Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Bradyrhizobium japonicum USDA 110

Properties
Regulator type: Transcription factor
TF locus tag: blr4488
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 24
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -202
Score: 4
Sequence: CGTCTAAATTTTGGGCT
Locus tag: bll4571
Name: nirA
Funciton: Ferredoxin--nitrite reductase (EC 1.7.7.1)
Locus tag: bll4570
Name: nasB2
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
nirA
Ferredoxin--nitrite reductase (EC 1.7.7.1)
nasB2
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)

Position: -111
Score: 4.4
Sequence: TGCTCAATAAATGAACT
Position: -67
Score: 4.9
Sequence: TGCACAAATCTTGAGCA
Locus tag: blr1448
Name: urtA
Funciton: Urea ABC transporter, substrate-binding component
Locus tag: blr1449
Name: urtB
Funciton: Urea ABC transporter, permease component 1
Locus tag: blr1450
Name: urtC
Funciton: Urea ABC transporter, permease component 2
Locus tag: blr1451
Name: urtD
Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: blr1452
Name: urtE
Funciton: Urea ABC transporter, ATP-binding component 2
Locus tag: blr1453
Name: ureD
Funciton: Urease accessory protein, UreD
Locus tag: blr1454
Name: ureA
Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: blr1455
Name: ureB
Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: blr1456
Name: null
Funciton: Metal dependent phosphohydrolase
Locus tag: blr1457
Name: ureC
Funciton: Urease, alpha subunit (EC 3.5.1.5)
urtA
Urea ABC transporter, substrate-binding component
urtB
Urea ABC transporter, permease component 1
urtC
Urea ABC transporter, permease component 2
urtD
Urea ABC transporter, ATP-binding component 1
urtE
Urea ABC transporter, ATP-binding component 2
ureD
Urease accessory protein, UreD
ureA
Urease, gamma subunit (EC 3.5.1.5)
ureB
Urease, beta subunit (EC 3.5.1.5)
Metal dependent phosphohydrolase
ureC
Urease, alpha subunit (EC 3.5.1.5)

Position: -290
Score: 3.6
Sequence: TGCCTATTTCGTAGTCT
Locus tag: blr4948
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: blr4949
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnB
Nitrogen regulatory protein P-II
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -180
Score: 4.1
Sequence: TGCCCTCATTTTGAGCA
Locus tag: blr0612
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: blr0613
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter

Position: -190
Score: 4.5
Sequence: CGATGAAATTTTGAGCA
Locus tag: blr1036
Name: dppA
Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: blr1037
Name: dppB
Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: blr1038
Name: dppC
Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: blr1039
Name: dppDE
Funciton: Dipeptide ABC transporter, ATP-binding component
dppA
Dipeptide ABC transporter, substrate-binding component
dppB
Dipeptide ABC transporter, permease component 1
dppC
Dipeptide ABC transporter, permease component 2
dppDE
Dipeptide ABC transporter, ATP-binding component

Position: -292
Score: 3.9
Sequence: AGCTCAATCCTTGTGCG
Locus tag: blr2806
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: blr2807
Name: hmp
Funciton: Nitric oxide dioxygenase
Locus tag: blr2808
Name: nasB
Funciton: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Locus tag: blr2809
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
narK
Nitrate/nitrite antiporter
hmp
Nitric oxide dioxygenase
nasB
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD