Regulon of NtrC in Bradyrhizobium japonicum USDA 110

Properties
Regulator type:	Transcription factor
TF locus tag:	blr4488
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Rhizobiales
Statistics of regulated genes:
- Genes	24
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 86 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -202 Score: 4 Sequence: CGTCTAAATTTTGGGCT Locus tag: bll4571 Name: nirA Funciton: Ferredoxin--nitrite reductase (EC 1.7.7.1) Locus tag: bll4570 Name: nasB2 Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
	bll4571	nirA	Ferredoxin--nitrite reductase (EC 1.7.7.1)
	bll4570	nasB2	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Position: -111 Score: 4.4 Sequence: TGCTCAATAAATGAACT Position: -67 Score: 4.9 Sequence: TGCACAAATCTTGAGCA Locus tag: blr1448 Name: urtA Funciton: Urea ABC transporter, substrate-binding component Locus tag: blr1449 Name: urtB Funciton: Urea ABC transporter, permease component 1 Locus tag: blr1450 Name: urtC Funciton: Urea ABC transporter, permease component 2 Locus tag: blr1451 Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1 Locus tag: blr1452 Name: urtE Funciton: Urea ABC transporter, ATP-binding component 2 Locus tag: blr1453 Name: ureD Funciton: Urease accessory protein, UreD Locus tag: blr1454 Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5) Locus tag: blr1455 Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5) Locus tag: blr1456 Name: null Funciton: Metal dependent phosphohydrolase Locus tag: blr1457 Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5)
	blr1448	urtA	Urea ABC transporter, substrate-binding component
	blr1449	urtB	Urea ABC transporter, permease component 1
	blr1450	urtC	Urea ABC transporter, permease component 2
	blr1451	urtD	Urea ABC transporter, ATP-binding component 1
	blr1452	urtE	Urea ABC transporter, ATP-binding component 2
	blr1453	ureD	Urease accessory protein, UreD
	blr1454	ureA	Urease, gamma subunit (EC 3.5.1.5)
	blr1455	ureB	Urease, beta subunit (EC 3.5.1.5)
	blr1456		Metal dependent phosphohydrolase
	blr1457	ureC	Urease, alpha subunit (EC 3.5.1.5)
Position: -290 Score: 3.6 Sequence: TGCCTATTTCGTAGTCT Locus tag: blr4948 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: blr4949 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	blr4948	glnB	Nitrogen regulatory protein P-II
	blr4949	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -180 Score: 4.1 Sequence: TGCCCTCATTTTGAGCA Locus tag: blr0612 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: blr0613 Name: amtB Funciton: Ammonium transporter
	blr0612	glnK	Nitrogen regulatory protein P-II
	blr0613	amtB	Ammonium transporter
Position: -190 Score: 4.5 Sequence: CGATGAAATTTTGAGCA Locus tag: blr1036 Name: dppA Funciton: Dipeptide ABC transporter, substrate-binding component Locus tag: blr1037 Name: dppB Funciton: Dipeptide ABC transporter, permease component 1 Locus tag: blr1038 Name: dppC Funciton: Dipeptide ABC transporter, permease component 2 Locus tag: blr1039 Name: dppDE Funciton: Dipeptide ABC transporter, ATP-binding component
	blr1036	dppA	Dipeptide ABC transporter, substrate-binding component
	blr1037	dppB	Dipeptide ABC transporter, permease component 1
	blr1038	dppC	Dipeptide ABC transporter, permease component 2
	blr1039	dppDE	Dipeptide ABC transporter, ATP-binding component
Position: -292 Score: 3.9 Sequence: AGCTCAATCCTTGTGCG Locus tag: blr2806 Name: narK Funciton: Nitrate/nitrite antiporter Locus tag: blr2807 Name: hmp Funciton: Nitric oxide dioxygenase Locus tag: blr2808 Name: nasB Funciton: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) Locus tag: blr2809 Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
	blr2806	narK	Nitrate/nitrite antiporter
	blr2807	hmp	Nitric oxide dioxygenase
	blr2808	nasB	Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
	blr2809	nasA	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Bradyrhizobium japonicum USDA 110

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --