Regulon of NtrC in Rhodopseudomonas palustris CGA009
| Regulator type: | Transcription factor |
| TF locus tag: | RPA2593 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -320
Score: 4.8 Sequence: TGCTGAATAATTGATCA
Locus tag: RPA2966
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: RPA2967
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -92
Score: 4.6 Sequence: TGCTCAAACATTGAGCG
Locus tag: RPA2591
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RPA2592
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RPA2593
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -246
Score: 4 Sequence: AGTGCAATAATTAATCA
Position: -216
Score: 4.3 Sequence: TGATCAATTGTTGTGCT
Locus tag: RPA3669
Name: urtA Funciton: Urea ABC transporter, substrate-binding component
Locus tag: RPA3668
Name: urtB Funciton: Urea ABC transporter, permease component 1
Locus tag: RPA3667
Name: urtC Funciton: Urea ABC transporter, permease component 2
Locus tag: RPA3666
Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: RPA3665
Name: urtE Funciton: Urea ABC transporter, ATP-binding component 2
Locus tag: RPA3664
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: RPA3663
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: RPA3662
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: RPA3661
Name: null Funciton: Metal dependent phosphohydrolase
Locus tag: RPA3660
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5) |
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urtA
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Urea ABC transporter, substrate-binding component
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urtB
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Urea ABC transporter, permease component 1
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urtC
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Urea ABC transporter, permease component 2
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urtD
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Urea ABC transporter, ATP-binding component 1
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urtE
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Urea ABC transporter, ATP-binding component 2
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ureD
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Urease accessory protein, UreD
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ureA
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Urease, gamma subunit (EC 3.5.1.5)
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ureB
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Urease, beta subunit (EC 3.5.1.5)
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Metal dependent phosphohydrolase
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ureC
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Urease, alpha subunit (EC 3.5.1.5)
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Position: -243
Score: 3.7 Sequence: TGCACATTGTTTGTGCC
Locus tag: RPA1410
Name: uctA Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: RPA1409
Name: uctB Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: RPA1408
Name: uctC Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: RPA1407
Name: uahC Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RPA1406
Name: uahB Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RPA1405
Name: uahA Funciton: Urea carboxylase (EC 6.3.4.6) |
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uctA
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Urea carboxylase-related ABC transporter, substrate-binding component
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uctB
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Urea carboxylase-related ABC transporter, permease component
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uctC
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Urea carboxylase-related ABC transporter, ATP-binding component
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uahC
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Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
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uahB
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Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
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uahA
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Urea carboxylase (EC 6.3.4.6)
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Position: -240
Score: 4.4 Sequence: TGCCTGATTATTGATCA
Locus tag: RPA0274
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: RPA0275
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -132
Score: 4.9 Sequence: TGCACATTATTTATGCA
Locus tag: RPA1473
Name: dppA Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: RPA1472
Name: dppB Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: RPA1471
Name: dppC Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: RPA1470
Name: dppDE Funciton: Dipeptide ABC transporter, ATP-binding component |
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dppA
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Dipeptide ABC transporter, substrate-binding component
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dppB
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Dipeptide ABC transporter, permease component 1
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dppC
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Dipeptide ABC transporter, permease component 2
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dppDE
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Dipeptide ABC transporter, ATP-binding component
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |