Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator RirA in Rhizobiales

Properties
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Sinorhizobium meliloti 1021
SMa1747 fhuA3 -102 4.1 GTTGAGCGAAGCTTTCATG
SMa1749 araX1 -116 4 AATGAGAATACGAGTCAAC
SMc00045 cycF -182 4.6 GATGAGTTCTATATTCATA
SMc04203 fecI -170 4.8 CATGATTATCTCAATCAAC
SMc01657 fhuA2 -93 5.4 CATGACTTAAAAAGTCATG
SMc01657 fhuA2 -50 3.9 CATGAGTGATTAGCTCACC
SMc02085 exbB -181 4.3 CTTGATTATTGTACTCCAC
SMc02726 shmR -141 4.3 ATTGACAATCACACTCATG
SMc02726 shmR -54 3.9 CTTGAGTTCGCCGCTCAAC
SMc01611 fhuA1 -61 4.1 GTTGACAGTACCGGTCACG
SMc01514 null -115 4.9 CTTGACTTCATTACTCATA
SMc04205 hmuR -119 4.3 TATGACATCCGTTTTCAAG
SMc01747 hmuP -133 4.9 TATGAGTAATGAAGTCAAG
SMb21432 irp6A -59 4.7 GTTGACCGGTAAAGTCATG
SMc03787 bfd -68 3.9 GTTGACGGCAAATGTCCTC
SMc00785 rirA -171 4 CTTAACTTAGTCAATCATA
SMc01611 fhuA1 -85 4.1 GTTGATCTAGACACTCATC
SMc00592 PF00501 -53 4.4 CTTGACGATCAAAGTCAGC
SMa2412 rhrA -108 5 CAAGACTATTTAAGTCATG
SMa2337 rhtX -59 4.6 GATGACGGCAACACTCATG
SMa2410 rhbF -10 3.5 GGAGATTTCTATGCTCATG
SMa1746 fepB -209 4.1 CATGAAAGCTTCGCTCAAC
SMc02727 PF06904 -88 3.9 GTTGAGCGGCGAACTCAAG
SMc02727 PF06904 -1 4.3 CATGAGTGTGATTGTCAAT
SMc00784 fbpA -47 4 TATGATTGACTAAGTTAAG
SMc00529 sufS2 -165 4.8 CTTGACTAAACCAGTCAGC
SMa2414 rhtA -79 5 CATGACTTAAATAGTCTTG
SMc02889 rhtX2 -64 4.9 CCTGAATGCAATAGTCAAG
Rhizobium sp. NGR234
NGR_c21740 fhuA2 -100 5.4 CATGACTTTAATAGTCATA
NGR_c21740 fhuA2 -57 5 CATGAGTGATTAAGTCATC
NGR_c13490 exbB -132 4.6 CATGATTATTATACTCCAG
NGR_c24540 PF10087 -124 4.2 CTTTACTATGATTATCAAG
NGR_c24540 PF10087 -149 4.9 TATGATTAAAAAACTCATG
NGR_c24560 null -118 4.9 CTTGACTGCATTACTCATA
NGR_c24560 null -80 4 CCGGATAGTTGCAGTCAAG
NGR_c23520 hmuR -1 4.5 ATTGATTTTTTTACTCATG
NGR_c24570 hmuS -44 4.9 TATGAGTAATGCAGTCAAG
NGR_c24570 hmuS -82 4 CTTGACTGCAACTATCCGG
NGR_b11200 irp6A -59 5.1 GTTGACTGGTAAAGTCATG
NGR_c31850 bfd -11 3.9 GTTGACGGCAAATGTCCTC
NGR_c09100 PF00501 -41 4.1 CTTGACGACGAGAGTCAGC
NGR_c23530 PF06904 -138 4.5 CATGAGTAAAAAAATCAAT
NGR_c15400 sufS2 -172 4.5 CTTGACGAAAGCAGTCAGC
NGR_c07330 cycF -190 5 CATGAATTTAAAATTCATG
Rhizobium leguminosarum bv. viciae 3841
pRL100325 fhuA3 -95 4.1 GTTGACTCCAATTCTCCTG
RL3165 PF04773 -55 4.3 CTTGACTTTTCTTTTCTAC
pRL120319 fecI -133 4.2 CTTGACTCCTGTTATCACC
pRL120322 fhuA2 -84 5.2 GATGACTAAAATAATCATC
RL3522 shmR -180 4.8 CATGATAGATATATTCAAC
RL3522 shmR -144 4.7 GTTGACAATGCTACTCATG
pRL100328 fhuC -56 4.2 GTTGATTGCCGCTCTCATC
RL3693 PF10087 -82 4.2 CTTTACTCTAAAAATCAAG
RL3693 PF10087 -107 4.6 TATGATAAAAACAATCAAC
RL3695 null -77 4.2 GGAGACAAATACAGTCAAG
RL3695 null -115 4.8 CTTGACTTTCTTACTCATA
RL3696 hmuP -78 4.8 TATGAGTAAGAAAGTCAAG
RL3696 hmuP -116 4.2 CTTGACTGTATTTGTCTCC
RL2713 irp6A -65 4.7 CTTGATTCATTAAGTCATA
RL0777 rirA -85 3.8 GCTGAATGCGAATTTCATA
pRL120713 eitA -82 4 GTTGATTTGTTTGGTCTTG
pRL120320 vbsC -49 4.2 GGTGATAACAGGAGTCAAG
RL4584 fbpA -129 4.8 TATGAAATATTTAGTCAAG
RL4584 fbpA -79 4.3 CTTGAAATCGGCAGTCAGG
RL3523 PF06904 -84 4.7 CATGAGTAGCATTGTCAAC
RL3523 PF06904 -48 4.8 GTTGAATATATCTATCATG
RL2583 sufS2 -166 4.7 CTTGACTAGTGTTGTCAGC
pRL120316 vbsA -137 4.1 GATGAGAATTTTTTTCTTC
pRL120315 vbsS -316 4.1 GAAGAAAAAAATTCTCATC
RL2701 fumC -119 4 CATGACTTCCGATTTCAAT
Rhizobium etli CFN 42
RHE_PF00462 fecI -134 4.2 CTTGACTCCTGTTATCACC
RHE_PF00469 fhuA2 -84 4.3 GCTGACAAAAATAATCACC
RHE_CH03076 shmR -179 4.1 CTTGATGGATTTGTTCAAG
RHE_CH03076 shmR -143 5.1 GTTGACAACAGAAGTCATG
RHE_PF00463 vbsC -49 4.2 GGTGATAACAGGAGTCAAG
RHE_CH03266 null -118 4.8 CTTGACTTTCTTACTCATA
RHE_CH03264 PF10087 -107 4 TATGATCAAAACAGTCTAC
RHE_CH03264 PF10087 -82 4.2 CTTTACTCTAAAAATCAAG
RHE_CH03267 hmuP -78 4.8 TATGAGTAAGAAAGTCAAG
RHE_CH00735 rirA -87 3.8 GCTGAATGCGAATTTCATA
RHE_PF00269 eitA -35 4.1 GTTGATAAATTTGGTCTTG
RHE_CH02695 PF04773 -55 4.4 CTTGACTTTTTCACTCTAC
RHE_PE00160 PF00501 -11 5.2 GTTGACTGCTATTGTCAAG
RHE_CH02254 sufS2 -238 4.7 CTTGACTAACGTTGTCAGC
RHE_CH04056 fbpA -68 4.8 CTTGAAATAGGTAGTCAAG
RHE_CH04056 fbpA -118 4.1 TTTGAAATATCAGGTCAAG
RHE_PF00459 vbsA -126 4.1 GATGAGAATTTTTTTCTTC
RHE_PF00457 vbsS -324 4.1 GAAGAAAAAAATTCTCATC
RHE_CH02383 fumC -119 4.1 CATGACTGTGATCATCAAT
Agrobacterium tumefaciens str. C58 (Cereon)
Atu2771 bfr -322 4.5 CtTGACatTTActGTCcTG
Atu2287 shmR -137 4.6 GTTGACAGTGATCGTCATG
Atu3387 fecI -131 5.2 CTTGATAATAATTGTCATG
Atu2287 shmR -164 4.8 CATGATTCAAAAAGTCATA
Atu0409 fhuA1 -82 4.1 CCTGATGTAAACACTCATC
Atu2383 PF10087 -93 4 CTTTACTCCAAAACTCATC
Atu3385 hmuR -56 4.5 GTTGAGTAATCCGGTCAAG
Atu2383 PF10087 -118 3.7 CATGAGGAAAATCATCACC
Atu3391 irp6A -62 4.8 CTTGACTAGTACAGTCAGA
Atu0201 rirA -146 4.7 CTTGACTTGTTTGTTCATG
Atu2288 PF06904 -191 3.9 GAAGACATGACTGGTCAAG
Atu0202 fbpA -31 4.7 CATGAACAAACAAGTCAAG
Atu0407 fbpA -66 4.3 CTTGATTTGCGCCGTCATG
Atu1825 sufS2 -157 4.3 CTTGACGAACTGTGTCATC
Atu0881 cycF -149 3.9 CTAGACTTCTGTTTTCACG
Mesorhizobium sp. BNC1
Meso_0338 fhuA2 -107 4.9 GTTGACATTGATAATCATG
Meso_1440 hmuR -144 5 CTTGACATCAATAATCAAC
Meso_1441 hmuP -91 5 GTTGATTATTGATGTCAAG
Meso_1441 hmuP -129 3.8 GTTGAGTAAATCTATCCGG
Meso_4047 bfd -232 4.8 CATGACCTTGAAAGTCAAG
Meso_0170 fbpA -155 4.3 CTTGACTACTATAGTTTAG
Mesorhizobium loti MAFF303099
mlr7638 cycF -28 3.9 AATGAGAAAGCTTGTCATC
mll4168 exbB -84 5.1 GTTGACTGTTGCAGTCATC
mll4168 exbB -59 5 GTTGACTTGTATACTCATG
mlr1155 hmuR -83 5.2 CTTGACTTGAATAATCATG
msl1154 hmuP -121 3.8 GTTGACTCGTTTACTCCGG
msl1154 hmuP -83 5.2 CATGATTATTCAAGTCAAG
mlr1147 rirA -172 4.6 GTTGACGAGAATATTCATC
mlr3495 fbpA -67 4.9 GTTGACTATTCGTGTCATG
Brucella melitensis 16M
BMEI0542 BMEI0542 -133 5.1 CATGATTAACATAATCATG
BMEI0365 exbB -164 4.5 CATGACTTGAAGTATCATA
BMEI1042 sufB -161 4.1 CTTGAATTTTATTGGCAAA
BMEII0707 rirA -183 3.6 GGTGAGAAAAGGTTTCATA
BMEII0584 fbpA -52 4.2 CCTGATCCATATACTCATG
BMEII0705 bfd -345 4.1 CATGgaTATTtaAcTCATa
BMEII1051 fumC -124 4.5 CTTGACATTTATATTCACA
BMEII0105 frpB -261 4.9 TATGAATGTATTAGTCATC
Bartonella quintana str. Toulouse
BQ04160 shmR -158 5.1 CTTGACTGCTTTTATCATG
BQ04170 tonB -100 5.1 CATGATAAAAGCAGTCAAG
BQ05940 sufS2 -75 4.5 TTTGAGTGCATTTTTCAAG
BQ02420 hbpA -260 4.4 CAGGACTCATATTATCATG
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