Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_a01260
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhizobiales
Statistics of regulated genes:
- Genes 28
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 130 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -273
Score: 4.9
Sequence: TGTCGGAAGGACGACA
Position: -245
Score: 5.1
Sequence: TGTCGGCTCTCTGACA
Locus tag: NGR_a01200
Name: ahpC1
Funciton: Alkyl hydroperoxide reductase protein (EC 1.6.4.-)
NGR_a01200
ahpC1
Alkyl hydroperoxide reductase protein (EC 1.6.4.-)
Position: -162
Score: 4.8
Sequence: TGTCATGAAGCCGACA
Locus tag: NGR_a01220
Name: fixB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: NGR_a01230
Name: fixA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: NGR_a01240
Name: fixC
Funciton: Electron-transferring-flavoprotein dehydrogenase
Locus tag: NGR_a01250
Name: fixX
Funciton: Ferredoxin-like protein, FixX
Locus tag: NGR_a01260
Name: nifA
Funciton: Nitrogen fixation transcriptional regulator NifA, Fis family
NGR_a01220
fixB
Electron transfer flavoprotein, beta subunit
NGR_a01230
fixA
Electron transfer flavoprotein, alpha subunit
NGR_a01240
fixC
Electron-transferring-flavoprotein dehydrogenase
NGR_a01250
fixX
Ferredoxin-like protein, FixX
NGR_a01260
nifA
Nitrogen fixation transcriptional regulator NifA, Fis family
Position: -114
Score: 4.1
Sequence: TGTCGTACAAACGACA
Locus tag: NGR_a01210
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
NGR_a01210
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
Position: -183
Score: 5.3
Sequence: TGTCGCGTCCGCGACA
Locus tag: NGR_a02700
Name: cpxP
Funciton: Cytochrome P450 protein CpxP
Locus tag: NGR_a02710
Name: cpxR
Funciton: Putative cytochrome P450 hydroxylase
NGR_a02700
cpxP
Cytochrome P450 protein CpxP
NGR_a02710
cpxR
Putative cytochrome P450 hydroxylase
Position: -282
Score: 3.8
Sequence: TCGCGCGAGGGCGACA
Locus tag: NGR_a00930
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: NGR_a00940
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
NGR_a00930
nifS
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
NGR_a00940
nifW
Nitrogenase stabilizing/protective protein NifW
Position: -208
Score: 5.3
Sequence: TGTCGGCTCCGCGACA
Locus tag: NGR_a00890
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: NGR_a00880
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: NGR_a00870
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
NGR_a00890
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
NGR_a00880
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
NGR_a00870
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Position: -211
Score: 5.3
Sequence: TGTCGGCTCCGCGACA
Locus tag: NGR_a01130
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: NGR_a01120
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: NGR_a01110
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: NGR_a01100
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: NGR_a01090
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: NGR_a01080
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: NGR_a01070
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
NGR_a01130
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
NGR_a01120
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
NGR_a01110
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
NGR_a01100
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
NGR_a01090
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
NGR_a01080
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
NGR_a01070
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
Position: -228
Score: 5.1
Sequence: TGTCAGAGAGCCGACA
Position: -200
Score: 4.9
Sequence: TGTCGTCCTTCCGACA
Locus tag: NGR_a01190
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
NGR_a01190
nifQ
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
Position: -144
Score: 5.2
Sequence: TGTCGCGAATTCGACA
Locus tag: NGR_a01270
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: NGR_a01280
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: NGR_a01290
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: NGR_a01300
Name: nifT
Funciton: Nitrogen fixation protein NifT
NGR_a01270
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NGR_a01280
fdxN
4Fe-4S ferredoxin, nitrogenase-associated
NGR_a01290
nifZ
Nitrogen fixation protein NifZ
NGR_a01300
nifT
Nitrogen fixation protein NifT
Position: -55
Score: 4
Sequence: CGTCGTGCATCCAACA
Locus tag: NGR_c29850
Name: modB
Funciton: Molybdate ABC transporter, permease protein
Locus tag: NGR_c29860
Name: modC
Funciton: Molybdate ABC transporter, ATP-binding protein
NGR_c29850
modB
Molybdate ABC transporter, permease protein
NGR_c29860
modC
Molybdate ABC transporter, ATP-binding protein
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