Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RirA in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL0777
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Statistics of regulated genes:
- Genes 45
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 129 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -137
Score: 4.1
Sequence: GATGAGAATTTTTTTCTTC
Locus tag: pRL120316
Name: vbsA
Funciton: Vicibactin synthetase small component, acetyltransferase
Locus tag: pRL120317
Name: vbsD
Funciton: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
Locus tag: pRL120318
Name: vsbL
Funciton: Vicibactin biosynthesis, putative cystathionine beta-lyase
vbsA
Vicibactin synthetase small component, acetyltransferase
vbsD
Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
vsbL
Vicibactin biosynthesis, putative cystathionine beta-lyase

Position: -116
Score: 4.2
Sequence: CTTGACTGTATTTGTCTCC
Position: -78
Score: 4.8
Sequence: TATGAGTAAGAAAGTCAAG
Locus tag: RL3696
Name: hmuP
Funciton: Hemin ABC transporter, hemin uptake protein
Locus tag: RL3697
Name: hmuS
Funciton: Hemin transport system, degrading protein
Locus tag: RL3698
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: RL3699
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
Locus tag: RL3700
Name: hmuV
Funciton: Hemin ABC transporter, ATPase protein
hmuP
Hemin ABC transporter, hemin uptake protein
hmuS
Hemin transport system, degrading protein
hmuT
Hemin ABC transporter, periplasmic protein
hmuU
Hemin ABC transporter, permease protein
hmuV
Hemin ABC transporter, ATPase protein

Position: -49
Score: 4.2
Sequence: GGTGATAACAGGAGTCAAG
Locus tag: pRL120320
Name: vbsC
Funciton: vicibactin acetylase
vbsC
vicibactin acetylase

Position: -56
Score: 4.2
Sequence: GTTGATTGCCGCTCTCATC
Locus tag: pRL100328
Name: fhuC
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
Locus tag: pRL100327
Name: fhuD
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: pRL100326
Name: fhuB
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
fhuC
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
fhuD
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
fhuB
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB

Position: -55
Score: 4.3
Sequence: CTTGACTTTTCTTTTCTAC
Locus tag: RL3165
Name: PF04773
Funciton: putative exported protein, TonB-dependent receptor protein
Locus tag: RL3166
Name: cyaK
Funciton: Adenylate cyclase (EC 4.6.1.1)
PF04773
putative exported protein, TonB-dependent receptor protein
cyaK
Adenylate cyclase (EC 4.6.1.1)

Position: -107
Score: 4.6
Sequence: TATGATAAAAACAATCAAC
Position: -82
Score: 4.2
Sequence: CTTTACTCTAAAAATCAAG
Locus tag: RL3693
Name: PF10087
Funciton: hypothetical protein
Locus tag: RL3692
Name: null
Funciton: hypothetical protein
Locus tag: RL3691
Name: PF03992
Funciton: Hypothetical monooxygenase
PF10087
hypothetical protein
hypothetical protein
PF03992
Hypothetical monooxygenase

Position: -65
Score: 4.7
Sequence: CTTGATTCATTAAGTCATA
Locus tag: RL2713
Name: irp6A
Funciton: iron ABC transporter, periplasmic protein
Locus tag: RL2714
Name: irp6B
Funciton: iron ABC transporter, permease protein
Locus tag: RL2715
Name: irp6C
Funciton: iron ABC transporter, ATP-binding protein
irp6A
iron ABC transporter, periplasmic protein
irp6B
iron ABC transporter, permease protein
irp6C
iron ABC transporter, ATP-binding protein

Position: -133
Score: 4.2
Sequence: CTTGACTCCTGTTATCACC
Locus tag: pRL120319
Name: fecI
Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily
fecI
RNA polymerase, sigma-24 subunit, ECF subfamily

Position: -180
Score: 4.8
Sequence: CATGATAGATATATTCAAC
Position: -144
Score: 4.7
Sequence: GTTGACAATGCTACTCATG
Locus tag: RL3522
Name: shmR
Funciton: Outer membrane heme receptor, TonB-dependent
shmR
Outer membrane heme receptor, TonB-dependent

Position: -84
Score: 5.2
Sequence: GATGACTAAAATAATCATC
Locus tag: pRL120322
Name: fhuA2
Funciton: TonB-dependent siderophore receptor
Locus tag: pRL120321
Name: fhuF
Funciton: Ferric reductase (1.6.99.14)
fhuA2
TonB-dependent siderophore receptor
fhuF
Ferric reductase (1.6.99.14)

Position: -166
Score: 4.7
Sequence: CTTGACTAGTGTTGTCAGC
Locus tag: RL2583
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RL2582
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RL2581
Name: null
Funciton: hypothetical protein
Locus tag: RL2580
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: RL2579
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RL2578
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: RL2577
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: RL2576
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
sufS2
Cysteine desulfurase (EC 2.8.1.7)
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
hypothetical protein
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
sufA
Iron binding protein SufA for iron-sulfur cluster assembly

Position: -84
Score: 4.7
Sequence: CATGAGTAGCATTGTCAAC
Position: -48
Score: 4.8
Sequence: GTTGAATATATCTATCATG
Locus tag: RL3523
Name: PF06904
Funciton: extensin-like protein
PF06904
extensin-like protein

Position: -129
Score: 4.8
Sequence: TATGAAATATTTAGTCAAG
Position: -79
Score: 4.3
Sequence: CTTGAAATCGGCAGTCAGG
Locus tag: RL4584
Name: fbpA
Funciton: Ferric iron ABC transporter, periplasmic protein
Locus tag: RL4583
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: RL4582
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
fbpA
Ferric iron ABC transporter, periplasmic protein
fbpB
Ferric iron ABC transporter, permease protein
fbpC
Ferric iron ABC transporter, ATP-binding protein

Position: -85
Score: 3.8
Sequence: GCTGAATGCGAATTTCATA
Locus tag: RL0777
Name: rirA
Funciton: Iron-responsive transcriptional repressor, Rrf2 family
rirA
Iron-responsive transcriptional repressor, Rrf2 family

Position: -82
Score: 4
Sequence: GTTGATTTGTTTGGTCTTG
Locus tag: pRL120713
Name: eitA
Funciton: iron ABC transporter, periplasmic component
Locus tag: pRL120712
Name: eitB
Funciton: iron ABC transporter, permease component
Locus tag: pRL120711
Name: eitC
Funciton: iron ABC transporter, ATPase component
eitA
iron ABC transporter, periplasmic component
eitB
iron ABC transporter, permease component
eitC
iron ABC transporter, ATPase component

Position: -115
Score: 4.8
Sequence: CTTGACTTTCTTACTCATA
Position: -77
Score: 4.2
Sequence: GGAGACAAATACAGTCAAG
Locus tag: RL3695
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -119
Score: 4
Sequence: CATGACTTCCGATTTCAAT
Locus tag: RL2701
Name: fumC
Funciton: Fumarate hydratase class II (EC 4.2.1.2)
fumC
Fumarate hydratase class II (EC 4.2.1.2)

Position: -316
Score: 4.1
Sequence: GAAGAAAAAAATTCTCATC
Locus tag: pRL120315
Name: vbsS
Funciton: Vicibactin biosynthesis, peptide synthetase
Locus tag: pRL120314
Name: vbsO
Funciton: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
vbsS
Vicibactin biosynthesis, peptide synthetase
vbsO
Vicibactin biosynthesis, L-lysine 6-monooxygenase protein

Position: -95
Score: 4.1
Sequence: GTTGACTCCAATTCTCCTG
Locus tag: pRL100325
Name: fhuA3
Funciton: Ferric hydroxamate outer membrane receptor FhuA
fhuA3
Ferric hydroxamate outer membrane receptor FhuA
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