Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Xanthobacter autotrophicus Py2

Properties
Regulator type: Transcription factor
TF locus tag: Xaut_4399
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 42
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -292
Score: 3.9
Sequence: TGCCCAATCCATAAGCT
Position: -270
Score: 4.6
Sequence: TGCATATTTTTTGTGCG
Locus tag: Xaut_1084
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Xaut_1083
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Xaut_1082
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: Xaut_1081
Name: Xaut_1081
Funciton: Hypothetical protein
Locus tag: Xaut_1080
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Xaut_1079
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: Xaut_1078
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Locus tag: Xaut_1077
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Xaut_1084
nrtA
Nitrate ABC transporter, substrate-binding component
Xaut_1083
nrtB
Nitrate ABC transporter, permease component
Xaut_1082
nrtC
Nitrate ABC transporter, ATP-binding component
Xaut_1081
Xaut_1081
Hypothetical protein
Xaut_1080
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
Xaut_1079
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
Xaut_1078
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Xaut_1077
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -312
Score: 3.8
Sequence: CGCACAATTTGAATGCA
Position: -252
Score: 4.4
Sequence: CGCCCAAATTTTCATCA
Locus tag: Xaut_2504
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Xaut_2503
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Xaut_2502
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: Xaut_2501
Name: hmp
Funciton: Nitric oxide dioxygenase
Locus tag: Xaut_2500
Name: nasB
Funciton: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Locus tag: Xaut_2499
Name: nirA
Funciton: Ferredoxin--nitrite reductase (EC 1.7.7.1)
Locus tag: Xaut_2498
Name: nasB2
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Locus tag: Xaut_2497
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Xaut_2504
nrtA
Nitrate ABC transporter, substrate-binding component
Xaut_2503
nrtB
Nitrate ABC transporter, permease component
Xaut_2502
nrtC
Nitrate ABC transporter, ATP-binding component
Xaut_2501
hmp
Nitric oxide dioxygenase
Xaut_2500
nasB
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Xaut_2499
nirA
Ferredoxin--nitrite reductase (EC 1.7.7.1)
Xaut_2498
nasB2
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Xaut_2497
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Position: -138
Score: 4.2
Sequence: AGCCTATTTCATGAGCA
Locus tag: Xaut_3586
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: Xaut_3585
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Xaut_3586
glnB
Nitrogen regulatory protein P-II
Xaut_3585
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -39
Score: 3.8
Sequence: TGTCTAAGATGTAGGCA
Locus tag: Xaut_4401
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: Xaut_4400
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Xaut_4399
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Xaut_4401
nifR3
Predicted oxidoreductase, FAD binding
Xaut_4400
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Xaut_4399
ntrC
Nitrogen regulation protein NR(I), Fis family
Position: -331
Score: 3.8
Sequence: TGCCCTCAAAATAGGCA
Locus tag: Xaut_4149
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: Xaut_4150
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: Xaut_4151
Name: urtC
Funciton: Urea ABC transporter, permease component 2
Locus tag: Xaut_4152
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: Xaut_4153
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 2
Locus tag: Xaut_4154
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: Xaut_4155
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: Xaut_4156
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
Xaut_4149
urtA
Urea ABC transporter, substrate-binding component
Xaut_4150
urtB
Urea ABC transporter, permease component 1
Xaut_4151
urtC
Urea ABC transporter, permease component 2
Xaut_4152
urtD
Urea ABC transporter, ATP-binding component 1
Xaut_4153
urtE
Urea ABC transporter, ATP-binding component 2
Xaut_4154
ureD
Urease accessory protein, UreD
Xaut_4155
ureA
Urease, gamma subunit (EC 3.5.1.5)
Xaut_4156
ureC
Urease, alpha subunit (EC 3.5.1.5)
Position: -159
Score: 4.9
Sequence: TGCGTAATTATTGTGCA
Locus tag: Xaut_4660
Name: dppA
Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: Xaut_4659
Name: dppB
Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: Xaut_4658
Name: dppC
Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: Xaut_4657
Name: dppDE
Funciton: Dipeptide ABC transporter, ATP-binding component
Xaut_4660
dppA
Dipeptide ABC transporter, substrate-binding component
Xaut_4659
dppB
Dipeptide ABC transporter, permease component 1
Xaut_4658
dppC
Dipeptide ABC transporter, permease component 2
Xaut_4657
dppDE
Dipeptide ABC transporter, ATP-binding component
Position: -300
Score: 4.8
Sequence: TGCTTAAATTTTGATCG
Locus tag: Xaut_1227
Name: uctA
Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: Xaut_1226
Name: uctB
Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: Xaut_1225
Name: uctC
Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: Xaut_1224
Name: uahC
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: Xaut_1223
Name: uahB
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: Xaut_1222
Name: uahA
Funciton: Urea carboxylase (EC 6.3.4.6)
Locus tag: Xaut_1221
Name: atzF2
Funciton: Allophanate hydrolase (EC 3.5.1.54)
Xaut_1227
uctA
Urea carboxylase-related ABC transporter, substrate-binding component
Xaut_1226
uctB
Urea carboxylase-related ABC transporter, permease component
Xaut_1225
uctC
Urea carboxylase-related ABC transporter, ATP-binding component
Xaut_1224
uahC
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Xaut_1223
uahB
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Xaut_1222
uahA
Urea carboxylase (EC 6.3.4.6)
Xaut_1221
atzF2
Allophanate hydrolase (EC 3.5.1.54)
Position: -244
Score: 4.7
Sequence: AGATCAATAATTAGGCA
Locus tag: Xaut_2209
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Xaut_2208
Name: amtB
Funciton: Ammonium transporter
Xaut_2209
glnK
Nitrogen regulatory protein P-II
Xaut_2208
amtB
Ammonium transporter
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