Regulog RirA - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - Rrf2
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 58 | 23 |
| Rhizobium sp. NGR234 | 31 | 12 |
| Rhizobium leguminosarum bv. viciae 3841 | 45 | 19 |
| Rhizobium etli CFN 42 | 41 | 16 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 26 | 13 |
| Mesorhizobium sp. BNC1 | 19 | 5 |
| Mesorhizobium loti MAFF303099 | 16 | 6 |
| Brucella melitensis 16M | 16 | 8 |
| Bartonella quintana str. Toulouse | 7 | 4 |
| Rhodopseudomonas palustris CGA009 | ||
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| sufS2 |
*
Sinorhizobium meliloti 1021 Site: position = -165 score = 4.8489 sequence = CTTGACTAAACCAGTCAGC Gene: SMc00529: Cysteine desulfurase (EC 2.8.1.7) |
*
Rhizobium sp. NGR234 Site: position = -172 score = 4.49962 sequence = CTTGACGAAAGCAGTCAGC Gene: NGR_c15400: Cysteine desulfurase (EC 2.8.1.7) |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -166 score = 4.74628 sequence = CTTGACTAGTGTTGTCAGC Gene: RL2583: Cysteine desulfurase (EC 2.8.1.7) |
*
Rhizobium etli CFN 42 Site: position = -238 score = 4.67548 sequence = CTTGACTAACGTTGTCAGC Gene: RHE_CH02254: Cysteine desulfurase (EC 2.8.1.7) |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -157 score = 4.33882 sequence = CTTGACGAACTGTGTCATC Gene: Atu1825: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Meso_1782: Cysteine desulfurase (EC 2.8.1.7) |
Gene: mlr0015: Cysteine desulfurase (EC 2.8.1.7) |
Gene: BMEI1043: Cysteine desulfurase (EC 2.8.1.7) |
*
Bartonella quintana str. Toulouse Site: position = -75 score = 4.48153 sequence = TTTGAGTGCATTTTTCAAG Gene: BQ05940: Cysteine desulfurase (EC 2.8.1.7) |
Gene: RPA2463: Cysteine desulfurase (EC 2.8.1.7) |
Gene: blr4338: Cysteine desulfurase (EC 2.8.1.7) |
Gene: BBta_3965: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Nwi_1665: Cysteine desulfurase (EC 2.8.1.7) |
Gene: AZC_3616: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Xaut_4470: Cysteine desulfurase (EC 2.8.1.7) |
Cysteine desulfurase (EC 2.8.1.7) |
| sufB |
Gene: SMc00530: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: NGR_c15410: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: RL2582: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: RHE_CH02253: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: Atu1824: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: Meso_1781: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: mlr0016: ABC transporter involved in Fe-S cluster assembly, permease protein |
*
Brucella melitensis 16M Site: position = -161 score = 4.05006 sequence = CTTGAATTTTATTGGCAAA Gene: BMEI1042: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: BQ05950: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: RPA2464: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: blr4339: ABC transporter involved in Fe-S cluster assembly, permease protein |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_5931: ABC transporter involved in Fe-S cluster assembly, permease protein Gene: BBta_3966: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: Nwi_1664: ABC transporter involved in Fe-S cluster assembly, permease protein |
2
Azorhizobium caulinodans ORS 571 Gene: AZC_1044: ABC transporter involved in Fe-S cluster assembly, permease protein Gene: AZC_3615: ABC transporter involved in Fe-S cluster assembly, permease protein |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0084: ABC transporter involved in Fe-S cluster assembly, permease protein Gene: Xaut_4469: ABC transporter involved in Fe-S cluster assembly, permease protein |
ABC transporter involved in Fe-S cluster assembly, permease protein |
| PF01541 |
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Gene: RL2581: hypothetical protein |
Gene: RHE_CH02252: Excinuclease ABC, C subunit-like |
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Excinuclease ABC, C subunit-like |
| sufC |
Gene: SMc00531: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: NGR_c15420: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: RL2580: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: RHE_CH02251: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: Atu1823: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: Meso_1780: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: mlr0019: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: BMEI1041: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: BQ05960: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: RPA2465: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
Gene: blr4340: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_5930: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein Gene: BBta_3967: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_1663: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein Gene: Nwi_0611: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
2
Azorhizobium caulinodans ORS 571 Gene: AZC_1045: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein Gene: AZC_3614: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0085: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein Gene: Xaut_4468: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein |
| sufD |
Gene: SMc00532: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: NGR_c15430: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: RL2579: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: RHE_CH02250: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: Atu1822: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: Meso_1779: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: mlr0020: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: BMEI1040: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: BQ05970: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: RPA2466: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: blr4341: ABC transporter involved in Fe-S cluster assembly, permease protein |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_3968: ABC transporter involved in Fe-S cluster assembly, permease protein Gene: BBta_5929: ABC transporter involved in Fe-S cluster assembly, permease protein |
Gene: Nwi_1662: ABC transporter involved in Fe-S cluster assembly, permease protein |
2
Azorhizobium caulinodans ORS 571 Gene: AZC_1046: ABC transporter involved in Fe-S cluster assembly, permease protein Gene: AZC_3613: ABC transporter involved in Fe-S cluster assembly, permease protein |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0086: ABC transporter involved in Fe-S cluster assembly, permease protein Gene: Xaut_4467: ABC transporter involved in Fe-S cluster assembly, permease protein |
ABC transporter involved in Fe-S cluster assembly, permease protein |
| sufS |
Gene: SMc00533: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: NGR_c15440: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: RL2578: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: RHE_CH02249: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Atu1821: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Meso_1778: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: mlr0021: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: BMEI1039: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: BQ05980: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: RPA2467: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: blr4342: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_3969: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Gene: BBta_5928: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Nwi_1661: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
2
Azorhizobium caulinodans ORS 571 Gene: AZC_3612: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Gene: AZC_1047: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0087: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Gene: Xaut_4466: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
| PF01883 |
Gene: SMc00302: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: NGR_c15450: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: RL2577: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: RHE_CH02248: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Atu1820: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Meso_1777: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: mlr0023: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: BMEI1038: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: BQ05990: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: RPA2468: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: blr4343: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_5887: PaaD-like protein (DUF59) involved in Fe-S cluster assembly Gene: BBta_3970: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Nwi_1660: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: AZC_3611: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Xaut_4465: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
| sufA |
Gene: SMc00301: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: NGR_c15460: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: RL2576: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: RHE_CH02247: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Atu1819: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Meso_1776: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: mlr0024: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: BMEI1034: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: BQ05250: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: RPA2470: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: blr4344: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: BBta_3971: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Nwi_1659: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: AZC_3609: Iron binding protein SufA for iron-sulfur cluster assembly |
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Iron binding protein SufA for iron-sulfur cluster assembly |
| CRON 2. | ||||||||||||||||
| hmuP |
*
Sinorhizobium meliloti 1021 Site: position = -133 score = 4.90856 sequence = TATGAGTAATGAAGTCAAG Gene: SMc01747: Hemin ABC transporter, hemin uptake protein |
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*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -78 score = 4.79375 sequence = TATGAGTAAGAAAGTCAAG Site: position = -116 score = 4.20598 sequence = CTTGACTGTATTTGTCTCC Gene: RL3696: Hemin ABC transporter, hemin uptake protein |
*
Rhizobium etli CFN 42 Site: position = -78 score = 4.79375 sequence = TATGAGTAAGAAAGTCAAG Gene: RHE_CH03267: Hemin ABC transporter, hemin uptake protein |
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*
Mesorhizobium sp. BNC1 Site: position = -91 score = 4.95872 sequence = GTTGATTATTGATGTCAAG Site: position = -129 score = 3.75013 sequence = GTTGAGTAAATCTATCCGG Gene: Meso_1441: Hemin ABC transporter, hemin uptake protein |
*
Mesorhizobium loti MAFF303099 Site: position = -121 score = 3.75202 sequence = GTTGACTCGTTTACTCCGG Site: position = -83 score = 5.17004 sequence = CATGATTATTCAAGTCAAG Gene: msl1154: Hemin ABC transporter, hemin uptake protein |
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Gene: RPA2121: Hemin ABC transporter, hemin uptake protein |
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Gene: AZC_1578: Hemin ABC transporter, hemin uptake protein |
Gene: Xaut_4550: Hemin ABC transporter, hemin uptake protein |
Hemin ABC transporter, hemin uptake protein |
| hmuS |
Gene: SMc01513: Hemin transport system, degrading protein |
*
Rhizobium sp. NGR234 Site: position = -44 score = 4.90856 sequence = TATGAGTAATGCAGTCAAG Site: position = -82 score = 4.00447 sequence = CTTGACTGCAACTATCCGG Gene: NGR_c24570: Hemin transport system, degrading protein |
Gene: RL3697: Hemin transport system, degrading protein |
Gene: RHE_CH03268: Hemin transport system, degrading protein |
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Gene: mll1152: Hemin transport system, degrading protein |
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Gene: BQ04150: Hemin transport system, degrading protein |
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Hemin transport system, degrading protein |
| hmuT |
Gene: SMc01512: Hemin ABC transporter, periplasmic protein |
Gene: NGR_c24580: Hemin ABC transporter, periplasmic protein |
Gene: RL3698: Hemin ABC transporter, periplasmic protein |
Gene: RHE_CH03269: Hemin ABC transporter, periplasmic protein |
Gene: Atu2460: Hemin ABC transporter, periplasmic protein |
Gene: Meso_1442: Hemin ABC transporter, periplasmic protein |
Gene: mll1151: Hemin ABC transporter, periplasmic protein |
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Gene: BQ04140: Hemin ABC transporter, periplasmic protein |
Gene: RPA2120: Hemin ABC transporter, periplasmic protein |
Gene: blr7077: Hemin ABC transporter, periplasmic protein |
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Gene: Nwi_2324: Hemin ABC transporter, periplasmic protein |
Gene: AZC_4385: Hemin ABC transporter, periplasmic protein |
Gene: Xaut_4192: Hemin ABC transporter, periplasmic protein |
Hemin ABC transporter, periplasmic protein |
| hmuU |
Gene: SMc01511: Hemin ABC transporter, permease protein |
Gene: NGR_c24590: Hemin ABC transporter, permease protein |
Gene: RL3699: Hemin ABC transporter, permease protein |
Gene: RHE_CH03270: Hemin ABC transporter, permease protein |
Gene: Atu2459: Hemin ABC transporter, permease protein |
Gene: Meso_1443: Hemin ABC transporter, permease protein |
Gene: mll1150: Hemin ABC transporter, permease protein |
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Gene: BQ04130: Hemin ABC transporter, permease protein |
Gene: RPA2119: Hemin ABC transporter, permease protein |
Gene: blr7078: Hemin ABC transporter, permease protein |
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Gene: Nwi_2323: Hemin ABC transporter, permease protein |
Gene: AZC_4386: Hemin ABC transporter, permease protein |
Gene: Xaut_4193: Hemin ABC transporter, permease protein |
Hemin ABC transporter, permease protein |
| hmuV |
Gene: SMc01510: Hemin ABC transporter, ATPase protein |
Gene: NGR_c24600: Hemin ABC transporter, ATPase protein |
Gene: RL3700: Hemin ABC transporter, ATPase protein |
Gene: RHE_CH03271: Hemin ABC transporter, ATPase protein |
Gene: Atu2458: Hemin ABC transporter, ATPase protein |
Gene: Meso_1444: Hemin ABC transporter, ATPase protein |
Gene: mll1149: Hemin ABC transporter, ATPase protein |
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Gene: BQ04120: Hemin ABC transporter, ATPase protein |
Gene: RPA2118: Hemin ABC transporter, ATPase protein |
Gene: blr7079: Hemin ABC transporter, ATPase protein |
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Gene: Nwi_2322: Hemin ABC transporter, ATPase protein |
Gene: AZC_4387: Hemin ABC transporter, ATPase protein |
Gene: Xaut_4194: Hemin ABC transporter, ATPase protein |
Hemin ABC transporter, ATPase protein |
| CRON 3. | ||||||||||||||||
| hmuR |
*
Sinorhizobium meliloti 1021 Site: position = -119 score = 4.33987 sequence = TATGACATCCGTTTTCAAG Gene: SMc04205: TonB-dependent iron siderophore receptor protein |
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Rhizobium sp. NGR234 Site: position = -1 score = 4.4535 sequence = ATTGATTTTTTTACTCATG Gene: NGR_c23520: TonB-dependent iron siderophore receptor protein |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -56 score = 4.49315 sequence = GTTGAGTAATCCGGTCAAG Gene: Atu3385: TonB-dependent iron siderophore receptor protein |
*
Mesorhizobium sp. BNC1 Site: position = -144 score = 4.95872 sequence = CTTGACATCAATAATCAAC Gene: Meso_1440: TonB-dependent iron siderophore receptor protein |
*
Mesorhizobium loti MAFF303099 Site: position = -83 score = 5.17004 sequence = CTTGACTTGAATAATCATG Gene: mlr1155: TonB-dependent iron siderophore receptor protein |
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Gene: RPA2124: TonB-dependent iron siderophore receptor protein |
Gene: bll7076: TonB-dependent iron siderophore receptor protein |
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2
Azorhizobium caulinodans ORS 571 Gene: AZC_4384: TonB-dependent iron siderophore receptor protein Gene: AZC_1632: TonB-dependent iron siderophore receptor protein |
Gene: Xaut_4191: TonB-dependent iron siderophore receptor protein |
TonB-dependent iron siderophore receptor protein |
| SMc01514 |
*
Sinorhizobium meliloti 1021 Site: position = -115 score = 4.90856 sequence = CTTGACTTCATTACTCATA Gene: SMc01514: hypothetical protein |
*
Rhizobium sp. NGR234 Site: position = -118 score = 4.90856 sequence = CTTGACTGCATTACTCATA Site: position = -80 score = 4.00447 sequence = CCGGATAGTTGCAGTCAAG Gene: NGR_c24560: hypothetical protein |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -77 score = 4.20598 sequence = GGAGACAAATACAGTCAAG Site: position = -115 score = 4.79375 sequence = CTTGACTTTCTTACTCATA Gene: RL3695: hypothetical protein |
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Rhizobium etli CFN 42 Site: position = -118 score = 4.79375 sequence = CTTGACTTTCTTACTCATA Gene: RHE_CH03266: hypothetical protein |
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Gene: Meso_1439: hypothetical protein |
Gene: mlr1156: hypothetical protein |
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hypothetical protein |
| exbB |
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Gene: Meso_1438: Ferric siderophore transport system, proton channel |
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Gene: RPA2127: Ferric siderophore transport system, proton channel |
Gene: bll7073: Ferric siderophore transport system, proton channel |
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Gene: Xaut_4273: Ferric siderophore transport system, proton channel |
Ferric siderophore transport system, proton channel |
| exbD |
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2
Mesorhizobium sp. BNC1 Gene: Meso_1437: Biopolymer transport protein ExbD/TolR Gene: Meso_1436: Biopolymer transport protein ExbD/TolR |
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Gene: RPA2128: Biopolymer transport protein ExbD/TolR |
Gene: bll7072: Biopolymer transport protein ExbD/TolR |
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Gene: Xaut_4274: Biopolymer transport protein ExbD/TolR |
Biopolymer transport protein ExbD/TolR |
| tonB |
Gene: SMc01515: Ferric siderophore transport system energy transducer |
Gene: NGR_c24550: Ferric siderophore transport system energy transducer |
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Gene: RHE_CH03265: Ferric siderophore transport system energy transducer |
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Gene: Meso_1435: Ferric siderophore transport system energy transducer |
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2
Rhodopseudomonas palustris CGA009 Gene: RPA0156: Ferric siderophore transport system energy transducer Gene: RPA2129: Ferric siderophore transport system energy transducer |
Gene: bll7071: Ferric siderophore transport system energy transducer |
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Gene: Xaut_4275: Ferric siderophore transport system energy transducer |
Ferric siderophore transport system energy transducer |
| Meso_1434 |
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Gene: Meso_1434: hypothetical protein |
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hypothetical protein |
| PF03992 |
Gene: SMc01518: Hypothetical monooxygenase |
Gene: NGR_c24520: Hypothetical monooxygenase |
Gene: RL3691: Hypothetical monooxygenase |
Gene: RHE_CH03262: Hypothetical monooxygenase |
Gene: Atu2461: Hypothetical monooxygenase |
Gene: Meso_1433: Hypothetical monooxygenase |
Gene: mlr1159: Hypothetical monooxygenase |
Gene: BMEII0706: Hypothetical monooxygenase |
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Gene: RPA2125: Hypothetical monooxygenase |
2
Bradyrhizobium japonicum USDA 110 Gene: bll7423: Hypothetical monooxygenase Gene: bll7075: Hypothetical monooxygenase |
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Gene: Nwi_2325: Hypothetical monooxygenase |
Gene: AZC_4383: Hypothetical monooxygenase |
Gene: Xaut_4190: Hypothetical monooxygenase |
Hypothetical monooxygenase |
| PF10087 |
Gene: SMc01516: hypothetical protein |
*
Rhizobium sp. NGR234 Site: position = -124 score = 4.22895 sequence = CTTTACTATGATTATCAAG Site: position = -149 score = 4.86065 sequence = TATGATTAAAAAACTCATG Gene: NGR_c24540: hypothetical protein |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -82 score = 4.19896 sequence = CTTTACTCTAAAAATCAAG Site: position = -107 score = 4.61524 sequence = TATGATAAAAACAATCAAC Gene: RL3693: hypothetical protein |
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Rhizobium etli CFN 42 Site: position = -107 score = 3.98218 sequence = TATGATCAAAACAGTCTAC Site: position = -82 score = 4.19896 sequence = CTTTACTCTAAAAATCAAG Gene: RHE_CH03264: hypothetical protein |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -93 score = 3.95369 sequence = CTTTACTCCAAAACTCATC Site: position = -118 score = 3.73449 sequence = CATGAGGAAAATCATCACC Gene: Atu2383: hypothetical protein |
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hypothetical protein |
| SMc01517 |
Gene: SMc01517: hypothetical protein |
Gene: NGR_c24530: hypothetical protein |
Gene: RL3692: hypothetical protein |
Gene: RHE_CH03263: hypothetical protein |
Gene: Atu2382: hypothetical protein |
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hypothetical protein |
| CRON 4. | ||||||||||||||||
| fhuA2 |
*
Sinorhizobium meliloti 1021 Site: position = -93 score = 5.4433 sequence = CATGACTTAAAAAGTCATG Site: position = -50 score = 3.88473 sequence = CATGAGTGATTAGCTCACC Gene: SMc01657: TonB-dependent siderophore receptor |
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Rhizobium sp. NGR234 Site: position = -100 score = 5.35351 sequence = CATGACTTTAATAGTCATA Site: position = -57 score = 5.02604 sequence = CATGAGTGATTAAGTCATC Gene: NGR_c21740: TonB-dependent siderophore receptor |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -84 score = 5.23182 sequence = GATGACTAAAATAATCATC Gene: pRL120322: TonB-dependent siderophore receptor |
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Rhizobium etli CFN 42 Site: position = -84 score = 4.25716 sequence = GCTGACAAAAATAATCACC Gene: RHE_PF00469: TonB-dependent siderophore receptor |
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*
Mesorhizobium sp. BNC1 Site: position = -107 score = 4.88104 sequence = GTTGACATTGATAATCATG Gene: Meso_0338: TonB-dependent siderophore receptor |
|
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|
|
Gene: AZC_3240: TonB-dependent siderophore receptor |
|
TonB-dependent siderophore receptor |
| rhtX |
|
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|
|
Gene: Meso_0337: MFS family transporter |
|
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|
|
|
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|
|
MFS family transporter |
| mxcD |
|
|
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|
|
Gene: Meso_0336: Siderophore-interacting protein |
|
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|
|
Siderophore-interacting protein |
| fhuF |
Gene: SMc01658: Ferric reductase (1.6.99.14) |
Gene: NGR_c21750: Ferric reductase (1.6.99.14) |
Gene: pRL120321: Ferric reductase (1.6.99.14) |
Gene: RHE_PF00468: Ferric reductase (1.6.99.14) |
|
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|
|
Gene: Xaut_2784: Ferric reductase (1.6.99.14) |
Ferric reductase (1.6.99.14) |
| PF01497 |
Gene: SMc01659: Putative periplasmic substrate-binding transport protein, FepB-like |
Gene: NGR_c21760: Putative periplasmic substrate-binding transport protein, FepB-like |
|
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|
|
Putative periplasmic substrate-binding transport protein, FepB-like |
| CRON 5. | ||||||||||||||||
| exbB |
*
Sinorhizobium meliloti 1021 Site: position = -181 score = 4.31106 sequence = CTTGATTATTGTACTCCAC Gene: SMc02085: Ferric siderophore transport system, proton channel protein ExbB |
*
Rhizobium sp. NGR234 Site: position = -132 score = 4.57085 sequence = CATGATTATTATACTCCAG Gene: NGR_c13490: Ferric siderophore transport system, proton channel protein ExbB |
|
|
Gene: Atu0161: Ferric siderophore transport system, proton channel protein ExbB |
|
*
Mesorhizobium loti MAFF303099 Site: position = -84 score = 5.11728 sequence = GTTGACTGTTGCAGTCATC Site: position = -59 score = 4.99425 sequence = GTTGACTTGTATACTCATG Gene: mll4168: Ferric siderophore transport system, proton channel protein ExbB |
*
Brucella melitensis 16M Site: position = -164 score = 4.5122 sequence = CATGACTTGAAGTATCATA Gene: BMEI0365: Ferric siderophore transport system, proton channel protein ExbB |
Gene: BQ11710: Ferric siderophore transport system, proton channel protein ExbB |
Gene: RPA3278: Ferric siderophore transport system, proton channel protein ExbB |
|
|
2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_0703: Ferric siderophore transport system, proton channel protein ExbB Gene: Nwi_2040: Ferric siderophore transport system, proton channel protein ExbB |
Gene: AZC_1258: Ferric siderophore transport system, proton channel protein ExbB |
Gene: Xaut_4273: Ferric siderophore transport system, proton channel protein ExbB |
Ferric siderophore transport system, proton channel protein ExbB |
| exbD |
Gene: SMc02084: Ferric siderophore transport system, proton channel protein ExbD |
Gene: NGR_c13500: Ferric siderophore transport system, proton channel protein ExbD |
|
|
Gene: Atu0162: Ferric siderophore transport system, proton channel protein ExbD |
|
Gene: mll4167: Ferric siderophore transport system, proton channel protein ExbD |
Gene: BMEI0364: Ferric siderophore transport system, proton channel protein ExbD |
Gene: BQ11700: Ferric siderophore transport system, proton channel protein ExbD |
Gene: RPA3277: Ferric siderophore transport system, proton channel protein ExbD |
|
|
2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_0704: Ferric siderophore transport system, proton channel protein ExbD Gene: Nwi_2039: Ferric siderophore transport system, proton channel protein ExbD |
Gene: AZC_1259: Ferric siderophore transport system, proton channel protein ExbD |
Gene: Xaut_4274: Ferric siderophore transport system, proton channel protein ExbD |
Ferric siderophore transport system, proton channel protein ExbD |
| tonB |
|
|
|
|
Gene: Atu0163: Ferric siderophore transport system energy transducer |
|
Gene: mll4165: Ferric siderophore transport system energy transducer |
Gene: BMEI0363: Ferric siderophore transport system energy transducer |
|
Gene: RPA3276: Ferric siderophore transport system energy transducer |
|
|
2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_0705: Ferric siderophore transport system energy transducer Gene: Nwi_2038: Ferric siderophore transport system energy transducer |
Gene: AZC_1260: Ferric siderophore transport system energy transducer |
Gene: Xaut_4275: Ferric siderophore transport system energy transducer |
Ferric siderophore transport system energy transducer |
| CRON 6. | ||||||||||||||||
| shmR |
*
Sinorhizobium meliloti 1021 Site: position = -141 score = 4.32158 sequence = ATTGACAATCACACTCATG Site: position = -54 score = 3.85743 sequence = CTTGAGTTCGCCGCTCAAC Gene: SMc02726: Outer membrane heme receptor, TonB-dependent |
|
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -180 score = 4.8147 sequence = CATGATAGATATATTCAAC Site: position = -144 score = 4.72699 sequence = GTTGACAATGCTACTCATG Gene: RL3522: Outer membrane heme receptor, TonB-dependent |
*
Rhizobium etli CFN 42 Site: position = -179 score = 4.13852 sequence = CTTGATGGATTTGTTCAAG Site: position = -143 score = 5.08089 sequence = GTTGACAACAGAAGTCATG Gene: RHE_CH03076: Outer membrane heme receptor, TonB-dependent |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -137 score = 4.62957 sequence = GTTGACAGTGATCGTCATG Site: position = -164 score = 4.81479 sequence = CATGATTCAAAAAGTCATA Gene: Atu2287: Outer membrane heme receptor, TonB-dependent |
|
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|
*
Bartonella quintana str. Toulouse Site: position = -158 score = 5.06208 sequence = CTTGACTGCTTTTATCATG Gene: BQ04160: Outer membrane heme receptor, TonB-dependent |
|
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|
Outer membrane heme receptor, TonB-dependent |
| CRON 7. | ||||||||||||||||
| fecI |
*
Sinorhizobium meliloti 1021 Site: position = -170 score = 4.79155 sequence = CATGATTATCTCAATCAAC Gene: SMc04203: RNA polymerase, sigma-24 subunit, ECF subfamily |
|
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -133 score = 4.22236 sequence = CTTGACTCCTGTTATCACC Gene: pRL120319: RNA polymerase, sigma-24 subunit, ECF subfamily |
*
Rhizobium etli CFN 42 Site: position = -134 score = 4.22236 sequence = CTTGACTCCTGTTATCACC Gene: RHE_PF00462: RNA polymerase, sigma-24 subunit, ECF subfamily |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -131 score = 5.17267 sequence = CTTGATAATAATTGTCATG Gene: Atu3387: RNA polymerase, sigma-24 subunit, ECF subfamily |
|
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|
|
Gene: AZC_3242: RNA polymerase, sigma-24 subunit, ECF subfamily |
Gene: Xaut_2781: RNA polymerase, sigma-24 subunit, ECF subfamily |
RNA polymerase, sigma-24 subunit, ECF subfamily |
| fecR |
Gene: SMc04204: Iron siderophore sensor kinase |
|
|
|
Gene: Atu3386: Iron siderophore sensor kinase |
|
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|
|
Iron siderophore sensor kinase |
| CRON 8. | ||||||||||||||||
| irp6A |
*
Sinorhizobium meliloti 1021 Site: position = -59 score = 4.72535 sequence = GTTGACCGGTAAAGTCATG Gene: SMb21432: iron ABC transporter, periplasmic protein |
*
Rhizobium sp. NGR234 Site: position = -59 score = 5.1395 sequence = GTTGACTGGTAAAGTCATG Gene: NGR_b11200: iron ABC transporter, periplasmic protein |
|
|
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -62 score = 4.76903 sequence = CTTGACTAGTACAGTCAGA Gene: Atu3391: iron ABC transporter, periplasmic protein |
|
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iron ABC transporter, periplasmic protein |
| irp6A |
Gene: SMb21431: iron ABC transporter, periplasmic protein |
Gene: NGR_b11210: iron ABC transporter, periplasmic protein |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -65 score = 4.72784 sequence = CTTGATTCATTAAGTCATA Gene: RL2713: iron ABC transporter, periplasmic protein |
|
Gene: Atu3390: iron ABC transporter, periplasmic protein |
|
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iron ABC transporter, periplasmic protein |
| irp6B |
Gene: SMb21430: iron ABC transporter, permease protein |
Gene: NGR_b11220: iron ABC transporter, permease protein |
Gene: RL2714: iron ABC transporter, permease protein |
|
Gene: Atu3389: iron ABC transporter, permease protein |
|
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|
|
iron ABC transporter, permease protein |
| irp6C |
Gene: SMb21429: iron ABC transporter, ATP-binding protein |
Gene: NGR_b11230: iron ABC transporter, ATP-binding protein |
Gene: RL2715: iron ABC transporter, ATP-binding protein |
|
Gene: Atu3388: iron ABC transporter, ATP-binding protein |
|
|
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|
iron ABC transporter, ATP-binding protein |
| CRON 9. | ||||||||||||||||
| cycF |
*
Sinorhizobium meliloti 1021 Site: position = -182 score = 4.64153 sequence = GATGAGTTCTATATTCATA Gene: SMc00045: Cytochrome c-556 |
*
Rhizobium sp. NGR234 Site: position = -190 score = 5.01725 sequence = CATGAATTTAAAATTCATG Gene: NGR_c07330: Cytochrome c-556 |
Gene: RL1346: Cytochrome c-556 |
Gene: RHE_CH01214: Cytochrome c-556 |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -149 score = 3.92071 sequence = CTAGACTTCTGTTTTCACG Gene: Atu0881: Cytochrome c-556 |
|
*
Mesorhizobium loti MAFF303099 Site: position = -28 score = 3.94655 sequence = AATGAGAAAGCTTGTCATC Gene: mlr7638: Cytochrome c-556 |
|
|
Gene: RPA3973: Cytochrome c-556 |
Gene: bll5913: Cytochrome c-556 |
Gene: BBta_5606: Cytochrome c-556 |
|
Gene: AZC_1821: Cytochrome c-556 |
|
Cytochrome c-556 |
| cycG |
Gene: SMc00086: diheme cytochrome c-553 |
Gene: NGR_c07340: diheme cytochrome c-553 |
Gene: RL1347: diheme cytochrome c-553 |
Gene: RHE_CH01215: diheme cytochrome c-553 |
Gene: Atu0882: diheme cytochrome c-553 |
|
Gene: mlr7639: diheme cytochrome c-553 |
|
|
Gene: RPA3972: diheme cytochrome c-553 |
|
Gene: BBta_5605: diheme cytochrome c-553 |
|
|
|
diheme cytochrome c-553 |
| CRON 10. | ||||||||||||||||
| araX1 |
*
Sinorhizobium meliloti 1021 Site: position = -116 score = 4.03539 sequence = AATGAGAATACGAGTCAAC Gene: SMa1749: Siderophore uptake regulator, AraC family |
|
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|
Siderophore uptake regulator, AraC family |
| CRON 11. | ||||||||||||||||
| PF06904 |
*
Sinorhizobium meliloti 1021 Site: position = -88 score = 3.85743 sequence = GTTGAGCGGCGAACTCAAG Site: position = -1 score = 4.32158 sequence = CATGAGTGTGATTGTCAAT Gene: SMc02727: extensin-like protein |
*
Rhizobium sp. NGR234 Site: position = -138 score = 4.4535 sequence = CATGAGTAAAAAAATCAAT Gene: NGR_c23530: extensin-like protein |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -84 score = 4.72699 sequence = CATGAGTAGCATTGTCAAC Site: position = -48 score = 4.8147 sequence = GTTGAATATATCTATCATG Gene: RL3523: extensin-like protein |
|
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -191 score = 3.91654 sequence = GAAGACATGACTGGTCAAG Gene: Atu2288: extensin-like protein |
|
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|
|
extensin-like protein |
| CRON 12. | ||||||||||||||||
| frpB |
|
|
|
|
|
|
|
*
Brucella melitensis 16M Site: position = -261 score = 4.9497 sequence = TATGAATGTATTAGTCATC Gene: BMEII0105: Iron-regulated outer membrane receptor FrpB |
|
|
|
|
|
|
|
Iron-regulated outer membrane receptor FrpB |
| CRON 13. | ||||||||||||||||
| fhuA1 |
*
Sinorhizobium meliloti 1021 Site: position = -61 score = 4.0976 sequence = GTTGACAGTACCGGTCACG Site: position = -85 score = 4.09547 sequence = GTTGATCTAGACACTCATC Gene: SMc01611: TonB-dependent siderophore receptor |
|
|
|
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -82 score = 4.09419 sequence = CCTGATGTAAACACTCATC Gene: Atu0409: TonB-dependent siderophore receptor |
|
|
|
|
|
Gene: bll4920: TonB-dependent siderophore receptor |
|
Gene: Nwi_1338: TonB-dependent siderophore receptor |
|
|
TonB-dependent siderophore receptor |
| CRON 14. | ||||||||||||||||
| BMEI0542 |
|
|
|
|
|
|
|
*
Brucella melitensis 16M Site: position = -133 score = 5.05086 sequence = CATGATTAACATAATCATG Gene: BMEI0542: OMPA-like superfamily |
|
|
|
|
|
|
|
OMPA-like superfamily |
| CRON 15. | ||||||||||||||||
| eitA |
|
|
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -82 score = 4.02749 sequence = GTTGATTTGTTTGGTCTTG Gene: pRL120713: iron ABC transporter, periplasmic component |
*
Rhizobium etli CFN 42 Site: position = -35 score = 4.13227 sequence = GTTGATAAATTTGGTCTTG Gene: RHE_PF00269: iron ABC transporter, periplasmic component |
|
|
|
|
|
|
|
|
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|
|
iron ABC transporter, periplasmic component |
| eitB |
|
|
Gene: pRL120712: iron ABC transporter, permease component |
Gene: RHE_PF00270: iron ABC transporter, permease component |
|
|
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|
|
|
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|
|
iron ABC transporter, permease component |
| eitC |
|
|
Gene: pRL120711: iron ABC transporter, ATPase component |
Gene: RHE_PF00271: iron ABC transporter, ATPase component |
|
|
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|
|
|
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|
|
iron ABC transporter, ATPase component |
| CRON 16. | ||||||||||||||||
| rirA |
*
Sinorhizobium meliloti 1021 Site: position = -171 score = 4.03435 sequence = CTTAACTTAGTCAATCATA Gene: SMc00785: Iron-responsive transcriptional repressor, Rrf2 family |
Gene: NGR_c03450: Iron-responsive transcriptional repressor, Rrf2 family |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -85 score = 3.82855 sequence = GCTGAATGCGAATTTCATA Gene: RL0777: Iron-responsive transcriptional repressor, Rrf2 family |
*
Rhizobium etli CFN 42 Site: position = -87 score = 3.82855 sequence = GCTGAATGCGAATTTCATA Gene: RHE_CH00735: Iron-responsive transcriptional repressor, Rrf2 family |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -146 score = 4.65978 sequence = CTTGACTTGTTTGTTCATG Gene: Atu0201: Iron-responsive transcriptional repressor, Rrf2 family |
Gene: Meso_1445: Iron-responsive transcriptional repressor, Rrf2 family |
*
Mesorhizobium loti MAFF303099 Site: position = -172 score = 4.55467 sequence = GTTGACGAGAATATTCATC Gene: mlr1147: Iron-responsive transcriptional repressor, Rrf2 family |
*
Brucella melitensis 16M Site: position = -183 score = 3.62088 sequence = GGTGAGAAAAGGTTTCATA Gene: BMEII0707: Iron-responsive transcriptional repressor, Rrf2 family |
Gene: BQ04990: Iron-responsive transcriptional repressor, Rrf2 family |
|
|
|
|
|
|
Iron-responsive transcriptional repressor, Rrf2 family |
| CRON 17. | ||||||||||||||||
| tonB |
|
|
|
|
|
|
|
|
*
Bartonella quintana str. Toulouse Site: position = -100 score = 5.06208 sequence = CATGATAAAAGCAGTCAAG Gene: BQ04170: Ferric siderophore transport system energy transducer |
|
|
|
|
|
|
Ferric siderophore transport system energy transducer |
| CRON 18. | ||||||||||||||||
| bfd |
*
Sinorhizobium meliloti 1021 Site: position = -68 score = 3.86781 sequence = GTTGACGGCAAATGTCCTC Gene: SMc03787: Bacterioferritin ferredoxin |
*
Rhizobium sp. NGR234 Site: position = -11 score = 3.86781 sequence = GTTGACGGCAAATGTCCTC Gene: NGR_c31850: Bacterioferritin ferredoxin |
Gene: RL4696: Bacterioferritin ferredoxin |
Gene: RHE_CH04082: Bacterioferritin ferredoxin |
|
*
Mesorhizobium sp. BNC1 Site: position = -232 score = 4.82043 sequence = CATGACCTTGAAAGTCAAG Gene: Meso_4047: Bacterioferritin ferredoxin |
Gene: msr5525: Bacterioferritin ferredoxin |
*
Brucella melitensis 16M Site: position = -345 score = 4.08031 sequence = CATGgaTATTtaAcTCATa Gene: BMEII0705: Bacterioferritin ferredoxin |
|
|
Gene: bsl6681: Bacterioferritin ferredoxin |
|
Gene: Nwi_2476: Bacterioferritin ferredoxin |
|
Gene: Xaut_3766: Bacterioferritin ferredoxin |
Bacterioferritin ferredoxin |
| bfr |
Gene: SMc03786: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: NGR_c31840: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: RL4695: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: RHE_CH04081: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -322 score = 4.49766 sequence = CtTGACatTTActGTCcTG Gene: Atu2771: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: Meso_4048: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: mlr5526: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: BMEII0704: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
|
Gene: RPA3600: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: bll6680: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: BBta_6242: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: Nwi_2475: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: AZC_2246: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
Gene: Xaut_3765: bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
bacterioferritin (Cytochrome B-1) (Cytochrome B-557) |
| CRON 19. | ||||||||||||||||
| fhuC |
|
|
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -56 score = 4.19425 sequence = GTTGATTGCCGCTCTCATC Gene: pRL100328: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
|
|
|
|
|
|
|
|
|
|
|
Gene: Xaut_2780: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
| fhuD |
|
|
Gene: pRL100327: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
Gene: RHE_PF00464: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
|
|
|
|
|
|
|
|
|
Gene: AZC_3248: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
|
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
| fhuB |
|
|
Gene: pRL100326: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB |
Gene: RHE_PF00465: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB |
|
|
|
|
|
|
|
|
|
Gene: AZC_3249: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB |
|
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB |
| vbsC |
|
|
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -49 score = 4.22236 sequence = GGTGATAACAGGAGTCAAG Gene: pRL120320: vicibactin acetylase |
*
Rhizobium etli CFN 42 Site: position = -49 score = 4.22236 sequence = GGTGATAACAGGAGTCAAG Gene: RHE_PF00463: vicibactin acetylase |
|
|
|
|
|
|
|
|
|
|
|
vicibactin acetylase |
| CRON 20. | ||||||||||||||||
| PF04773 |
Gene: SMb20775: putative exported protein, TonB-dependent receptor protein |
Gene: NGR_b21160: putative exported protein, TonB-dependent receptor protein |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -55 score = 4.25607 sequence = CTTGACTTTTCTTTTCTAC Gene: RL3165: putative exported protein, TonB-dependent receptor protein |
*
Rhizobium etli CFN 42 Site: position = -55 score = 4.43907 sequence = CTTGACTTTTTCACTCTAC Gene: RHE_CH02695: putative exported protein, TonB-dependent receptor protein |
|
|
|
|
|
|
|
|
|
|
|
putative exported protein, TonB-dependent receptor protein |
| cyaK |
Gene: SMb20776: Adenylate cyclase (EC 4.6.1.1) |
Gene: NGR_b21170: Adenylate cyclase (EC 4.6.1.1) |
Gene: RL3166: Adenylate cyclase (EC 4.6.1.1) |
Gene: RHE_CH02696: Adenylate cyclase (EC 4.6.1.1) |
|
|
|
|
|
|
|
|
|
|
|
Adenylate cyclase (EC 4.6.1.1) |
| CRON 21. | ||||||||||||||||
| rhrA |
*
Sinorhizobium meliloti 1021 Site: position = -108 score = 4.9869 sequence = CAAGACTATTTAAGTCATG Gene: SMa2412: transcriptional activator of rhizobactin biosynthesis and transport |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
transcriptional activator of rhizobactin biosynthesis and transport |
| CRON 22. | ||||||||||||||||
| rhtX |
*
Sinorhizobium meliloti 1021 Site: position = -59 score = 4.57596 sequence = GATGACGGCAACACTCATG Gene: SMa2337: rhizobactin siderophore transporter, MFS family |
|
|
|
|
|
|
|
|
|
|
|
|
Gene: AZC_1329: rhizobactin siderophore transporter, MFS family |
|
rhizobactin siderophore transporter, MFS family |
| rhbA |
Gene: SMa2400: Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) |
| rhbB |
Gene: SMa2402: Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase |
| rhbC |
Gene: SMa2404: Siderophore synthetase superfamily, group A |
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Gene: RPA2390: Siderophore synthetase superfamily, group A |
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Gene: Nwi_2302: Siderophore synthetase superfamily, group A |
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Siderophore synthetase superfamily, group A |
| rhbD |
Gene: SMa2406: Siderophore synthetase small component, acetyltransferase |
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Siderophore synthetase small component, acetyltransferase |
| rhbE |
Gene: SMa2408: Siderophore biosynthesis protein, monooxygenase |
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Siderophore biosynthesis protein, monooxygenase |
| rhbF |
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Sinorhizobium meliloti 1021 Site: position = -10 score = 3.48112 sequence = GGAGATTTCTATGCTCATG Gene: SMa2410: Siderophore synthetase superfamily, group C @ Siderophore synthetase component, ligase |
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Siderophore synthetase superfamily, group C @ Siderophore synthetase component, ligase |
| CRON 23. | ||||||||||||||||
| fepB |
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Sinorhizobium meliloti 1021 Site: position = -209 score = 4.12807 sequence = CATGAAAGCTTCGCTCAAC Gene: SMa1746: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
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Gene: AZC_1624: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
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Ferrienterobactin ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD |
| fepD |
Gene: SMa1745: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease component FhuB |
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Gene: AZC_1623: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease component FhuB |
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Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease component FhuB |
| fepG |
Gene: SMa1742: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease protein FhuG |
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Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease protein FhuG |
| fepC |
Gene: SMa1741: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
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Gene: AZC_1625: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
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Ferrienterobactin ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
| mxcB |
Gene: SMa1740: siderophore-interacting protein |
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Gene: Atu2454: siderophore-interacting protein |
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Gene: AZC_1622: siderophore-interacting protein |
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siderophore-interacting protein |
| CRON 24. | ||||||||||||||||
| PF00501 |
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Sinorhizobium meliloti 1021 Site: position = -53 score = 4.43464 sequence = CTTGACGATCAAAGTCAGC Gene: SMc00592: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Rhizobium sp. NGR234 Site: position = -41 score = 4.13692 sequence = CTTGACGACGAGAGTCAGC Gene: NGR_c09100: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Rhizobium etli CFN 42 Site: position = -11 score = 5.15037 sequence = GTTGACTGCTATTGTCAAG Gene: RHE_PE00160: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| CRON 25. | ||||||||||||||||
| fhuA3 |
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Sinorhizobium meliloti 1021 Site: position = -102 score = 4.12807 sequence = GTTGAGCGAAGCTTTCATG Gene: SMa1747: Ferric hydroxamate outer membrane receptor FhuA |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -95 score = 4.09061 sequence = GTTGACTCCAATTCTCCTG Gene: pRL100325: Ferric hydroxamate outer membrane receptor FhuA |
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Gene: Xaut_2779: Ferric hydroxamate outer membrane receptor FhuA |
Ferric hydroxamate outer membrane receptor FhuA |
| CRON 26. | ||||||||||||||||
| vbsS |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -316 score = 4.06767 sequence = GAAGAAAAAAATTCTCATC Gene: pRL120315: Vicibactin biosynthesis, peptide synthetase |
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Rhizobium etli CFN 42 Site: position = -324 score = 4.06767 sequence = GAAGAAAAAAATTCTCATC Gene: RHE_PF00457: Vicibactin biosynthesis, peptide synthetase |
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Gene: AZC_3246: Vicibactin biosynthesis, peptide synthetase |
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Vicibactin biosynthesis, peptide synthetase |
| vbsO |
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Gene: pRL120314: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein |
Gene: RHE_PF00456: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein |
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Gene: AZC_3247: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein |
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Vicibactin biosynthesis, L-lysine 6-monooxygenase protein |
| CRON 27. | ||||||||||||||||
| vbsA |
Gene: SMa2339: Vicibactin synthetase small component, acetyltransferase |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -137 score = 4.06767 sequence = GATGAGAATTTTTTTCTTC Gene: pRL120316: Vicibactin synthetase small component, acetyltransferase |
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Rhizobium etli CFN 42 Site: position = -126 score = 4.06767 sequence = GATGAGAATTTTTTTCTTC Gene: RHE_PF00459: Vicibactin synthetase small component, acetyltransferase |
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Gene: BBta_1092: Vicibactin synthetase small component, acetyltransferase |
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Gene: AZC_3245: Vicibactin synthetase small component, acetyltransferase |
Gene: Xaut_2789: Vicibactin synthetase small component, acetyltransferase |
Vicibactin synthetase small component, acetyltransferase |
| vbsD |
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Gene: pRL120317: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps |
Gene: RHE_PF00460: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps |
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Gene: AZC_3244: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps |
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Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps |
| vsbL |
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Gene: pRL120318: Vicibactin biosynthesis, putative cystathionine beta-lyase |
Gene: RHE_PF00461: Vicibactin biosynthesis, putative cystathionine beta-lyase |
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Gene: AZC_3243: Vicibactin biosynthesis, putative cystathionine beta-lyase |
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Vicibactin biosynthesis, putative cystathionine beta-lyase |
| rhtA |
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Sinorhizobium meliloti 1021 Site: position = -79 score = 4.9869 sequence = CATGACTTAAATAGTCTTG Gene: SMa2414: Rhizobactin receptor precursor RhtA |
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Rhizobactin receptor precursor RhtA |
| CRON 28. | ||||||||||||||||
| rhtX2 |
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Sinorhizobium meliloti 1021 Site: position = -64 score = 4.87068 sequence = CCTGAATGCAATAGTCAAG Gene: SMc02889: ferrisiderophore permease, MFS family |
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ferrisiderophore permease, MFS family |
| viuA |
Gene: SMc02890: Ferrisiderophore TonB-dependent outer membrane receptor |
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Ferrisiderophore TonB-dependent outer membrane receptor |
| CRON 29. | ||||||||||||||||
| fbpA |
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Sinorhizobium meliloti 1021 Site: position = -47 score = 4.03435 sequence = TATGATTGACTAAGTTAAG Gene: SMc00784: Ferric iron ABC transporter, periplasmic protein |
Gene: NGR_c03440: Ferric iron ABC transporter, periplasmic protein |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -129 score = 4.82683 sequence = TATGAAATATTTAGTCAAG Site: position = -79 score = 4.28455 sequence = CTTGAAATCGGCAGTCAGG Gene: RL4584: Ferric iron ABC transporter, periplasmic protein |
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Rhizobium etli CFN 42 Site: position = -68 score = 4.75725 sequence = CTTGAAATAGGTAGTCAAG Site: position = -118 score = 4.1188 sequence = TTTGAAATATCAGGTCAAG Gene: RHE_CH04056: Ferric iron ABC transporter, periplasmic protein |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -31 score = 4.65978 sequence = CATGAACAAACAAGTCAAG Gene: Atu0202: Ferric iron ABC transporter, periplasmic protein Site: position = -66 score = 4.29276 sequence = CTTGATTTGCGCCGTCATG Gene: Atu0407: Ferric iron ABC transporter, periplasmic protein |
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Mesorhizobium sp. BNC1 Site: position = -155 score = 4.29882 sequence = CTTGACTACTATAGTTTAG Gene: Meso_0170: Ferric iron ABC transporter, periplasmic protein |
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Mesorhizobium loti MAFF303099 Site: position = -67 score = 4.90255 sequence = GTTGACTATTCGTGTCATG Gene: mlr3495: Ferric iron ABC transporter, periplasmic protein |
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Brucella melitensis 16M Site: position = -52 score = 4.15424 sequence = CCTGATCCATATACTCATG Gene: BMEII0584: Ferric iron ABC transporter, periplasmic protein |
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Gene: RPA4152: Ferric iron ABC transporter, periplasmic protein |
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Azorhizobium caulinodans ORS 571 Gene: AZC_2245: Ferric iron ABC transporter, periplasmic protein Gene: AZC_3358: Ferric iron ABC transporter, periplasmic protein |
Gene: Xaut_3764: Ferric iron ABC transporter, periplasmic protein |
Ferric iron ABC transporter, periplasmic protein |
| fbpB |
Gene: SMc00775: Ferric iron ABC transporter, permease protein |
Gene: NGR_c03340: Ferric iron ABC transporter, permease protein |
Gene: RL4583: Ferric iron ABC transporter, permease protein |
Gene: RHE_CH04057: Ferric iron ABC transporter, permease protein |
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Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0408: Ferric iron ABC transporter, permease protein Gene: Atu0613: Ferric iron ABC transporter, permease protein |
Gene: Meso_0169: Ferric iron ABC transporter, permease protein |
Gene: mlr3497: Ferric iron ABC transporter, permease protein |
Gene: BMEII0585: Ferric iron ABC transporter, permease protein |
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Gene: RPA4153: Ferric iron ABC transporter, permease protein |
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Gene: AZC_2244: Ferric iron ABC transporter, permease protein |
Gene: Xaut_3763: Ferric iron ABC transporter, permease protein |
Ferric iron ABC transporter, permease protein |
| fbpC |
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Gene: RL4582: Ferric iron ABC transporter, ATP-binding protein |
Gene: RHE_CH04058: Ferric iron ABC transporter, ATP-binding protein |
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Gene: mlr3498: Ferric iron ABC transporter, ATP-binding protein |
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Ferric iron ABC transporter, ATP-binding protein |
| CRON 30. | ||||||||||||||||
| fumC |
Gene: SMc00149: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: NGR_c17050: Fumarate hydratase class II (EC 4.2.1.2) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -119 score = 4.01568 sequence = CATGACTTCCGATTTCAAT Gene: RL2701: Fumarate hydratase class II (EC 4.2.1.2) |
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Rhizobium etli CFN 42 Site: position = -119 score = 4.09018 sequence = CATGACTGTGATCATCAAT Gene: RHE_CH02383: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: Atu1616: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: Meso_0355: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: mll8172: Fumarate hydratase class II (EC 4.2.1.2) |
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Brucella melitensis 16M Site: position = -124 score = 4.4507 sequence = CTTGACATTTATATTCACA Gene: BMEII1051: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: BQ10770: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: RPA3500: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: blr6519: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: BBta_6106: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: Nwi_2353: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: AZC_2566: Fumarate hydratase class II (EC 4.2.1.2) |
Gene: Xaut_1667: Fumarate hydratase class II (EC 4.2.1.2) |
Fumarate hydratase class II (EC 4.2.1.2) |
| CRON 31. | ||||||||||||||||
| hbpA |
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Bartonella quintana str. Toulouse Site: position = -260 score = 4.36032 sequence = CAGGACTCATATTATCATG Gene: BQ02420: Hemin binding protein A |
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Hemin binding protein A |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |