Profile of regulator RirA in Rhizobiales
Properties
| Regulator family: |
Rrf2 |
| Regulation mode: |
repressor |
| Biological process: |
Iron homeostasis |
| Effector: |
Iron ion, (Fe2+) |
| Regulog: |
RirA - Rhizobiales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Sinorhizobium meliloti 1021
|
|
SMa1747 |
fhuA3 |
-102 |
4.1 |
GTTGAGCGAAGCTTTCATG |
|
SMa1749 |
araX1 |
-116 |
4 |
AATGAGAATACGAGTCAAC |
|
SMc00045 |
cycF |
-182 |
4.6 |
GATGAGTTCTATATTCATA |
|
SMc04203 |
fecI |
-170 |
4.8 |
CATGATTATCTCAATCAAC |
|
SMc01657 |
fhuA2 |
-93 |
5.4 |
CATGACTTAAAAAGTCATG |
|
SMc01657 |
fhuA2 |
-50 |
3.9 |
CATGAGTGATTAGCTCACC |
|
SMc02085 |
exbB |
-181 |
4.3 |
CTTGATTATTGTACTCCAC |
|
SMc02726 |
shmR |
-141 |
4.3 |
ATTGACAATCACACTCATG |
|
SMc02726 |
shmR |
-54 |
3.9 |
CTTGAGTTCGCCGCTCAAC |
|
SMc01611 |
fhuA1 |
-61 |
4.1 |
GTTGACAGTACCGGTCACG |
|
SMc01514 |
null |
-115 |
4.9 |
CTTGACTTCATTACTCATA |
|
SMc04205 |
hmuR |
-119 |
4.3 |
TATGACATCCGTTTTCAAG |
|
SMc01747 |
hmuP |
-133 |
4.9 |
TATGAGTAATGAAGTCAAG |
|
SMb21432 |
irp6A |
-59 |
4.7 |
GTTGACCGGTAAAGTCATG |
|
SMc03787 |
bfd |
-68 |
3.9 |
GTTGACGGCAAATGTCCTC |
|
SMc00785 |
rirA |
-171 |
4 |
CTTAACTTAGTCAATCATA |
|
SMc01611 |
fhuA1 |
-85 |
4.1 |
GTTGATCTAGACACTCATC |
|
SMc00592 |
PF00501 |
-53 |
4.4 |
CTTGACGATCAAAGTCAGC |
|
SMa2412 |
rhrA |
-108 |
5 |
CAAGACTATTTAAGTCATG |
|
SMa2337 |
rhtX |
-59 |
4.6 |
GATGACGGCAACACTCATG |
|
SMa2410 |
rhbF |
-10 |
3.5 |
GGAGATTTCTATGCTCATG |
|
SMa1746 |
fepB |
-209 |
4.1 |
CATGAAAGCTTCGCTCAAC |
|
SMc02727 |
PF06904 |
-88 |
3.9 |
GTTGAGCGGCGAACTCAAG |
|
SMc02727 |
PF06904 |
-1 |
4.3 |
CATGAGTGTGATTGTCAAT |
|
SMc00784 |
fbpA |
-47 |
4 |
TATGATTGACTAAGTTAAG |
|
SMc00529 |
sufS2 |
-165 |
4.8 |
CTTGACTAAACCAGTCAGC |
|
SMa2414 |
rhtA |
-79 |
5 |
CATGACTTAAATAGTCTTG |
|
SMc02889 |
rhtX2 |
-64 |
4.9 |
CCTGAATGCAATAGTCAAG |
|
Rhizobium sp. NGR234
|
|
NGR_c21740 |
fhuA2 |
-100 |
5.4 |
CATGACTTTAATAGTCATA |
|
NGR_c21740 |
fhuA2 |
-57 |
5 |
CATGAGTGATTAAGTCATC |
|
NGR_c13490 |
exbB |
-132 |
4.6 |
CATGATTATTATACTCCAG |
|
NGR_c24540 |
PF10087 |
-124 |
4.2 |
CTTTACTATGATTATCAAG |
|
NGR_c24540 |
PF10087 |
-149 |
4.9 |
TATGATTAAAAAACTCATG |
|
NGR_c24560 |
null |
-118 |
4.9 |
CTTGACTGCATTACTCATA |
|
NGR_c24560 |
null |
-80 |
4 |
CCGGATAGTTGCAGTCAAG |
|
NGR_c23520 |
hmuR |
-1 |
4.5 |
ATTGATTTTTTTACTCATG |
|
NGR_c24570 |
hmuS |
-44 |
4.9 |
TATGAGTAATGCAGTCAAG |
|
NGR_c24570 |
hmuS |
-82 |
4 |
CTTGACTGCAACTATCCGG |
|
NGR_b11200 |
irp6A |
-59 |
5.1 |
GTTGACTGGTAAAGTCATG |
|
NGR_c31850 |
bfd |
-11 |
3.9 |
GTTGACGGCAAATGTCCTC |
|
NGR_c09100 |
PF00501 |
-41 |
4.1 |
CTTGACGACGAGAGTCAGC |
|
NGR_c23530 |
PF06904 |
-138 |
4.5 |
CATGAGTAAAAAAATCAAT |
|
NGR_c15400 |
sufS2 |
-172 |
4.5 |
CTTGACGAAAGCAGTCAGC |
|
NGR_c07330 |
cycF |
-190 |
5 |
CATGAATTTAAAATTCATG |
|
Rhizobium leguminosarum bv. viciae 3841
|
|
pRL100325 |
fhuA3 |
-95 |
4.1 |
GTTGACTCCAATTCTCCTG |
|
RL3165 |
PF04773 |
-55 |
4.3 |
CTTGACTTTTCTTTTCTAC |
|
pRL120319 |
fecI |
-133 |
4.2 |
CTTGACTCCTGTTATCACC |
|
pRL120322 |
fhuA2 |
-84 |
5.2 |
GATGACTAAAATAATCATC |
|
RL3522 |
shmR |
-180 |
4.8 |
CATGATAGATATATTCAAC |
|
RL3522 |
shmR |
-144 |
4.7 |
GTTGACAATGCTACTCATG |
|
pRL100328 |
fhuC |
-56 |
4.2 |
GTTGATTGCCGCTCTCATC |
|
RL3693 |
PF10087 |
-82 |
4.2 |
CTTTACTCTAAAAATCAAG |
|
RL3693 |
PF10087 |
-107 |
4.6 |
TATGATAAAAACAATCAAC |
|
RL3695 |
null |
-77 |
4.2 |
GGAGACAAATACAGTCAAG |
|
RL3695 |
null |
-115 |
4.8 |
CTTGACTTTCTTACTCATA |
|
RL3696 |
hmuP |
-78 |
4.8 |
TATGAGTAAGAAAGTCAAG |
|
RL3696 |
hmuP |
-116 |
4.2 |
CTTGACTGTATTTGTCTCC |
|
RL2713 |
irp6A |
-65 |
4.7 |
CTTGATTCATTAAGTCATA |
|
RL0777 |
rirA |
-85 |
3.8 |
GCTGAATGCGAATTTCATA |
|
pRL120713 |
eitA |
-82 |
4 |
GTTGATTTGTTTGGTCTTG |
|
pRL120320 |
vbsC |
-49 |
4.2 |
GGTGATAACAGGAGTCAAG |
|
RL4584 |
fbpA |
-129 |
4.8 |
TATGAAATATTTAGTCAAG |
|
RL4584 |
fbpA |
-79 |
4.3 |
CTTGAAATCGGCAGTCAGG |
|
RL3523 |
PF06904 |
-84 |
4.7 |
CATGAGTAGCATTGTCAAC |
|
RL3523 |
PF06904 |
-48 |
4.8 |
GTTGAATATATCTATCATG |
|
RL2583 |
sufS2 |
-166 |
4.7 |
CTTGACTAGTGTTGTCAGC |
|
pRL120316 |
vbsA |
-137 |
4.1 |
GATGAGAATTTTTTTCTTC |
|
pRL120315 |
vbsS |
-316 |
4.1 |
GAAGAAAAAAATTCTCATC |
|
RL2701 |
fumC |
-119 |
4 |
CATGACTTCCGATTTCAAT |
|
Rhizobium etli CFN 42
|
|
RHE_PF00462 |
fecI |
-134 |
4.2 |
CTTGACTCCTGTTATCACC |
|
RHE_PF00469 |
fhuA2 |
-84 |
4.3 |
GCTGACAAAAATAATCACC |
|
RHE_CH03076 |
shmR |
-179 |
4.1 |
CTTGATGGATTTGTTCAAG |
|
RHE_CH03076 |
shmR |
-143 |
5.1 |
GTTGACAACAGAAGTCATG |
|
RHE_PF00463 |
vbsC |
-49 |
4.2 |
GGTGATAACAGGAGTCAAG |
|
RHE_CH03266 |
null |
-118 |
4.8 |
CTTGACTTTCTTACTCATA |
|
RHE_CH03264 |
PF10087 |
-107 |
4 |
TATGATCAAAACAGTCTAC |
|
RHE_CH03264 |
PF10087 |
-82 |
4.2 |
CTTTACTCTAAAAATCAAG |
|
RHE_CH03267 |
hmuP |
-78 |
4.8 |
TATGAGTAAGAAAGTCAAG |
|
RHE_CH00735 |
rirA |
-87 |
3.8 |
GCTGAATGCGAATTTCATA |
|
RHE_PF00269 |
eitA |
-35 |
4.1 |
GTTGATAAATTTGGTCTTG |
|
RHE_CH02695 |
PF04773 |
-55 |
4.4 |
CTTGACTTTTTCACTCTAC |
|
RHE_PE00160 |
PF00501 |
-11 |
5.2 |
GTTGACTGCTATTGTCAAG |
|
RHE_CH02254 |
sufS2 |
-238 |
4.7 |
CTTGACTAACGTTGTCAGC |
|
RHE_CH04056 |
fbpA |
-68 |
4.8 |
CTTGAAATAGGTAGTCAAG |
|
RHE_CH04056 |
fbpA |
-118 |
4.1 |
TTTGAAATATCAGGTCAAG |
|
RHE_PF00459 |
vbsA |
-126 |
4.1 |
GATGAGAATTTTTTTCTTC |
|
RHE_PF00457 |
vbsS |
-324 |
4.1 |
GAAGAAAAAAATTCTCATC |
|
RHE_CH02383 |
fumC |
-119 |
4.1 |
CATGACTGTGATCATCAAT |
|
Agrobacterium tumefaciens str. C58 (Cereon)
|
|
Atu2771 |
bfr |
-322 |
4.5 |
CtTGACatTTActGTCcTG |
|
Atu2287 |
shmR |
-137 |
4.6 |
GTTGACAGTGATCGTCATG |
|
Atu3387 |
fecI |
-131 |
5.2 |
CTTGATAATAATTGTCATG |
|
Atu2287 |
shmR |
-164 |
4.8 |
CATGATTCAAAAAGTCATA |
|
Atu0409 |
fhuA1 |
-82 |
4.1 |
CCTGATGTAAACACTCATC |
|
Atu2383 |
PF10087 |
-93 |
4 |
CTTTACTCCAAAACTCATC |
|
Atu3385 |
hmuR |
-56 |
4.5 |
GTTGAGTAATCCGGTCAAG |
|
Atu2383 |
PF10087 |
-118 |
3.7 |
CATGAGGAAAATCATCACC |
|
Atu3391 |
irp6A |
-62 |
4.8 |
CTTGACTAGTACAGTCAGA |
|
Atu0201 |
rirA |
-146 |
4.7 |
CTTGACTTGTTTGTTCATG |
|
Atu2288 |
PF06904 |
-191 |
3.9 |
GAAGACATGACTGGTCAAG |
|
Atu0202 |
fbpA |
-31 |
4.7 |
CATGAACAAACAAGTCAAG |
|
Atu0407 |
fbpA |
-66 |
4.3 |
CTTGATTTGCGCCGTCATG |
|
Atu1825 |
sufS2 |
-157 |
4.3 |
CTTGACGAACTGTGTCATC |
|
Atu0881 |
cycF |
-149 |
3.9 |
CTAGACTTCTGTTTTCACG |
|
Mesorhizobium sp. BNC1
|
|
Meso_0338 |
fhuA2 |
-107 |
4.9 |
GTTGACATTGATAATCATG |
|
Meso_1440 |
hmuR |
-144 |
5 |
CTTGACATCAATAATCAAC |
|
Meso_1441 |
hmuP |
-91 |
5 |
GTTGATTATTGATGTCAAG |
|
Meso_1441 |
hmuP |
-129 |
3.8 |
GTTGAGTAAATCTATCCGG |
|
Meso_4047 |
bfd |
-232 |
4.8 |
CATGACCTTGAAAGTCAAG |
|
Meso_0170 |
fbpA |
-155 |
4.3 |
CTTGACTACTATAGTTTAG |
|
Mesorhizobium loti MAFF303099
|
|
mlr7638 |
cycF |
-28 |
3.9 |
AATGAGAAAGCTTGTCATC |
|
mll4168 |
exbB |
-84 |
5.1 |
GTTGACTGTTGCAGTCATC |
|
mll4168 |
exbB |
-59 |
5 |
GTTGACTTGTATACTCATG |
|
mlr1155 |
hmuR |
-83 |
5.2 |
CTTGACTTGAATAATCATG |
|
msl1154 |
hmuP |
-121 |
3.8 |
GTTGACTCGTTTACTCCGG |
|
msl1154 |
hmuP |
-83 |
5.2 |
CATGATTATTCAAGTCAAG |
|
mlr1147 |
rirA |
-172 |
4.6 |
GTTGACGAGAATATTCATC |
|
mlr3495 |
fbpA |
-67 |
4.9 |
GTTGACTATTCGTGTCATG |
|
Brucella melitensis 16M
|
|
BMEI0542 |
BMEI0542 |
-133 |
5.1 |
CATGATTAACATAATCATG |
|
BMEI0365 |
exbB |
-164 |
4.5 |
CATGACTTGAAGTATCATA |
|
BMEI1042 |
sufB |
-161 |
4.1 |
CTTGAATTTTATTGGCAAA |
|
BMEII0707 |
rirA |
-183 |
3.6 |
GGTGAGAAAAGGTTTCATA |
|
BMEII0584 |
fbpA |
-52 |
4.2 |
CCTGATCCATATACTCATG |
|
BMEII0705 |
bfd |
-345 |
4.1 |
CATGgaTATTtaAcTCATa |
|
BMEII1051 |
fumC |
-124 |
4.5 |
CTTGACATTTATATTCACA |
|
BMEII0105 |
frpB |
-261 |
4.9 |
TATGAATGTATTAGTCATC |
|
Bartonella quintana str. Toulouse
|
|
BQ04160 |
shmR |
-158 |
5.1 |
CTTGACTGCTTTTATCATG |
|
BQ04170 |
tonB |
-100 |
5.1 |
CATGATAAAAGCAGTCAAG |
|
BQ05940 |
sufS2 |
-75 |
4.5 |
TTTGAGTGCATTTTTCAAG |
|
BQ02420 |
hbpA |
-260 |
4.4 |
CAGGACTCATATTATCATG |
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Regulatory Sites
|
[ FASTA format ]
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