Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RirA in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL0777
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Statistics of regulated genes:
- Genes 45
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 129 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -137
Score: 4.1
Sequence: GATGAGAATTTTTTTCTTC
Locus tag: pRL120316
Name: vbsA
Funciton: Vicibactin synthetase small component, acetyltransferase
Locus tag: pRL120317
Name: vbsD
Funciton: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
Locus tag: pRL120318
Name: vsbL
Funciton: Vicibactin biosynthesis, putative cystathionine beta-lyase
pRL120316
vbsA
Vicibactin synthetase small component, acetyltransferase
pRL120317
vbsD
Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
pRL120318
vsbL
Vicibactin biosynthesis, putative cystathionine beta-lyase
Position: -116
Score: 4.2
Sequence: CTTGACTGTATTTGTCTCC
Position: -78
Score: 4.8
Sequence: TATGAGTAAGAAAGTCAAG
Locus tag: RL3696
Name: hmuP
Funciton: Hemin ABC transporter, hemin uptake protein
Locus tag: RL3697
Name: hmuS
Funciton: Hemin transport system, degrading protein
Locus tag: RL3698
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: RL3699
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
Locus tag: RL3700
Name: hmuV
Funciton: Hemin ABC transporter, ATPase protein
RL3696
hmuP
Hemin ABC transporter, hemin uptake protein
RL3697
hmuS
Hemin transport system, degrading protein
RL3698
hmuT
Hemin ABC transporter, periplasmic protein
RL3699
hmuU
Hemin ABC transporter, permease protein
RL3700
hmuV
Hemin ABC transporter, ATPase protein
Position: -49
Score: 4.2
Sequence: GGTGATAACAGGAGTCAAG
Locus tag: pRL120320
Name: vbsC
Funciton: vicibactin acetylase
pRL120320
vbsC
vicibactin acetylase
Position: -56
Score: 4.2
Sequence: GTTGATTGCCGCTCTCATC
Locus tag: pRL100328
Name: fhuC
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
Locus tag: pRL100327
Name: fhuD
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: pRL100326
Name: fhuB
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
pRL100328
fhuC
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
pRL100327
fhuD
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
pRL100326
fhuB
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
Position: -55
Score: 4.3
Sequence: CTTGACTTTTCTTTTCTAC
Locus tag: RL3165
Name: PF04773
Funciton: putative exported protein, TonB-dependent receptor protein
Locus tag: RL3166
Name: cyaK
Funciton: Adenylate cyclase (EC 4.6.1.1)
RL3165
PF04773
putative exported protein, TonB-dependent receptor protein
RL3166
cyaK
Adenylate cyclase (EC 4.6.1.1)
Position: -107
Score: 4.6
Sequence: TATGATAAAAACAATCAAC
Position: -82
Score: 4.2
Sequence: CTTTACTCTAAAAATCAAG
Locus tag: RL3693
Name: PF10087
Funciton: hypothetical protein
Locus tag: RL3692
Name: null
Funciton: hypothetical protein
Locus tag: RL3691
Name: PF03992
Funciton: Hypothetical monooxygenase
RL3693
PF10087
hypothetical protein
RL3692
hypothetical protein
RL3691
PF03992
Hypothetical monooxygenase
Position: -65
Score: 4.7
Sequence: CTTGATTCATTAAGTCATA
Locus tag: RL2713
Name: irp6A
Funciton: iron ABC transporter, periplasmic protein
Locus tag: RL2714
Name: irp6B
Funciton: iron ABC transporter, permease protein
Locus tag: RL2715
Name: irp6C
Funciton: iron ABC transporter, ATP-binding protein
RL2713
irp6A
iron ABC transporter, periplasmic protein
RL2714
irp6B
iron ABC transporter, permease protein
RL2715
irp6C
iron ABC transporter, ATP-binding protein
Position: -133
Score: 4.2
Sequence: CTTGACTCCTGTTATCACC
Locus tag: pRL120319
Name: fecI
Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily
pRL120319
fecI
RNA polymerase, sigma-24 subunit, ECF subfamily
Position: -180
Score: 4.8
Sequence: CATGATAGATATATTCAAC
Position: -144
Score: 4.7
Sequence: GTTGACAATGCTACTCATG
Locus tag: RL3522
Name: shmR
Funciton: Outer membrane heme receptor, TonB-dependent
RL3522
shmR
Outer membrane heme receptor, TonB-dependent
Position: -84
Score: 5.2
Sequence: GATGACTAAAATAATCATC
Locus tag: pRL120322
Name: fhuA2
Funciton: TonB-dependent siderophore receptor
Locus tag: pRL120321
Name: fhuF
Funciton: Ferric reductase (1.6.99.14)
pRL120322
fhuA2
TonB-dependent siderophore receptor
pRL120321
fhuF
Ferric reductase (1.6.99.14)
Position: -166
Score: 4.7
Sequence: CTTGACTAGTGTTGTCAGC
Locus tag: RL2583
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RL2582
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RL2581
Name: null
Funciton: hypothetical protein
Locus tag: RL2580
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: RL2579
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RL2578
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: RL2577
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: RL2576
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
RL2583
sufS2
Cysteine desulfurase (EC 2.8.1.7)
RL2582
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
RL2581
hypothetical protein
RL2580
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
RL2579
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
RL2578
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
RL2577
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
RL2576
sufA
Iron binding protein SufA for iron-sulfur cluster assembly
Position: -84
Score: 4.7
Sequence: CATGAGTAGCATTGTCAAC
Position: -48
Score: 4.8
Sequence: GTTGAATATATCTATCATG
Locus tag: RL3523
Name: PF06904
Funciton: extensin-like protein
RL3523
PF06904
extensin-like protein
Position: -129
Score: 4.8
Sequence: TATGAAATATTTAGTCAAG
Position: -79
Score: 4.3
Sequence: CTTGAAATCGGCAGTCAGG
Locus tag: RL4584
Name: fbpA
Funciton: Ferric iron ABC transporter, periplasmic protein
Locus tag: RL4583
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: RL4582
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
RL4584
fbpA
Ferric iron ABC transporter, periplasmic protein
RL4583
fbpB
Ferric iron ABC transporter, permease protein
RL4582
fbpC
Ferric iron ABC transporter, ATP-binding protein
Position: -85
Score: 3.8
Sequence: GCTGAATGCGAATTTCATA
Locus tag: RL0777
Name: rirA
Funciton: Iron-responsive transcriptional repressor, Rrf2 family
RL0777
rirA
Iron-responsive transcriptional repressor, Rrf2 family
Position: -82
Score: 4
Sequence: GTTGATTTGTTTGGTCTTG
Locus tag: pRL120713
Name: eitA
Funciton: iron ABC transporter, periplasmic component
Locus tag: pRL120712
Name: eitB
Funciton: iron ABC transporter, permease component
Locus tag: pRL120711
Name: eitC
Funciton: iron ABC transporter, ATPase component
pRL120713
eitA
iron ABC transporter, periplasmic component
pRL120712
eitB
iron ABC transporter, permease component
pRL120711
eitC
iron ABC transporter, ATPase component
Position: -115
Score: 4.8
Sequence: CTTGACTTTCTTACTCATA
Position: -77
Score: 4.2
Sequence: GGAGACAAATACAGTCAAG
Locus tag: RL3695
Name: null
Funciton: hypothetical protein
RL3695
hypothetical protein
Position: -119
Score: 4
Sequence: CATGACTTCCGATTTCAAT
Locus tag: RL2701
Name: fumC
Funciton: Fumarate hydratase class II (EC 4.2.1.2)
RL2701
fumC
Fumarate hydratase class II (EC 4.2.1.2)
Position: -316
Score: 4.1
Sequence: GAAGAAAAAAATTCTCATC
Locus tag: pRL120315
Name: vbsS
Funciton: Vicibactin biosynthesis, peptide synthetase
Locus tag: pRL120314
Name: vbsO
Funciton: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
pRL120315
vbsS
Vicibactin biosynthesis, peptide synthetase
pRL120314
vbsO
Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
Position: -95
Score: 4.1
Sequence: GTTGACTCCAATTCTCCTG
Locus tag: pRL100325
Name: fhuA3
Funciton: Ferric hydroxamate outer membrane receptor FhuA
pRL100325
fhuA3
Ferric hydroxamate outer membrane receptor FhuA
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