Regulon of NtrC in Rhizobium etli CFN 42
| Regulator type: | Transcription factor |
| TF locus tag: | RHE_CH01948 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -287
Score: 3.8 Sequence: AGACCCAAATTTGTGCA
Position: -268
Score: 4.4 Sequence: TGCTTATCTTTTAATCA
Locus tag: RHE_CH02103
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: RHE_CH02102
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -88
Score: 3.8 Sequence: TGGCTAAAAATAATGCA
Locus tag: RHE_CH01946
Name: nifR3 Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RHE_CH01947
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RHE_CH01948
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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nifR3
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Predicted oxidoreductase, FAD binding
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -207
Score: 3.8 Sequence: CGAACAAATTCTCAGCA
Locus tag: RHE_CH01783
Name: narK Funciton: Nitrate/nitrite antiporter
Locus tag: RHE_CH01782
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: RHE_CH01781
Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: RHE_CH01780
Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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narK
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Nitrate/nitrite antiporter
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nasA
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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Position: -299
Score: 4.7 Sequence: TGCTCAAAAATTTAGCA
Locus tag: RHE_PE00123
Name: uctA Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: RHE_PE00122
Name: uctB Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: RHE_PE00121
Name: uctC Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: RHE_PE00120
Name: uahC Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RHE_PE00119
Name: uahB Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: RHE_PE00118
Name: uahA Funciton: Urea carboxylase (EC 6.3.4.6)
Locus tag: RHE_PE00117
Name: atzF Funciton: Allophanate hydrolase (EC 3.5.1.54) |
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uctA
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Urea carboxylase-related ABC transporter, substrate-binding component
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uctB
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Urea carboxylase-related ABC transporter, permease component
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uctC
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Urea carboxylase-related ABC transporter, ATP-binding component
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uahC
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Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
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uahB
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Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
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uahA
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Urea carboxylase (EC 6.3.4.6)
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atzF
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Allophanate hydrolase (EC 3.5.1.54)
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Position: -200
Score: 4.4 Sequence: TGCGCATTATTTGTGCG
Locus tag: RHE_CH03974
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: RHE_CH03973
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -289
Score: 4.1 Sequence: CGCACAAATGATAATCA
Position: -261
Score: 4.6 Sequence: TGCATATTAAATAATCA
Locus tag: RHE_PF00452
Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: RHE_PF00453
Name: nrtB Funciton: Nitrate ABC transporter, permease component
Locus tag: RHE_PF00454
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component |
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nrtA
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Nitrate ABC transporter, substrate-binding component
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nrtB
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Nitrate ABC transporter, permease component
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nrtC
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Nitrate ABC transporter, ATP-binding component
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |