Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RirA in Sinorhizobium meliloti 1021

Properties
Regulator type: Transcription factor
TF locus tag: SMc00785
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: RirA - Rhizobiales
Statistics of regulated genes:
- Genes 58
- Operons 23
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 129 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -116
Score: 4
Sequence: AATGAGAATACGAGTCAAC
Locus tag: SMa1749
Name: araX1
Funciton: Siderophore uptake regulator, AraC family
SMa1749
araX1
Siderophore uptake regulator, AraC family
Position: -64
Score: 4.9
Sequence: CCTGAATGCAATAGTCAAG
Locus tag: SMc02889
Name: rhtX2
Funciton: ferrisiderophore permease, MFS family
Locus tag: SMc02890
Name: viuA
Funciton: Ferrisiderophore TonB-dependent outer membrane receptor
SMc02889
rhtX2
ferrisiderophore permease, MFS family
SMc02890
viuA
Ferrisiderophore TonB-dependent outer membrane receptor
Position: -79
Score: 5
Sequence: CATGACTTAAATAGTCTTG
Locus tag: SMa2414
Name: rhtA
Funciton: Rhizobactin receptor precursor RhtA
Locus tag: SMa2339
Name: vbsA
Funciton: Vicibactin synthetase small component, acetyltransferase
SMa2414
rhtA
Rhizobactin receptor precursor RhtA
SMa2339
vbsA
Vicibactin synthetase small component, acetyltransferase
Position: -209
Score: 4.1
Sequence: CATGAAAGCTTCGCTCAAC
Locus tag: SMa1746
Name: fepB
Funciton: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: SMa1745
Name: fepD
Funciton: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease component FhuB
Locus tag: SMa1742
Name: fepG
Funciton: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease protein FhuG
Locus tag: SMa1741
Name: fepC
Funciton: Ferrienterobactin ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
Locus tag: SMa1740
Name: mxcB
Funciton: siderophore-interacting protein
SMa1746
fepB
Ferrienterobactin ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
SMa1745
fepD
Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease component FhuB
SMa1742
fepG
Ferrienterobactin ABC transporter (TC 3.A.1.14.3), permease protein FhuG
SMa1741
fepC
Ferrienterobactin ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
SMa1740
mxcB
siderophore-interacting protein
Position: -108
Score: 5
Sequence: CAAGACTATTTAAGTCATG
Locus tag: SMa2412
Name: rhrA
Funciton: transcriptional activator of rhizobactin biosynthesis and transport
SMa2412
rhrA
transcriptional activator of rhizobactin biosynthesis and transport
Position: -59
Score: 4.6
Sequence: GATGACGGCAACACTCATG
Position: -10
Score: 3.5
Sequence: GGAGATTTCTATGCTCATG
Locus tag: SMa2337
Name: rhtX
Funciton: rhizobactin siderophore transporter, MFS family
Locus tag: SMa2400
Name: rhbA
Funciton: Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)
Locus tag: SMa2402
Name: rhbB
Funciton: Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase
Locus tag: SMa2404
Name: rhbC
Funciton: Siderophore synthetase superfamily, group A
Locus tag: SMa2406
Name: rhbD
Funciton: Siderophore synthetase small component, acetyltransferase
Locus tag: SMa2408
Name: rhbE
Funciton: Siderophore biosynthesis protein, monooxygenase
Locus tag: SMa2410
Name: rhbF
Funciton: Siderophore synthetase superfamily, group C @ Siderophore synthetase component, ligase
SMa2337
rhtX
rhizobactin siderophore transporter, MFS family
SMa2400
rhbA
Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)
SMa2402
rhbB
Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase
SMa2404
rhbC
Siderophore synthetase superfamily, group A
SMa2406
rhbD
Siderophore synthetase small component, acetyltransferase
SMa2408
rhbE
Siderophore biosynthesis protein, monooxygenase
SMa2410
rhbF
Siderophore synthetase superfamily, group C @ Siderophore synthetase component, ligase
Position: -53
Score: 4.4
Sequence: CTTGACGATCAAAGTCAGC
Locus tag: SMc00592
Name: PF00501
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SMc00592
PF00501
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -165
Score: 4.8
Sequence: CTTGACTAAACCAGTCAGC
Locus tag: SMc00529
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: SMc00530
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: SMc00531
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: SMc00532
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: SMc00533
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: SMc00302
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: SMc00301
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
SMc00529
sufS2
Cysteine desulfurase (EC 2.8.1.7)
SMc00530
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
SMc00531
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
SMc00532
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
SMc00533
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
SMc00302
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
SMc00301
sufA
Iron binding protein SufA for iron-sulfur cluster assembly
Position: -59
Score: 4.7
Sequence: GTTGACCGGTAAAGTCATG
Locus tag: SMb21432
Name: irp6A
Funciton: iron ABC transporter, periplasmic protein
Locus tag: SMb21431
Name: irp6A
Funciton: iron ABC transporter, periplasmic protein
Locus tag: SMb21430
Name: irp6B
Funciton: iron ABC transporter, permease protein
Locus tag: SMb21429
Name: irp6C
Funciton: iron ABC transporter, ATP-binding protein
SMb21432
irp6A
iron ABC transporter, periplasmic protein
SMb21431
irp6A
iron ABC transporter, periplasmic protein
SMb21430
irp6B
iron ABC transporter, permease protein
SMb21429
irp6C
iron ABC transporter, ATP-binding protein
Position: -170
Score: 4.8
Sequence: CATGATTATCTCAATCAAC
Locus tag: SMc04203
Name: fecI
Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily
Locus tag: SMc04204
Name: fecR
Funciton: Iron siderophore sensor kinase
SMc04203
fecI
RNA polymerase, sigma-24 subunit, ECF subfamily
SMc04204
fecR
Iron siderophore sensor kinase
Position: -141
Score: 4.3
Sequence: ATTGACAATCACACTCATG
Position: -54
Score: 3.9
Sequence: CTTGAGTTCGCCGCTCAAC
Locus tag: SMc02726
Name: shmR
Funciton: Outer membrane heme receptor, TonB-dependent
SMc02726
shmR
Outer membrane heme receptor, TonB-dependent
Position: -181
Score: 4.3
Sequence: CTTGATTATTGTACTCCAC
Locus tag: SMc02085
Name: exbB
Funciton: Ferric siderophore transport system, proton channel protein ExbB
Locus tag: SMc02084
Name: exbD
Funciton: Ferric siderophore transport system, proton channel protein ExbD
SMc02085
exbB
Ferric siderophore transport system, proton channel protein ExbB
SMc02084
exbD
Ferric siderophore transport system, proton channel protein ExbD
Position: -93
Score: 5.4
Sequence: CATGACTTAAAAAGTCATG
Position: -50
Score: 3.9
Sequence: CATGAGTGATTAGCTCACC
Locus tag: SMc01657
Name: fhuA2
Funciton: TonB-dependent siderophore receptor
Locus tag: SMc01658
Name: fhuF
Funciton: Ferric reductase (1.6.99.14)
Locus tag: SMc01659
Name: PF01497
Funciton: Putative periplasmic substrate-binding transport protein, FepB-like
SMc01657
fhuA2
TonB-dependent siderophore receptor
SMc01658
fhuF
Ferric reductase (1.6.99.14)
SMc01659
PF01497
Putative periplasmic substrate-binding transport protein, FepB-like
Position: -133
Score: 4.9
Sequence: TATGAGTAATGAAGTCAAG
Locus tag: SMc01747
Name: hmuP
Funciton: Hemin ABC transporter, hemin uptake protein
Locus tag: SMc01513
Name: hmuS
Funciton: Hemin transport system, degrading protein
Locus tag: SMc01512
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic protein
Locus tag: SMc01511
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
Locus tag: SMc01510
Name: hmuV
Funciton: Hemin ABC transporter, ATPase protein
SMc01747
hmuP
Hemin ABC transporter, hemin uptake protein
SMc01513
hmuS
Hemin transport system, degrading protein
SMc01512
hmuT
Hemin ABC transporter, periplasmic protein
SMc01511
hmuU
Hemin ABC transporter, permease protein
SMc01510
hmuV
Hemin ABC transporter, ATPase protein
Position: -47
Score: 4
Sequence: TATGATTGACTAAGTTAAG
Locus tag: SMc00784
Name: fbpA
Funciton: Ferric iron ABC transporter, periplasmic protein
SMc00784
fbpA
Ferric iron ABC transporter, periplasmic protein
Position: -88
Score: 3.9
Sequence: GTTGAGCGGCGAACTCAAG
Position: -1
Score: 4.3
Sequence: CATGAGTGTGATTGTCAAT
Locus tag: SMc02727
Name: PF06904
Funciton: extensin-like protein
SMc02727
PF06904
extensin-like protein
Position: -182
Score: 4.6
Sequence: GATGAGTTCTATATTCATA
Locus tag: SMc00045
Name: cycF
Funciton: Cytochrome c-556
Locus tag: SMc00086
Name: cycG
Funciton: diheme cytochrome c-553
SMc00045
cycF
Cytochrome c-556
SMc00086
cycG
diheme cytochrome c-553
Position: -68
Score: 3.9
Sequence: GTTGACGGCAAATGTCCTC
Locus tag: SMc03787
Name: bfd
Funciton: Bacterioferritin ferredoxin
Locus tag: SMc03786
Name: bfr
Funciton: bacterioferritin (Cytochrome B-1) (Cytochrome B-557)
SMc03787
bfd
Bacterioferritin ferredoxin
SMc03786
bfr
bacterioferritin (Cytochrome B-1) (Cytochrome B-557)
Position: -171
Score: 4
Sequence: CTTAACTTAGTCAATCATA
Locus tag: SMc00785
Name: rirA
Funciton: Iron-responsive transcriptional repressor, Rrf2 family
SMc00785
rirA
Iron-responsive transcriptional repressor, Rrf2 family
Position: -85
Score: 4.1
Sequence: GTTGATCTAGACACTCATC
Position: -61
Score: 4.1
Sequence: GTTGACAGTACCGGTCACG
Locus tag: SMc01611
Name: fhuA1
Funciton: TonB-dependent siderophore receptor
SMc01611
fhuA1
TonB-dependent siderophore receptor
Position: -115
Score: 4.9
Sequence: CTTGACTTCATTACTCATA
Locus tag: SMc01514
Name: null
Funciton: hypothetical protein
Locus tag: SMc01515
Name: tonB
Funciton: Ferric siderophore transport system energy transducer
Locus tag: SMc01516
Name: PF10087
Funciton: hypothetical protein
Locus tag: SMc01517
Name: null
Funciton: hypothetical protein
Locus tag: SMc01518
Name: PF03992
Funciton: Hypothetical monooxygenase
SMc01514
hypothetical protein
SMc01515
tonB
Ferric siderophore transport system energy transducer
SMc01516
PF10087
hypothetical protein
SMc01517
hypothetical protein
SMc01518
PF03992
Hypothetical monooxygenase
Position: -119
Score: 4.3
Sequence: TATGACATCCGTTTTCAAG
Locus tag: SMc04205
Name: hmuR
Funciton: TonB-dependent iron siderophore receptor protein
SMc04205
hmuR
TonB-dependent iron siderophore receptor protein
Position: -102
Score: 4.1
Sequence: GTTGAGCGAAGCTTTCATG
Locus tag: SMa1747
Name: fhuA3
Funciton: Ferric hydroxamate outer membrane receptor FhuA
SMa1747
fhuA3
Ferric hydroxamate outer membrane receptor FhuA
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise