Regulon of NtrC in Bradyrhizobium japonicum USDA 110
| Regulator type: | Transcription factor |
| TF locus tag: | blr4488 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 24 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -202
Score: 4 Sequence: CGTCTAAATTTTGGGCT
Locus tag: bll4571
Name: nirA Funciton: Ferredoxin--nitrite reductase (EC 1.7.7.1)
Locus tag: bll4570
Name: nasB2 Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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nirA
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Ferredoxin--nitrite reductase (EC 1.7.7.1)
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nasB2
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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Position: -111
Score: 4.4 Sequence: TGCTCAATAAATGAACT
Position: -67
Score: 4.9 Sequence: TGCACAAATCTTGAGCA
Locus tag: blr1448
Name: urtA Funciton: Urea ABC transporter, substrate-binding component
Locus tag: blr1449
Name: urtB Funciton: Urea ABC transporter, permease component 1
Locus tag: blr1450
Name: urtC Funciton: Urea ABC transporter, permease component 2
Locus tag: blr1451
Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: blr1452
Name: urtE Funciton: Urea ABC transporter, ATP-binding component 2
Locus tag: blr1453
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: blr1454
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: blr1455
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: blr1456
Name: null Funciton: Metal dependent phosphohydrolase
Locus tag: blr1457
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5) |
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urtA
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Urea ABC transporter, substrate-binding component
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urtB
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Urea ABC transporter, permease component 1
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urtC
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Urea ABC transporter, permease component 2
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urtD
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Urea ABC transporter, ATP-binding component 1
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urtE
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Urea ABC transporter, ATP-binding component 2
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ureD
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Urease accessory protein, UreD
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ureA
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Urease, gamma subunit (EC 3.5.1.5)
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ureB
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Urease, beta subunit (EC 3.5.1.5)
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Metal dependent phosphohydrolase
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ureC
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Urease, alpha subunit (EC 3.5.1.5)
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Position: -290
Score: 3.6 Sequence: TGCCTATTTCGTAGTCT
Locus tag: blr4948
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: blr4949
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -180
Score: 4.1 Sequence: TGCCCTCATTTTGAGCA
Locus tag: blr0612
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: blr0613
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -190
Score: 4.5 Sequence: CGATGAAATTTTGAGCA
Locus tag: blr1036
Name: dppA Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: blr1037
Name: dppB Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: blr1038
Name: dppC Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: blr1039
Name: dppDE Funciton: Dipeptide ABC transporter, ATP-binding component |
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dppA
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Dipeptide ABC transporter, substrate-binding component
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dppB
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Dipeptide ABC transporter, permease component 1
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dppC
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Dipeptide ABC transporter, permease component 2
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dppDE
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Dipeptide ABC transporter, ATP-binding component
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Position: -292
Score: 3.9 Sequence: AGCTCAATCCTTGTGCG
Locus tag: blr2806
Name: narK Funciton: Nitrate/nitrite antiporter
Locus tag: blr2807
Name: hmp Funciton: Nitric oxide dioxygenase
Locus tag: blr2808
Name: nasB Funciton: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Locus tag: blr2809
Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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narK
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Nitrate/nitrite antiporter
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hmp
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Nitric oxide dioxygenase
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nasB
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Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
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nasA
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |