Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RirA in Rhizobium etli CFN 42

Properties
Regulator type: Transcription factor
TF locus tag: RHE_CH00735
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Statistics of regulated genes:
- Genes 41
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 129 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -126
Score: 4.1
Sequence: GATGAGAATTTTTTTCTTC
Locus tag: RHE_PF00459
Name: vbsA
Funciton: Vicibactin synthetase small component, acetyltransferase
Locus tag: RHE_PF00460
Name: vbsD
Funciton: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
Locus tag: RHE_PF00461
Name: vsbL
Funciton: Vicibactin biosynthesis, putative cystathionine beta-lyase
RHE_PF00459
vbsA
Vicibactin synthetase small component, acetyltransferase
RHE_PF00460
vbsD
Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
RHE_PF00461
vsbL
Vicibactin biosynthesis, putative cystathionine beta-lyase
Position: -78
Score: 4.8
Sequence: TATGAGTAAGAAAGTCAAG
Locus tag: RHE_CH03267
Name: hmuP
Funciton: Hemin ABC transporter, hemin uptake protein
Locus tag: RHE_CH03268
Name: hmuS
Funciton: Hemin transport system, degrading protein
Locus tag: RHE_CH03269
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: RHE_CH03270
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
Locus tag: RHE_CH03271
Name: hmuV
Funciton: Hemin ABC transporter, ATPase protein
RHE_CH03267
hmuP
Hemin ABC transporter, hemin uptake protein
RHE_CH03268
hmuS
Hemin transport system, degrading protein
RHE_CH03269
hmuT
Hemin ABC transporter, periplasmic protein
RHE_CH03270
hmuU
Hemin ABC transporter, permease protein
RHE_CH03271
hmuV
Hemin ABC transporter, ATPase protein
Position: -49
Score: 4.2
Sequence: GGTGATAACAGGAGTCAAG
Locus tag: RHE_PF00463
Name: vbsC
Funciton: vicibactin acetylase
Locus tag: RHE_PF00464
Name: fhuD
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: RHE_PF00465
Name: fhuB
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
RHE_PF00463
vbsC
vicibactin acetylase
RHE_PF00464
fhuD
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
RHE_PF00465
fhuB
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
Position: -11
Score: 5.2
Sequence: GTTGACTGCTATTGTCAAG
Locus tag: RHE_PE00160
Name: PF00501
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
RHE_PE00160
PF00501
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -55
Score: 4.4
Sequence: CTTGACTTTTTCACTCTAC
Locus tag: RHE_CH02695
Name: PF04773
Funciton: putative exported protein, TonB-dependent receptor protein
Locus tag: RHE_CH02696
Name: cyaK
Funciton: Adenylate cyclase (EC 4.6.1.1)
RHE_CH02695
PF04773
putative exported protein, TonB-dependent receptor protein
RHE_CH02696
cyaK
Adenylate cyclase (EC 4.6.1.1)
Position: -107
Score: 4
Sequence: TATGATCAAAACAGTCTAC
Position: -82
Score: 4.2
Sequence: CTTTACTCTAAAAATCAAG
Locus tag: RHE_CH03264
Name: PF10087
Funciton: hypothetical protein
Locus tag: RHE_CH03263
Name: null
Funciton: hypothetical protein
Locus tag: RHE_CH03262
Name: PF03992
Funciton: Hypothetical monooxygenase
RHE_CH03264
PF10087
hypothetical protein
RHE_CH03263
hypothetical protein
RHE_CH03262
PF03992
Hypothetical monooxygenase
Position: -118
Score: 4.8
Sequence: CTTGACTTTCTTACTCATA
Locus tag: RHE_CH03266
Name: null
Funciton: hypothetical protein
Locus tag: RHE_CH03265
Name: tonB
Funciton: Ferric siderophore transport system energy transducer
RHE_CH03266
hypothetical protein
RHE_CH03265
tonB
Ferric siderophore transport system energy transducer
Position: -134
Score: 4.2
Sequence: CTTGACTCCTGTTATCACC
Locus tag: RHE_PF00462
Name: fecI
Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily
RHE_PF00462
fecI
RNA polymerase, sigma-24 subunit, ECF subfamily
Position: -179
Score: 4.1
Sequence: CTTGATGGATTTGTTCAAG
Position: -143
Score: 5.1
Sequence: GTTGACAACAGAAGTCATG
Locus tag: RHE_CH03076
Name: shmR
Funciton: Outer membrane heme receptor, TonB-dependent
RHE_CH03076
shmR
Outer membrane heme receptor, TonB-dependent
Position: -84
Score: 4.3
Sequence: GCTGACAAAAATAATCACC
Locus tag: RHE_PF00469
Name: fhuA2
Funciton: TonB-dependent siderophore receptor
Locus tag: RHE_PF00468
Name: fhuF
Funciton: Ferric reductase (1.6.99.14)
RHE_PF00469
fhuA2
TonB-dependent siderophore receptor
RHE_PF00468
fhuF
Ferric reductase (1.6.99.14)
Position: -238
Score: 4.7
Sequence: CTTGACTAACGTTGTCAGC
Locus tag: RHE_CH02254
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RHE_CH02253
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RHE_CH02252
Name: PF01541
Funciton: Excinuclease ABC, C subunit-like
Locus tag: RHE_CH02251
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: RHE_CH02250
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RHE_CH02249
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: RHE_CH02248
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: RHE_CH02247
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
RHE_CH02254
sufS2
Cysteine desulfurase (EC 2.8.1.7)
RHE_CH02253
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
RHE_CH02252
PF01541
Excinuclease ABC, C subunit-like
RHE_CH02251
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
RHE_CH02250
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
RHE_CH02249
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
RHE_CH02248
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
RHE_CH02247
sufA
Iron binding protein SufA for iron-sulfur cluster assembly
Position: -118
Score: 4.1
Sequence: TTTGAAATATCAGGTCAAG
Position: -68
Score: 4.8
Sequence: CTTGAAATAGGTAGTCAAG
Locus tag: RHE_CH04056
Name: fbpA
Funciton: Ferric iron ABC transporter, periplasmic protein
Locus tag: RHE_CH04057
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: RHE_CH04058
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
RHE_CH04056
fbpA
Ferric iron ABC transporter, periplasmic protein
RHE_CH04057
fbpB
Ferric iron ABC transporter, permease protein
RHE_CH04058
fbpC
Ferric iron ABC transporter, ATP-binding protein
Position: -87
Score: 3.8
Sequence: GCTGAATGCGAATTTCATA
Locus tag: RHE_CH00735
Name: rirA
Funciton: Iron-responsive transcriptional repressor, Rrf2 family
RHE_CH00735
rirA
Iron-responsive transcriptional repressor, Rrf2 family
Position: -35
Score: 4.1
Sequence: GTTGATAAATTTGGTCTTG
Locus tag: RHE_PF00269
Name: eitA
Funciton: iron ABC transporter, periplasmic component
Locus tag: RHE_PF00270
Name: eitB
Funciton: iron ABC transporter, permease component
Locus tag: RHE_PF00271
Name: eitC
Funciton: iron ABC transporter, ATPase component
RHE_PF00269
eitA
iron ABC transporter, periplasmic component
RHE_PF00270
eitB
iron ABC transporter, permease component
RHE_PF00271
eitC
iron ABC transporter, ATPase component
Position: -119
Score: 4.1
Sequence: CATGACTGTGATCATCAAT
Locus tag: RHE_CH02383
Name: fumC
Funciton: Fumarate hydratase class II (EC 4.2.1.2)
RHE_CH02383
fumC
Fumarate hydratase class II (EC 4.2.1.2)
Position: -324
Score: 4.1
Sequence: GAAGAAAAAAATTCTCATC
Locus tag: RHE_PF00457
Name: vbsS
Funciton: Vicibactin biosynthesis, peptide synthetase
Locus tag: RHE_PF00456
Name: vbsO
Funciton: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
RHE_PF00457
vbsS
Vicibactin biosynthesis, peptide synthetase
RHE_PF00456
vbsO
Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
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