Regulon of NtrC in Rhizobium etli CFN 42

Properties
Regulator type:	Transcription factor
TF locus tag:	RHE_CH01948
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhizobiales
Statistics of regulated genes:
- Genes	21
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 86 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -287 Score: 3.8 Sequence: AGACCCAAATTTGTGCA Position: -268 Score: 4.4 Sequence: TGCTTATCTTTTAATCA Locus tag: RHE_CH02103 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: RHE_CH02102 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	RHE_CH02103	glnB	Nitrogen regulatory protein P-II
	RHE_CH02102	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -88 Score: 3.8 Sequence: TGGCTAAAAATAATGCA Locus tag: RHE_CH01946 Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding Locus tag: RHE_CH01947 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: RHE_CH01948 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	RHE_CH01946	nifR3	Predicted oxidoreductase, FAD binding
	RHE_CH01947	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	RHE_CH01948	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -207 Score: 3.8 Sequence: CGAACAAATTCTCAGCA Locus tag: RHE_CH01783 Name: narK Funciton: Nitrate/nitrite antiporter Locus tag: RHE_CH01782 Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4) Locus tag: RHE_CH01781 Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4) Locus tag: RHE_CH01780 Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
	RHE_CH01783	narK	Nitrate/nitrite antiporter
	RHE_CH01782	nasD	Nitrite reductase, large subunit (EC 1.7.1.4)
	RHE_CH01781	nasE	Nitrite reductase, small subunit (EC 1.7.1.4)
	RHE_CH01780	nasA	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Position: -299 Score: 4.7 Sequence: TGCTCAAAAATTTAGCA Locus tag: RHE_PE00123 Name: uctA Funciton: Urea carboxylase-related ABC transporter, substrate-binding component Locus tag: RHE_PE00122 Name: uctB Funciton: Urea carboxylase-related ABC transporter, permease component Locus tag: RHE_PE00121 Name: uctC Funciton: Urea carboxylase-related ABC transporter, ATP-binding component Locus tag: RHE_PE00120 Name: uahC Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) Locus tag: RHE_PE00119 Name: uahB Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) Locus tag: RHE_PE00118 Name: uahA Funciton: Urea carboxylase (EC 6.3.4.6) Locus tag: RHE_PE00117 Name: atzF Funciton: Allophanate hydrolase (EC 3.5.1.54)
	RHE_PE00123	uctA	Urea carboxylase-related ABC transporter, substrate-binding component
	RHE_PE00122	uctB	Urea carboxylase-related ABC transporter, permease component
	RHE_PE00121	uctC	Urea carboxylase-related ABC transporter, ATP-binding component
	RHE_PE00120	uahC	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
	RHE_PE00119	uahB	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
	RHE_PE00118	uahA	Urea carboxylase (EC 6.3.4.6)
	RHE_PE00117	atzF	Allophanate hydrolase (EC 3.5.1.54)
Position: -200 Score: 4.4 Sequence: TGCGCATTATTTGTGCG Locus tag: RHE_CH03974 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: RHE_CH03973 Name: amtB Funciton: Ammonium transporter
	RHE_CH03974	glnK	Nitrogen regulatory protein P-II
	RHE_CH03973	amtB	Ammonium transporter
Position: -289 Score: 4.1 Sequence: CGCACAAATGATAATCA Position: -261 Score: 4.6 Sequence: TGCATATTAAATAATCA Locus tag: RHE_PF00452 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: RHE_PF00453 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: RHE_PF00454 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component
	RHE_PF00452	nrtA	Nitrate ABC transporter, substrate-binding component
	RHE_PF00453	nrtB	Nitrate ABC transporter, permease component
	RHE_PF00454	nrtC	Nitrate ABC transporter, ATP-binding component

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Rhizobium etli CFN 42

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --