Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RirA in Rhizobium etli CFN 42

Properties
Regulator type: Transcription factor
TF locus tag: RHE_CH00735
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Statistics of regulated genes:
- Genes 41
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 129 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -126
Score: 4.1
Sequence: GATGAGAATTTTTTTCTTC
Locus tag: RHE_PF00459
Name: vbsA
Funciton: Vicibactin synthetase small component, acetyltransferase
Locus tag: RHE_PF00460
Name: vbsD
Funciton: Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
Locus tag: RHE_PF00461
Name: vsbL
Funciton: Vicibactin biosynthesis, putative cystathionine beta-lyase
vbsA
Vicibactin synthetase small component, acetyltransferase
vbsD
Vicibactin extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps
vsbL
Vicibactin biosynthesis, putative cystathionine beta-lyase

Position: -78
Score: 4.8
Sequence: TATGAGTAAGAAAGTCAAG
Locus tag: RHE_CH03267
Name: hmuP
Funciton: Hemin ABC transporter, hemin uptake protein
Locus tag: RHE_CH03268
Name: hmuS
Funciton: Hemin transport system, degrading protein
Locus tag: RHE_CH03269
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: RHE_CH03270
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
Locus tag: RHE_CH03271
Name: hmuV
Funciton: Hemin ABC transporter, ATPase protein
hmuP
Hemin ABC transporter, hemin uptake protein
hmuS
Hemin transport system, degrading protein
hmuT
Hemin ABC transporter, periplasmic protein
hmuU
Hemin ABC transporter, permease protein
hmuV
Hemin ABC transporter, ATPase protein

Position: -49
Score: 4.2
Sequence: GGTGATAACAGGAGTCAAG
Locus tag: RHE_PF00463
Name: vbsC
Funciton: vicibactin acetylase
Locus tag: RHE_PF00464
Name: fhuD
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: RHE_PF00465
Name: fhuB
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
vbsC
vicibactin acetylase
fhuD
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
fhuB
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB

Position: -11
Score: 5.2
Sequence: GTTGACTGCTATTGTCAAG
Locus tag: RHE_PE00160
Name: PF00501
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
PF00501
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -55
Score: 4.4
Sequence: CTTGACTTTTTCACTCTAC
Locus tag: RHE_CH02695
Name: PF04773
Funciton: putative exported protein, TonB-dependent receptor protein
Locus tag: RHE_CH02696
Name: cyaK
Funciton: Adenylate cyclase (EC 4.6.1.1)
PF04773
putative exported protein, TonB-dependent receptor protein
cyaK
Adenylate cyclase (EC 4.6.1.1)

Position: -107
Score: 4
Sequence: TATGATCAAAACAGTCTAC
Position: -82
Score: 4.2
Sequence: CTTTACTCTAAAAATCAAG
Locus tag: RHE_CH03264
Name: PF10087
Funciton: hypothetical protein
Locus tag: RHE_CH03263
Name: null
Funciton: hypothetical protein
Locus tag: RHE_CH03262
Name: PF03992
Funciton: Hypothetical monooxygenase
PF10087
hypothetical protein
hypothetical protein
PF03992
Hypothetical monooxygenase

Position: -118
Score: 4.8
Sequence: CTTGACTTTCTTACTCATA
Locus tag: RHE_CH03266
Name: null
Funciton: hypothetical protein
Locus tag: RHE_CH03265
Name: tonB
Funciton: Ferric siderophore transport system energy transducer
hypothetical protein
tonB
Ferric siderophore transport system energy transducer

Position: -134
Score: 4.2
Sequence: CTTGACTCCTGTTATCACC
Locus tag: RHE_PF00462
Name: fecI
Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily
fecI
RNA polymerase, sigma-24 subunit, ECF subfamily

Position: -179
Score: 4.1
Sequence: CTTGATGGATTTGTTCAAG
Position: -143
Score: 5.1
Sequence: GTTGACAACAGAAGTCATG
Locus tag: RHE_CH03076
Name: shmR
Funciton: Outer membrane heme receptor, TonB-dependent
shmR
Outer membrane heme receptor, TonB-dependent

Position: -84
Score: 4.3
Sequence: GCTGACAAAAATAATCACC
Locus tag: RHE_PF00469
Name: fhuA2
Funciton: TonB-dependent siderophore receptor
Locus tag: RHE_PF00468
Name: fhuF
Funciton: Ferric reductase (1.6.99.14)
fhuA2
TonB-dependent siderophore receptor
fhuF
Ferric reductase (1.6.99.14)

Position: -238
Score: 4.7
Sequence: CTTGACTAACGTTGTCAGC
Locus tag: RHE_CH02254
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RHE_CH02253
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RHE_CH02252
Name: PF01541
Funciton: Excinuclease ABC, C subunit-like
Locus tag: RHE_CH02251
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: RHE_CH02250
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RHE_CH02249
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: RHE_CH02248
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: RHE_CH02247
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
sufS2
Cysteine desulfurase (EC 2.8.1.7)
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
PF01541
Excinuclease ABC, C subunit-like
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
sufA
Iron binding protein SufA for iron-sulfur cluster assembly

Position: -118
Score: 4.1
Sequence: TTTGAAATATCAGGTCAAG
Position: -68
Score: 4.8
Sequence: CTTGAAATAGGTAGTCAAG
Locus tag: RHE_CH04056
Name: fbpA
Funciton: Ferric iron ABC transporter, periplasmic protein
Locus tag: RHE_CH04057
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: RHE_CH04058
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
fbpA
Ferric iron ABC transporter, periplasmic protein
fbpB
Ferric iron ABC transporter, permease protein
fbpC
Ferric iron ABC transporter, ATP-binding protein

Position: -87
Score: 3.8
Sequence: GCTGAATGCGAATTTCATA
Locus tag: RHE_CH00735
Name: rirA
Funciton: Iron-responsive transcriptional repressor, Rrf2 family
rirA
Iron-responsive transcriptional repressor, Rrf2 family

Position: -35
Score: 4.1
Sequence: GTTGATAAATTTGGTCTTG
Locus tag: RHE_PF00269
Name: eitA
Funciton: iron ABC transporter, periplasmic component
Locus tag: RHE_PF00270
Name: eitB
Funciton: iron ABC transporter, permease component
Locus tag: RHE_PF00271
Name: eitC
Funciton: iron ABC transporter, ATPase component
eitA
iron ABC transporter, periplasmic component
eitB
iron ABC transporter, permease component
eitC
iron ABC transporter, ATPase component

Position: -119
Score: 4.1
Sequence: CATGACTGTGATCATCAAT
Locus tag: RHE_CH02383
Name: fumC
Funciton: Fumarate hydratase class II (EC 4.2.1.2)
fumC
Fumarate hydratase class II (EC 4.2.1.2)

Position: -324
Score: 4.1
Sequence: GAAGAAAAAAATTCTCATC
Locus tag: RHE_PF00457
Name: vbsS
Funciton: Vicibactin biosynthesis, peptide synthetase
Locus tag: RHE_PF00456
Name: vbsO
Funciton: Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
vbsS
Vicibactin biosynthesis, peptide synthetase
vbsO
Vicibactin biosynthesis, L-lysine 6-monooxygenase protein
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