Regulon of RirA in Rhizobium etli CFN 42
| Regulator type: | Transcription factor |
| TF locus tag: | RHE_CH00735 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Regulog: | RirA - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 41 |
| - Operons | 16 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - Rrf2
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -126
Score: 4.1 Sequence: GATGAGAATTTTTTTCTTC
Locus tag: RHE_PF00459
Name: vbsA Funciton: Vicibactin synthetase small component, acetyltransferase
Locus tag: RHE_PF00460
Name: vbsD Funciton: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
Locus tag: RHE_PF00461
Name: vsbL Funciton: Vicibactin biosynthesis, putative cystathionine beta-lyase |
|||
|
vbsA
|
Vicibactin synthetase small component, acetyltransferase
|
||
|
vbsD
|
Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
|
||
|
vsbL
|
Vicibactin biosynthesis, putative cystathionine beta-lyase
|
||
|
Position: -78
Score: 4.8 Sequence: TATGAGTAAGAAAGTCAAG
Locus tag: RHE_CH03267
Name: hmuP Funciton: Hemin ABC transporter, hemin uptake protein
Locus tag: RHE_CH03268
Name: hmuS Funciton: Hemin transport system, degrading protein
Locus tag: RHE_CH03269
Name: hmuT Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: RHE_CH03270
Name: hmuU Funciton: Hemin ABC transporter, permease protein
Locus tag: RHE_CH03271
Name: hmuV Funciton: Hemin ABC transporter, ATPase protein |
|||
|
hmuP
|
Hemin ABC transporter, hemin uptake protein
|
||
|
hmuS
|
Hemin transport system, degrading protein
|
||
|
hmuT
|
Hemin ABC transporter, periplasmic protein
|
||
|
hmuU
|
Hemin ABC transporter, permease protein
|
||
|
hmuV
|
Hemin ABC transporter, ATPase protein
|
||
|
Position: -49
Score: 4.2 Sequence: GGTGATAACAGGAGTCAAG
Locus tag: RHE_PF00463
Name: vbsC Funciton: vicibactin acetylase
Locus tag: RHE_PF00464
Name: fhuD Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: RHE_PF00465
Name: fhuB Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB |
|||
|
vbsC
|
vicibactin acetylase
|
||
|
fhuD
|
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
|
||
|
fhuB
|
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
|
||
|
Position: -11
Score: 5.2 Sequence: GTTGACTGCTATTGTCAAG
Locus tag: RHE_PE00160
Name: PF00501 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
PF00501
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -55
Score: 4.4 Sequence: CTTGACTTTTTCACTCTAC
Locus tag: RHE_CH02695
Name: PF04773 Funciton: putative exported protein, TonB-dependent receptor protein
Locus tag: RHE_CH02696
Name: cyaK Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
PF04773
|
putative exported protein, TonB-dependent receptor protein
|
||
|
cyaK
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -107
Score: 4 Sequence: TATGATCAAAACAGTCTAC
Position: -82
Score: 4.2 Sequence: CTTTACTCTAAAAATCAAG
Locus tag: RHE_CH03264
Name: PF10087 Funciton: hypothetical protein
Locus tag: RHE_CH03263
Name: null Funciton: hypothetical protein
Locus tag: RHE_CH03262
Name: PF03992 Funciton: Hypothetical monooxygenase |
|||
|
PF10087
|
hypothetical protein
|
||
|
hypothetical protein
|
|||
|
PF03992
|
Hypothetical monooxygenase
|
||
|
Position: -118
Score: 4.8 Sequence: CTTGACTTTCTTACTCATA
Locus tag: RHE_CH03266
Name: null Funciton: hypothetical protein
Locus tag: RHE_CH03265
Name: tonB Funciton: Ferric siderophore transport system energy transducer |
|||
|
hypothetical protein
|
|||
|
tonB
|
Ferric siderophore transport system energy transducer
|
||
|
Position: -134
Score: 4.2 Sequence: CTTGACTCCTGTTATCACC
Locus tag: RHE_PF00462
Name: fecI Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily |
|||
|
fecI
|
RNA polymerase, sigma-24 subunit, ECF subfamily
|
||
|
Position: -179
Score: 4.1 Sequence: CTTGATGGATTTGTTCAAG
Position: -143
Score: 5.1 Sequence: GTTGACAACAGAAGTCATG
Locus tag: RHE_CH03076
Name: shmR Funciton: Outer membrane heme receptor, TonB-dependent |
|||
|
shmR
|
Outer membrane heme receptor, TonB-dependent
|
||
|
Position: -84
Score: 4.3 Sequence: GCTGACAAAAATAATCACC
Locus tag: RHE_PF00469
Name: fhuA2 Funciton: TonB-dependent siderophore receptor
Locus tag: RHE_PF00468
Name: fhuF Funciton: Ferric reductase (1.6.99.14) |
|||
|
fhuA2
|
TonB-dependent siderophore receptor
|
||
|
fhuF
|
Ferric reductase (1.6.99.14)
|
||
|
Position: -238
Score: 4.7 Sequence: CTTGACTAACGTTGTCAGC
Locus tag: RHE_CH02254
Name: sufS2 Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RHE_CH02253
Name: sufB Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RHE_CH02252
Name: PF01541 Funciton: Excinuclease ABC, C subunit-like
Locus tag: RHE_CH02251
Name: sufC Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: RHE_CH02250
Name: sufD Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RHE_CH02249
Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: RHE_CH02248
Name: PF01883 Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: RHE_CH02247
Name: sufA Funciton: Iron binding protein SufA for iron-sulfur cluster assembly |
|||
|
sufS2
|
Cysteine desulfurase (EC 2.8.1.7)
|
||
|
sufB
|
ABC transporter involved in Fe-S cluster assembly, permease protein
|
||
|
PF01541
|
Excinuclease ABC, C subunit-like
|
||
|
sufC
|
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
|
||
|
sufD
|
ABC transporter involved in Fe-S cluster assembly, permease protein
|
||
|
sufS
|
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
|
||
|
PF01883
|
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
|
||
|
sufA
|
Iron binding protein SufA for iron-sulfur cluster assembly
|
||
|
Position: -118
Score: 4.1 Sequence: TTTGAAATATCAGGTCAAG
Position: -68
Score: 4.8 Sequence: CTTGAAATAGGTAGTCAAG
Locus tag: RHE_CH04056
Name: fbpA Funciton: Ferric iron ABC transporter, periplasmic protein
Locus tag: RHE_CH04057
Name: fbpB Funciton: Ferric iron ABC transporter, permease protein
Locus tag: RHE_CH04058
Name: fbpC Funciton: Ferric iron ABC transporter, ATP-binding protein |
|||
|
fbpA
|
Ferric iron ABC transporter, periplasmic protein
|
||
|
fbpB
|
Ferric iron ABC transporter, permease protein
|
||
|
fbpC
|
Ferric iron ABC transporter, ATP-binding protein
|
||
|
Position: -87
Score: 3.8 Sequence: GCTGAATGCGAATTTCATA
Locus tag: RHE_CH00735
Name: rirA Funciton: Iron-responsive transcriptional repressor, Rrf2 family |
|||
|
rirA
|
Iron-responsive transcriptional repressor, Rrf2 family
|
||
|
Position: -35
Score: 4.1 Sequence: GTTGATAAATTTGGTCTTG
Locus tag: RHE_PF00269
Name: eitA Funciton: iron ABC transporter, periplasmic component
Locus tag: RHE_PF00270
Name: eitB Funciton: iron ABC transporter, permease component
Locus tag: RHE_PF00271
Name: eitC Funciton: iron ABC transporter, ATPase component |
|||
|
eitA
|
iron ABC transporter, periplasmic component
|
||
|
eitB
|
iron ABC transporter, permease component
|
||
|
eitC
|
iron ABC transporter, ATPase component
|
||
|
Position: -119
Score: 4.1 Sequence: CATGACTGTGATCATCAAT
Locus tag: RHE_CH02383
Name: fumC Funciton: Fumarate hydratase class II (EC 4.2.1.2) |
|||
|
fumC
|
Fumarate hydratase class II (EC 4.2.1.2)
|
||
|
Position: -324
Score: 4.1 Sequence: GAAGAAAAAAATTCTCATC
Locus tag: RHE_PF00457
Name: vbsS Funciton: Vicibactin biosynthesis, peptide synthetase
Locus tag: RHE_PF00456
Name: vbsO Funciton: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein |
|||
|
vbsS
|
Vicibactin biosynthesis, peptide synthetase
|
||
|
vbsO
|
Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |