Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Rhizobium etli CFN 42

Properties
Regulator type: Transcription factor
TF locus tag: RHE_CH01948
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 21
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -287
Score: 3.8
Sequence: AGACCCAAATTTGTGCA
Position: -268
Score: 4.4
Sequence: TGCTTATCTTTTAATCA
Locus tag: RHE_CH02103
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: RHE_CH02102
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnB
Nitrogen regulatory protein P-II
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -88
Score: 3.8
Sequence: TGGCTAAAAATAATGCA
Locus tag: RHE_CH01946
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RHE_CH01947
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RHE_CH01948
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
nifR3
Predicted oxidoreductase, FAD binding
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -207
Score: 3.8
Sequence: CGAACAAATTCTCAGCA
Locus tag: RHE_CH01783
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: RHE_CH01782
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: RHE_CH01781
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: RHE_CH01780
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
narK
Nitrate/nitrite antiporter
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)

Position: -299
Score: 4.7
Sequence: TGCTCAAAAATTTAGCA
Locus tag: RHE_PE00123
Name: uctA
Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: RHE_PE00122
Name: uctB
Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: RHE_PE00121
Name: uctC
Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: RHE_PE00120
Name: uahC
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RHE_PE00119
Name: uahB
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RHE_PE00118
Name: uahA
Funciton: Urea carboxylase (EC 6.3.4.6)
Locus tag: RHE_PE00117
Name: atzF
Funciton: Allophanate hydrolase (EC 3.5.1.54)
uctA
Urea carboxylase-related ABC transporter, substrate-binding component
uctB
Urea carboxylase-related ABC transporter, permease component
uctC
Urea carboxylase-related ABC transporter, ATP-binding component
uahC
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
uahB
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
uahA
Urea carboxylase (EC 6.3.4.6)
atzF
Allophanate hydrolase (EC 3.5.1.54)

Position: -200
Score: 4.4
Sequence: TGCGCATTATTTGTGCG
Locus tag: RHE_CH03974
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: RHE_CH03973
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter

Position: -289
Score: 4.1
Sequence: CGCACAAATGATAATCA
Position: -261
Score: 4.6
Sequence: TGCATATTAAATAATCA
Locus tag: RHE_PF00452
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: RHE_PF00453
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: RHE_PF00454
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
nrtA
Nitrate ABC transporter, substrate-binding component
nrtB
Nitrate ABC transporter, permease component
nrtC
Nitrate ABC transporter, ATP-binding component
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