Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RirA in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_c03450
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Statistics of regulated genes:
- Genes 31
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 129 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -82
Score: 4
Sequence: CTTGACTGCAACTATCCGG
Position: -44
Score: 4.9
Sequence: TATGAGTAATGCAGTCAAG
Locus tag: NGR_c24570
Name: hmuS
Funciton: Hemin transport system, degrading protein
Locus tag: NGR_c24580
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: NGR_c24590
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
NGR_c24570
hmuS
Hemin transport system, degrading protein
NGR_c24580
hmuT
Hemin ABC transporter, periplasmic protein
NGR_c24590
hmuU
Hemin ABC transporter, permease protein
Position: -172
Score: 4.5
Sequence: CTTGACGAAAGCAGTCAGC
Locus tag: NGR_c15400
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: NGR_c15410
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: NGR_c15420
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: NGR_c15430
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: NGR_c15440
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: NGR_c15450
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: NGR_c15460
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
NGR_c15400
sufS2
Cysteine desulfurase (EC 2.8.1.7)
NGR_c15410
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
NGR_c15420
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
NGR_c15430
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
NGR_c15440
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
NGR_c15450
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
NGR_c15460
sufA
Iron binding protein SufA for iron-sulfur cluster assembly
Position: -59
Score: 5.1
Sequence: GTTGACTGGTAAAGTCATG
Locus tag: NGR_b11200
Name: irp6A
Funciton: iron ABC transporter, periplasmic protein
Locus tag: NGR_b11210
Name: irp6A
Funciton: iron ABC transporter, periplasmic protein
Locus tag: NGR_b11220
Name: irp6B
Funciton: iron ABC transporter, permease protein
Locus tag: NGR_b11230
Name: irp6C
Funciton: iron ABC transporter, ATP-binding protein
NGR_b11200
irp6A
iron ABC transporter, periplasmic protein
NGR_b11210
irp6A
iron ABC transporter, periplasmic protein
NGR_b11220
irp6B
iron ABC transporter, permease protein
NGR_b11230
irp6C
iron ABC transporter, ATP-binding protein
Position: -132
Score: 4.6
Sequence: CATGATTATTATACTCCAG
Locus tag: NGR_c13490
Name: exbB
Funciton: Ferric siderophore transport system, proton channel protein ExbB
Locus tag: NGR_c13500
Name: exbD
Funciton: Ferric siderophore transport system, proton channel protein ExbD
NGR_c13490
exbB
Ferric siderophore transport system, proton channel protein ExbB
NGR_c13500
exbD
Ferric siderophore transport system, proton channel protein ExbD
Position: -100
Score: 5.4
Sequence: CATGACTTTAATAGTCATA
Position: -57
Score: 5
Sequence: CATGAGTGATTAAGTCATC
Locus tag: NGR_c21740
Name: fhuA2
Funciton: TonB-dependent siderophore receptor
Locus tag: NGR_c21750
Name: fhuF
Funciton: Ferric reductase (1.6.99.14)
Locus tag: NGR_c21760
Name: PF01497
Funciton: Putative periplasmic substrate-binding transport protein, FepB-like
NGR_c21740
fhuA2
TonB-dependent siderophore receptor
NGR_c21750
fhuF
Ferric reductase (1.6.99.14)
NGR_c21760
PF01497
Putative periplasmic substrate-binding transport protein, FepB-like
Position: -138
Score: 4.5
Sequence: CATGAGTAAAAAAATCAAT
Locus tag: NGR_c23530
Name: PF06904
Funciton: extensin-like protein
NGR_c23530
PF06904
extensin-like protein
Position: -190
Score: 5
Sequence: CATGAATTTAAAATTCATG
Locus tag: NGR_c07330
Name: cycF
Funciton: Cytochrome c-556
Locus tag: NGR_c07340
Name: cycG
Funciton: diheme cytochrome c-553
NGR_c07330
cycF
Cytochrome c-556
NGR_c07340
cycG
diheme cytochrome c-553
Position: -41
Score: 4.1
Sequence: CTTGACGACGAGAGTCAGC
Locus tag: NGR_c09100
Name: PF00501
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
NGR_c09100
PF00501
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -11
Score: 3.9
Sequence: GTTGACGGCAAATGTCCTC
Locus tag: NGR_c31850
Name: bfd
Funciton: Bacterioferritin ferredoxin
Locus tag: NGR_c31840
Name: bfr
Funciton: bacterioferritin (Cytochrome B-1) (Cytochrome B-557)
NGR_c31850
bfd
Bacterioferritin ferredoxin
NGR_c31840
bfr
bacterioferritin (Cytochrome B-1) (Cytochrome B-557)
Position: -1
Score: 4.5
Sequence: ATTGATTTTTTTACTCATG
Locus tag: NGR_c23520
Name: hmuR
Funciton: TonB-dependent iron siderophore receptor protein
NGR_c23520
hmuR
TonB-dependent iron siderophore receptor protein
Position: -149
Score: 4.9
Sequence: TATGATTAAAAAACTCATG
Position: -124
Score: 4.2
Sequence: CTTTACTATGATTATCAAG
Locus tag: NGR_c24540
Name: PF10087
Funciton: hypothetical protein
Locus tag: NGR_c24530
Name: null
Funciton: hypothetical protein
Locus tag: NGR_c24520
Name: PF03992
Funciton: Hypothetical monooxygenase
NGR_c24540
PF10087
hypothetical protein
NGR_c24530
hypothetical protein
NGR_c24520
PF03992
Hypothetical monooxygenase
Position: -118
Score: 4.9
Sequence: CTTGACTGCATTACTCATA
Position: -80
Score: 4
Sequence: CCGGATAGTTGCAGTCAAG
Locus tag: NGR_c24560
Name: null
Funciton: hypothetical protein
Locus tag: NGR_c24550
Name: tonB
Funciton: Ferric siderophore transport system energy transducer
NGR_c24560
hypothetical protein
NGR_c24550
tonB
Ferric siderophore transport system energy transducer
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