Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Rhodopseudomonas palustris CGA009

Properties
Regulator type: Transcription factor
TF locus tag: RPA2593
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 27
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -320
Score: 4.8
Sequence: TGCTGAATAATTGATCA
Locus tag: RPA2966
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: RPA2967
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
RPA2966
glnB
Nitrogen regulatory protein P-II
RPA2967
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -92
Score: 4.6
Sequence: TGCTCAAACATTGAGCG
Locus tag: RPA2591
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RPA2592
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RPA2593
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
RPA2591
nifR3
Predicted oxidoreductase, FAD binding
RPA2592
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
RPA2593
ntrC
Nitrogen regulation protein NR(I), Fis family
Position: -246
Score: 4
Sequence: AGTGCAATAATTAATCA
Position: -216
Score: 4.3
Sequence: TGATCAATTGTTGTGCT
Locus tag: RPA3669
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: RPA3668
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: RPA3667
Name: urtC
Funciton: Urea ABC transporter, permease component 2
Locus tag: RPA3666
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: RPA3665
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 2
Locus tag: RPA3664
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: RPA3663
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: RPA3662
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: RPA3661
Name: null
Funciton: Metal dependent phosphohydrolase
Locus tag: RPA3660
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
RPA3669
urtA
Urea ABC transporter, substrate-binding component
RPA3668
urtB
Urea ABC transporter, permease component 1
RPA3667
urtC
Urea ABC transporter, permease component 2
RPA3666
urtD
Urea ABC transporter, ATP-binding component 1
RPA3665
urtE
Urea ABC transporter, ATP-binding component 2
RPA3664
ureD
Urease accessory protein, UreD
RPA3663
ureA
Urease, gamma subunit (EC 3.5.1.5)
RPA3662
ureB
Urease, beta subunit (EC 3.5.1.5)
RPA3661
Metal dependent phosphohydrolase
RPA3660
ureC
Urease, alpha subunit (EC 3.5.1.5)
Position: -243
Score: 3.7
Sequence: TGCACATTGTTTGTGCC
Locus tag: RPA1410
Name: uctA
Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: RPA1409
Name: uctB
Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: RPA1408
Name: uctC
Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: RPA1407
Name: uahC
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RPA1406
Name: uahB
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RPA1405
Name: uahA
Funciton: Urea carboxylase (EC 6.3.4.6)
RPA1410
uctA
Urea carboxylase-related ABC transporter, substrate-binding component
RPA1409
uctB
Urea carboxylase-related ABC transporter, permease component
RPA1408
uctC
Urea carboxylase-related ABC transporter, ATP-binding component
RPA1407
uahC
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
RPA1406
uahB
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
RPA1405
uahA
Urea carboxylase (EC 6.3.4.6)
Position: -240
Score: 4.4
Sequence: TGCCTGATTATTGATCA
Locus tag: RPA0274
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: RPA0275
Name: amtB
Funciton: Ammonium transporter
RPA0274
glnK
Nitrogen regulatory protein P-II
RPA0275
amtB
Ammonium transporter
Position: -132
Score: 4.9
Sequence: TGCACATTATTTATGCA
Locus tag: RPA1473
Name: dppA
Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: RPA1472
Name: dppB
Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: RPA1471
Name: dppC
Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: RPA1470
Name: dppDE
Funciton: Dipeptide ABC transporter, ATP-binding component
RPA1473
dppA
Dipeptide ABC transporter, substrate-binding component
RPA1472
dppB
Dipeptide ABC transporter, permease component 1
RPA1471
dppC
Dipeptide ABC transporter, permease component 2
RPA1470
dppDE
Dipeptide ABC transporter, ATP-binding component
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise