Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL2257
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Statistics of regulated genes:
- Genes 17
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -227
Score: 4.2
Sequence: AGCCTAAGAAATAGGCA
Locus tag: pRL100344
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: pRL100345
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: pRL100346
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
pRL100344
nrtA
Nitrate ABC transporter, substrate-binding component
pRL100345
nrtB
Nitrate ABC transporter, permease component
pRL100346
nrtC
Nitrate ABC transporter, ATP-binding component
Position: -269
Score: 4.2
Sequence: TGCCTATATTTTCATCT
Locus tag: RL2393
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: RL2392
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
RL2393
glnB
Nitrogen regulatory protein P-II
RL2392
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -25
Score: 3.8
Sequence: TGGCTAAAAATAATGCA
Locus tag: RL2255
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RL2256
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RL2257
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
RL2255
nifR3
Predicted oxidoreductase, FAD binding
RL2256
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
RL2257
ntrC
Nitrogen regulation protein NR(I), Fis family
Position: -299
Score: 4
Sequence: CGCACATTTTCTGTGCA
Position: -222
Score: 3.8
Sequence: TGATTTATAATTTGGCA
Locus tag: pRL90288
Name: uctA
Funciton: Urea carboxylase-related ABC transporter, substrate-binding component
Locus tag: pRL90289
Name: uctB
Funciton: Urea carboxylase-related ABC transporter, permease component
Locus tag: pRL90290
Name: uctC
Funciton: Urea carboxylase-related ABC transporter, ATP-binding component
Locus tag: pRL90291
Name: uahC
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: pRL90292
Name: uahB
Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: pRL90293
Name: uahA
Funciton: Urea carboxylase (EC 6.3.4.6)
Locus tag: pRL90294
Name: atzF
Funciton: Allophanate hydrolase (EC 3.5.1.54)
pRL90288
uctA
Urea carboxylase-related ABC transporter, substrate-binding component
pRL90289
uctB
Urea carboxylase-related ABC transporter, permease component
pRL90290
uctC
Urea carboxylase-related ABC transporter, ATP-binding component
pRL90291
uahC
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
pRL90292
uahB
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
pRL90293
uahA
Urea carboxylase (EC 6.3.4.6)
pRL90294
atzF
Allophanate hydrolase (EC 3.5.1.54)
Position: -201
Score: 3.8
Sequence: TGCGCGTTATTTGTGCG
Locus tag: RL4565
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: RL4564
Name: amtB
Funciton: Ammonium transporter
RL4565
glnK
Nitrogen regulatory protein P-II
RL4564
amtB
Ammonium transporter
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