter, substrate-binding component
BBta_0717
dppB
Dipeptide ABC transporter, permease component 1
BBta_0718
dppC
Dipeptide ABC transporter, permease component 2
BBta_0719
dppDE
Dipeptide ABC transporter, ATP-binding component
Position: -314
Score: 4.4
Sequence: CGCCCACTTTTTGTGCA
Locus tag: BBta_2817
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: BBta_2819
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: BBta_2820
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: BBta_2821
Name: hmp
Funciton: Nitric oxide dioxygenase
Locus tag: BBta_2822
Name: nasB
Funciton: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Locus tag: BBta_2823
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
BBta_2817
nrtA
Nitrate ABC transporter, substrate-binding component
BBta_2819
nrtB
Nitrate ABC transporter, permease component
BBta_2820
nrtC
Nitrate ABC transporter, ATP-binding component
BBta_2821
hmp
Nitric oxide dioxygenase
BBta_2822
nasB
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
BBta_2823
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Position: -278
Score: 4.1
Sequence: CGTACAAATTTTAGGCG
Locus tag: BBta_4137
Name: nirA
Funciton: Ferredoxin--nitrite reductase (EC 1.7.7.1)
Locus tag: BBta_4136
Name: nasB2
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
BBta_4137
nirA
Ferredoxin--nitrite reductase (EC 1.7.7.1)
BBta_4136
nasB2
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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