Regulon of RirA in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type:	Transcription factor
TF locus tag:	Atu0201
Regulator family:	Rrf2
Regulation mode:	repressor
Biological process:	Iron homeostasis
Effector:	Iron ion, (Fe2+)
Regulog:	RirA - Rhizobiales
Statistics of regulated genes:
- Genes	26
- Operons	13
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 129 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - Rrf2
By effector - Iron ion, (Fe2+)
By pathway - Iron homeostasis

Regulated operons
	Locus Tag	Name	Function
Position: -82 Score: 4.1 Sequence: CCTGATGTAAACACTCATC Locus tag: Atu0409 Name: fhuA1 Funciton: TonB-dependent siderophore receptor
	Atu0409	fhuA1	TonB-dependent siderophore receptor
Position: -118 Score: 3.7 Sequence: CATGAGGAAAATCATCACC Position: -93 Score: 4 Sequence: CTTTACTCCAAAACTCATC Locus tag: Atu2383 Name: PF10087 Funciton: hypothetical protein Locus tag: Atu2382 Name: null Funciton: hypothetical protein
	Atu2383	PF10087	hypothetical protein
	Atu2382		hypothetical protein
Position: -157 Score: 4.3 Sequence: CTTGACGAACTGTGTCATC Locus tag: Atu1825 Name: sufS2 Funciton: Cysteine desulfurase (EC 2.8.1.7) Locus tag: Atu1824 Name: sufB Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein Locus tag: Atu1823 Name: sufC Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein Locus tag: Atu1822 Name: sufD Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein Locus tag: Atu1821 Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily Locus tag: Atu1820 Name: PF01883 Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly Locus tag: Atu1819 Name: sufA Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
	Atu1825	sufS2	Cysteine desulfurase (EC 2.8.1.7)
	Atu1824	sufB	ABC transporter involved in Fe-S cluster assembly, permease protein
	Atu1823	sufC	ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
	Atu1822	sufD	ABC transporter involved in Fe-S cluster assembly, permease protein
	Atu1821	sufS	Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
	Atu1820	PF01883	PaaD-like protein (DUF59) involved in Fe-S cluster assembly
	Atu1819	sufA	Iron binding protein SufA for iron-sulfur cluster assembly
Position: -62 Score: 4.8 Sequence: CTTGACTAGTACAGTCAGA Locus tag: Atu3391 Name: irp6A Funciton: iron ABC transporter, periplasmic protein Locus tag: Atu3390 Name: irp6A Funciton: iron ABC transporter, periplasmic protein Locus tag: Atu3389 Name: irp6B Funciton: iron ABC transporter, permease protein Locus tag: Atu3388 Name: irp6C Funciton: iron ABC transporter, ATP-binding protein
	Atu3391	irp6A	iron ABC transporter, periplasmic protein
	Atu3390	irp6A	iron ABC transporter, periplasmic protein
	Atu3389	irp6B	iron ABC transporter, permease protein
	Atu3388	irp6C	iron ABC transporter, ATP-binding protein
Position: -131 Score: 5.2 Sequence: CTTGATAATAATTGTCATG Locus tag: Atu3387 Name: fecI Funciton: RNA polymerase, sigma-24 subunit, ECF subfamily Locus tag: Atu3386 Name: fecR Funciton: Iron siderophore sensor kinase
	Atu3387	fecI	RNA polymerase, sigma-24 subunit, ECF subfamily
	Atu3386	fecR	Iron siderophore sensor kinase
Position: -164 Score: 4.8 Sequence: CATGATTCAAAAAGTCATA Position: -137 Score: 4.6 Sequence: GTTGACAGTGATCGTCATG Locus tag: Atu2287 Name: shmR Funciton: Outer membrane heme receptor, TonB-dependent
	Atu2287	shmR	Outer membrane heme receptor, TonB-dependent
Position: -66 Score: 4.3 Sequence: CTTGATTTGCGCCGTCATG Locus tag: Atu0407 Name: fbpA Funciton: Ferric iron ABC transporter, periplasmic protein Locus tag: Atu0408 Name: fbpB Funciton: Ferric iron ABC transporter, permease protein
	Atu0407	fbpA	Ferric iron ABC transporter, periplasmic protein
	Atu0408	fbpB	Ferric iron ABC transporter, permease protein
Position: -31 Score: 4.7 Sequence: CATGAACAAACAAGTCAAG Locus tag: Atu0202 Name: fbpA Funciton: Ferric iron ABC transporter, periplasmic protein
	Atu0202	fbpA	Ferric iron ABC transporter, periplasmic protein
Position: -191 Score: 3.9 Sequence: GAAGACATGACTGGTCAAG Locus tag: Atu2288 Name: PF06904 Funciton: extensin-like protein
	Atu2288	PF06904	extensin-like protein
Position: -149 Score: 3.9 Sequence: CTAGACTTCTGTTTTCACG Locus tag: Atu0881 Name: cycF Funciton: Cytochrome c-556 Locus tag: Atu0882 Name: cycG Funciton: diheme cytochrome c-553
	Atu0881	cycF	Cytochrome c-556
	Atu0882	cycG	diheme cytochrome c-553
Position: -322 Score: 4.5 Sequence: CtTGACatTTActGTCcTG Locus tag: Atu2771 Name: bfr Funciton: bacterioferritin (Cytochrome B-1) (Cytochrome B-557)
	Atu2771	bfr	bacterioferritin (Cytochrome B-1) (Cytochrome B-557)
Position: -146 Score: 4.7 Sequence: CTTGACTTGTTTGTTCATG Locus tag: Atu0201 Name: rirA Funciton: Iron-responsive transcriptional repressor, Rrf2 family
	Atu0201	rirA	Iron-responsive transcriptional repressor, Rrf2 family
Position: -56 Score: 4.5 Sequence: GTTGAGTAATCCGGTCAAG Locus tag: Atu3385 Name: hmuR Funciton: TonB-dependent iron siderophore receptor protein
	Atu3385	hmuR	TonB-dependent iron siderophore receptor protein

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of RirA in Agrobacterium tumefaciens str. C58 (Cereon)

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --