Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator NifA in Rhizobiales

Properties
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhizobiales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Azorhizobium caulinodans ORS 571
AZC_1051 ahpC -161 5.6 TGTCGGAAAGCCGACA
AZC_1051 ahpC -206 4.3 CGGCGGGTTCCCGACA
AZC_1041 nifH -281 4.7 TGTCGCGTTTGAAACA
AZC_3414 nifB -138 5.1 TGTTGGCAACGCGACA
AZC_3442 cheY -192 4.8 TGTCTCGAACCTGACA
AZC_3442 cheY -163 4.3 TGTTGGAAAGGAAACA
AZC_0303 fer2 -67 3.8 TGTGGGGCCTCCGGCA
AZC_1052 xdhC -190 4.3 TGTCGGGAACCCGCCG
AZC_1043 fdxN -142 5.2 TGTCGGGGGCGCGACA
AZC_1052 xdhC -235 5.6 TGTCGGCTTTCCGACA
AZC_3437 bolA -128 5.4 TGTCGCATGTGCGACA
AZC_1043 fdxN -160 5.3 TGTCGCAGTCGCGACA
AZC_3409 iscN -116 4.3 GGTCTGCTTCGCGACA
AZC_3409 iscN -134 5.5 TGTCGCAAAGGCGACA
AZC_3447 fixB -113 4.2 TGTGGCATGCCAGACA
AZC_3447 fixB -179 5 TGTCGCATTCCCGACG
AZC_3437 bolA -121 4.1 TGTGCGACATGCGACA
AZC_3443 nifH -284 4.3 TGTTTCCTTTCCAACA
AZC_3443 nifH -255 4.8 TGTCAGGTTCGAGACA
AZC_3446 nifW -192 4.1 TGTCGCCTTCGGGGCA
Bradyrhizobium japonicum USDA 110
blr2143 cpx1 -129 4.3 TGTCGGCATTGAGACT
blr2143 cpx1 -110 4.2 TGCCAGAAACCTGACA
blr2144 cpxP -265 4 TATGGCGATGCCGACA
blr2037 nifA -39 3.8 TGTCATCTCGTCAACA
blr2036 fixR -126 3.9 TGTCTTGAATGCGCCA
blr2036 fixR -106 3.8 TTCCGCGTGCGCGACA
bll2060 groES3 -194 3.9 TGTCATTTTCACGACA
blr1719 modB -369 4 TGTCCGCTTGGAAACA
blr1719 modB -349 4.2 TGCCAGAAACCTGACA
blr6951 modA -215 4.5 TGTCAGCTTGCCGACC
blr6951 modA -195 5.6 TGTCGGAAATCCGACA
blr1720 hupS -186 3.8 CGTCGAAAACTGGACA
blr1720 hupS -34 3.8 CGTAACGCTGGCGACA
blr1743 nifD -155 5.1 TGTCGGATTCGCAACA
blr1771 nifW -495 4.3 TGTCGCATTTGCCACG
blr1883 rpoN -376 4.2 TGTCTGAGTGGCGGCA
blr1755 iscN -116 5.2 TGTCAGGAACCCGACA
bll1075 fdxN -257 3.6 TTTCGAGCTCGCTACA
Bradyrhizobium sp. BTAi1
BBta_5884 bolA -139 5 TGTCGCAAAGGCGACG
BBta_5882 fer2 -325 3.6 TGTCGACATCCGAACG
BBta_0121 rpoN -184 4.9 TGTCGCGGGTGTGACA
BBta_5925 nifH -262 5.1 TGTCGGGTTTGCAACA
BBta_5872 fixB -171 5 TGTCGCATTCCCGACG
BBta_5880 cheY -168 5.1 TGTTGCAAACCCGACA
BBta_2080 modA -224 4.1 CGTTGTGTTTGCGACA
BBta_2080 modA -193 4.1 TGTCGAAAGTCGAACA
BBta_5935 fixR -151 5.1 TGTCGTGAATGCGACA
BBta_5904 nifB -141 5 TGTTGGCAAGGCGACA
BBta_5909 iscN -112 4.3 CGTCGGAAACGCCACA
BBta_5909 iscN -190 4.8 TGTCGGATTTGCGCCA
BBta_5909 iscN -130 5.2 TGTCGGAAAGTCGACA
BBta_5879 nifH -267 5.1 TGTCGGGTTTGCAACA
BBta_5932 fdxN -141 4.9 TGTCGGGAGAGCGACA
BBta_5932 fdxN -160 5.4 TGTCGCATCTGCGACA
BBta_5933 nifA -64 4 TGTTAGAACGCCTACA
BBta_5936 xdhC -255 5.1 TGTCGCATTCACGACA
BBta_5863 ahpC -105 5.2 TGTCGACTTTCCGACA
Mesorhizobium loti MAFF303099
mll6127 ompW -194 4.6 TGTCGGATCTTCGACG
mll6127 ompW -177 4.3 AGTCGGACATGAGACA
mlr6364 cpxP -331 3.6 TGTCAAATCCGCATCA
mll5855 nifB -156 5.1 TGTCGGCGACCTGACA
msr5868 PF05082 -459 4.2 TGTCCAATTCACGACA
msr5868 PF05082 -217 4.2 CGTCGCCAAATCGACA
mlr5905 nifH -207 4.3 TGTCAGGGCCGCTACA
msr5928 PF05082 -77 3.6 GGTCGGCGATGTGACT
mll5942 iscN -115 4.6 TGTTGGATGTGAGACA
mll5862 fixB -161 5.2 TGTCGAAAAGCCGACA
mll5942 iscN -133 4.8 TGTCCGACATCCGACA
mll5873 ahpC1 -482 4.1 GGTCCGACTTCCGACA
mll5873 ahpC1 -462 3.9 TGTCCAGCTTCGGACA
mlr5875 mlr5875 -154 4 TGTCATGTCCGGGACA
Nitrobacter winogradskyi Nb-255
Nwi_1312 grlA -112 3.6 TGTGACAACCCCGGCA
Rhizobium etli CFN 42
RHE_PD00215 cpxA -193 4.8 TGTTAGATACGCGACA
RHE_PD00224 fixB -156 4.6 TGTCGGGAAGCTTACA
RHE_PD00229 nifB -139 4.8 TGTCGGAAGCTTGACA
RHE_PD00259 nifQ -176 3.7 TGTCCGTTTGGCGATA
RHE_PD00260 nifH -190 3.9 TGGCGGTTTCGAGACA
RHE_PD00217 ahpC1 -407 3.7 TGTCGGACCTCAAACT
RHE_PD00308 nifH -138 4 TTTCTGAAACCCAACA
RHE_PD00308 nifH -195 5 TGTCTGATCGGCGACA
RHE_PD00202 nifH -195 5 TGTCTGATCGGCGACA
RHE_PD00202 nifH -138 4 TTTCTGAAACCCAACA
Rhizobium leguminosarum bv. viciae 3841
pRL100162 nifH -202 4.8 TGTCGGTTACGTGACA
pRL100162 nifH -231 4.3 GGTCAGATATTCGACA
pRL100200 fixB -148 4.9 TGTCGGCAACCCTACA
Rhizobium sp. NGR234
NGR_a00930 nifS -282 3.8 TCGCGCGAGGGCGACA
NGR_a01190 nifQ -228 5.1 TGTCAGAGAGCCGACA
NGR_a01270 nifB -144 5.2 TGTCGCGAATTCGACA
NGR_a00890 nifH -208 5.3 TGTCGGCTCCGCGACA
NGR_c29850 modB -55 4 CGTCGTGCATCCAACA
NGR_a02700 cpxP -183 5.3 TGTCGCGTCCGCGACA
NGR_a01130 nifH -211 5.3 TGTCGGCTCCGCGACA
NGR_a01190 nifQ -200 4.9 TGTCGTCCTTCCGACA
NGR_a01200 ahpC1 -273 4.9 TGTCGGAAGGACGACA
NGR_a01200 ahpC1 -245 5.1 TGTCGGCTCTCTGACA
NGR_a01220 fixB -162 4.8 TGTCATGAAGCCGACA
NGR_a01210 iscN -114 4.1 TGTCGTACAAACGACA
Rhodopseudomonas palustris CGA009
RPA4631 fdxN -129 4.3 TGTCGGGGGCCTTACA
RPA4610 iscN -123 5.3 TGTCGGACCTCCGACA
RPA4605 fixB -184 5.5 TGTCGCCTTCCCGACA
RPA4631 fdxN -147 5.1 TGTCAGACTTGCGACA
RPA4620 nifH -252 4.4 TGTCGGATTCTAAACA
RPA4610 iscN -140 4 CGTCGGCTTCACGACG
RPA1373 nifE -198 4.5 TGTCGGATTTTTGACG
RPA1373 nifE -223 4.4 TGTCAGATTCACAACA
RPA4633 fixR -161 4.6 TGTCGCAAAGCCAACG
RPA4633 fixR -118 3.7 TGTCGTTGTGATGACA
RPA0962 hupS -202 3.7 TGTCAGCGCCGCAACC
RPA1001 cheY -147 4.5 TGTCAGGTTTGCGACC
RPA4634 xdhC -111 4.6 CGTTGGCTTTGCGACA
Sinorhizobium meliloti 1021
SMa0825 nifH -192 5 TGTCGGCTTAGCGACA
SMa0814 nifB -130 5.4 TGTCGGAAGTCCGACA
SMa0872 orf110 -194 5.1 TGTCAGGTCCGCGACA
SMa0822 fixB -244 4.9 TGTCGGCCCCTCGACA
Xanthobacter autotrophicus Py2
Xaut_0088 nifH -358 4.5 CGTCGAACTTGCGACA
Xaut_0149 iscN -122 5.5 TGTCGCATTCGCGACA
Xaut_0143 nifH -271 4.3 TGTCGCGTTCGACACA
Xaut_0142 fixB -262 4.2 CGTCGCAATTGTGACG
Xaut_0142 fixB -180 5.2 TGTCGCCTTCCTGACA
Xaut_0111 nifB -284 4.1 TGTCCCCGTGGGGACA
Xaut_0082 nifA -56 4.1 TGTCGCTAATCATACA
Xaut_0083 fdxN -148 5.3 TGTCGCACTTGCGACA
Xaut_2332 fer2 -163 3.6 TGTCGCTTTCCCGCCC
Xaut_0124 bolA -103 5.1 TGTCTCCTTTGCGACA
Xaut_0111 nifB -141 4.2 TGTTGTTAAGCCGACA
Xaut_0106 iscN -115 4.1 CGTCGCAAAGACAACA
Xaut_0106 iscN -133 4.4 TGTCCGGAATCGGACA
Xaut_0088 nifH -233 4.2 TGTCGGGTTCTGAACA
Xaut_0125 xdhC -74 5.1 TGTCGCAAAGGAGACA
Xaut_0143 nifH -301 4.3 TGTTTTAATCCCGACA
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