Profile of regulator NifA in Rhizobiales
Properties
| Regulator family: |
Fis |
| Regulation mode: |
activator |
| Biological process: |
Nitrogen fixation |
| Effector: |
|
| Regulog: |
NifA - Rhizobiales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Azorhizobium caulinodans ORS 571
|
|
AZC_1051 |
ahpC |
-161 |
5.6 |
TGTCGGAAAGCCGACA |
|
AZC_1051 |
ahpC |
-206 |
4.3 |
CGGCGGGTTCCCGACA |
|
AZC_1041 |
nifH |
-281 |
4.7 |
TGTCGCGTTTGAAACA |
|
AZC_3414 |
nifB |
-138 |
5.1 |
TGTTGGCAACGCGACA |
|
AZC_3442 |
cheY |
-192 |
4.8 |
TGTCTCGAACCTGACA |
|
AZC_3442 |
cheY |
-163 |
4.3 |
TGTTGGAAAGGAAACA |
|
AZC_0303 |
fer2 |
-67 |
3.8 |
TGTGGGGCCTCCGGCA |
|
AZC_1052 |
xdhC |
-190 |
4.3 |
TGTCGGGAACCCGCCG |
|
AZC_1043 |
fdxN |
-142 |
5.2 |
TGTCGGGGGCGCGACA |
|
AZC_1052 |
xdhC |
-235 |
5.6 |
TGTCGGCTTTCCGACA |
|
AZC_3437 |
bolA |
-128 |
5.4 |
TGTCGCATGTGCGACA |
|
AZC_1043 |
fdxN |
-160 |
5.3 |
TGTCGCAGTCGCGACA |
|
AZC_3409 |
iscN |
-116 |
4.3 |
GGTCTGCTTCGCGACA |
|
AZC_3409 |
iscN |
-134 |
5.5 |
TGTCGCAAAGGCGACA |
|
AZC_3447 |
fixB |
-113 |
4.2 |
TGTGGCATGCCAGACA |
|
AZC_3447 |
fixB |
-179 |
5 |
TGTCGCATTCCCGACG |
|
AZC_3437 |
bolA |
-121 |
4.1 |
TGTGCGACATGCGACA |
|
AZC_3443 |
nifH |
-284 |
4.3 |
TGTTTCCTTTCCAACA |
|
AZC_3443 |
nifH |
-255 |
4.8 |
TGTCAGGTTCGAGACA |
|
AZC_3446 |
nifW |
-192 |
4.1 |
TGTCGCCTTCGGGGCA |
|
Bradyrhizobium japonicum USDA 110
|
|
blr2143 |
cpx1 |
-129 |
4.3 |
TGTCGGCATTGAGACT |
|
blr2143 |
cpx1 |
-110 |
4.2 |
TGCCAGAAACCTGACA |
|
blr2144 |
cpxP |
-265 |
4 |
TATGGCGATGCCGACA |
|
blr2037 |
nifA |
-39 |
3.8 |
TGTCATCTCGTCAACA |
|
blr2036 |
fixR |
-126 |
3.9 |
TGTCTTGAATGCGCCA |
|
blr2036 |
fixR |
-106 |
3.8 |
TTCCGCGTGCGCGACA |
|
bll2060 |
groES3 |
-194 |
3.9 |
TGTCATTTTCACGACA |
|
blr1719 |
modB |
-369 |
4 |
TGTCCGCTTGGAAACA |
|
blr1719 |
modB |
-349 |
4.2 |
TGCCAGAAACCTGACA |
|
blr6951 |
modA |
-215 |
4.5 |
TGTCAGCTTGCCGACC |
|
blr6951 |
modA |
-195 |
5.6 |
TGTCGGAAATCCGACA |
|
blr1720 |
hupS |
-186 |
3.8 |
CGTCGAAAACTGGACA |
|
blr1720 |
hupS |
-34 |
3.8 |
CGTAACGCTGGCGACA |
|
blr1743 |
nifD |
-155 |
5.1 |
TGTCGGATTCGCAACA |
|
blr1771 |
nifW |
-495 |
4.3 |
TGTCGCATTTGCCACG |
|
blr1883 |
rpoN |
-376 |
4.2 |
TGTCTGAGTGGCGGCA |
|
blr1755 |
iscN |
-116 |
5.2 |
TGTCAGGAACCCGACA |
|
bll1075 |
fdxN |
-257 |
3.6 |
TTTCGAGCTCGCTACA |
|
Bradyrhizobium sp. BTAi1
|
|
BBta_5884 |
bolA |
-139 |
5 |
TGTCGCAAAGGCGACG |
|
BBta_5882 |
fer2 |
-325 |
3.6 |
TGTCGACATCCGAACG |
|
BBta_0121 |
rpoN |
-184 |
4.9 |
TGTCGCGGGTGTGACA |
|
BBta_5925 |
nifH |
-262 |
5.1 |
TGTCGGGTTTGCAACA |
|
BBta_5872 |
fixB |
-171 |
5 |
TGTCGCATTCCCGACG |
|
BBta_5880 |
cheY |
-168 |
5.1 |
TGTTGCAAACCCGACA |
|
BBta_2080 |
modA |
-224 |
4.1 |
CGTTGTGTTTGCGACA |
|
BBta_2080 |
modA |
-193 |
4.1 |
TGTCGAAAGTCGAACA |
|
BBta_5935 |
fixR |
-151 |
5.1 |
TGTCGTGAATGCGACA |
|
BBta_5904 |
nifB |
-141 |
5 |
TGTTGGCAAGGCGACA |
|
BBta_5909 |
iscN |
-112 |
4.3 |
CGTCGGAAACGCCACA |
|
BBta_5909 |
iscN |
-190 |
4.8 |
TGTCGGATTTGCGCCA |
|
BBta_5909 |
iscN |
-130 |
5.2 |
TGTCGGAAAGTCGACA |
|
BBta_5879 |
nifH |
-267 |
5.1 |
TGTCGGGTTTGCAACA |
|
BBta_5932 |
fdxN |
-141 |
4.9 |
TGTCGGGAGAGCGACA |
|
BBta_5932 |
fdxN |
-160 |
5.4 |
TGTCGCATCTGCGACA |
|
BBta_5933 |
nifA |
-64 |
4 |
TGTTAGAACGCCTACA |
|
BBta_5936 |
xdhC |
-255 |
5.1 |
TGTCGCATTCACGACA |
|
BBta_5863 |
ahpC |
-105 |
5.2 |
TGTCGACTTTCCGACA |
|
Mesorhizobium loti MAFF303099
|
|
mll6127 |
ompW |
-194 |
4.6 |
TGTCGGATCTTCGACG |
|
mll6127 |
ompW |
-177 |
4.3 |
AGTCGGACATGAGACA |
|
mlr6364 |
cpxP |
-331 |
3.6 |
TGTCAAATCCGCATCA |
|
mll5855 |
nifB |
-156 |
5.1 |
TGTCGGCGACCTGACA |
|
msr5868 |
PF05082 |
-459 |
4.2 |
TGTCCAATTCACGACA |
|
msr5868 |
PF05082 |
-217 |
4.2 |
CGTCGCCAAATCGACA |
|
mlr5905 |
nifH |
-207 |
4.3 |
TGTCAGGGCCGCTACA |
|
msr5928 |
PF05082 |
-77 |
3.6 |
GGTCGGCGATGTGACT |
|
mll5942 |
iscN |
-115 |
4.6 |
TGTTGGATGTGAGACA |
|
mll5862 |
fixB |
-161 |
5.2 |
TGTCGAAAAGCCGACA |
|
mll5942 |
iscN |
-133 |
4.8 |
TGTCCGACATCCGACA |
|
mll5873 |
ahpC1 |
-482 |
4.1 |
GGTCCGACTTCCGACA |
|
mll5873 |
ahpC1 |
-462 |
3.9 |
TGTCCAGCTTCGGACA |
|
mlr5875 |
mlr5875 |
-154 |
4 |
TGTCATGTCCGGGACA |
|
Nitrobacter winogradskyi Nb-255
|
|
Nwi_1312 |
grlA |
-112 |
3.6 |
TGTGACAACCCCGGCA |
|
Rhizobium etli CFN 42
|
|
RHE_PD00215 |
cpxA |
-193 |
4.8 |
TGTTAGATACGCGACA |
|
RHE_PD00224 |
fixB |
-156 |
4.6 |
TGTCGGGAAGCTTACA |
|
RHE_PD00229 |
nifB |
-139 |
4.8 |
TGTCGGAAGCTTGACA |
|
RHE_PD00259 |
nifQ |
-176 |
3.7 |
TGTCCGTTTGGCGATA |
|
RHE_PD00260 |
nifH |
-190 |
3.9 |
TGGCGGTTTCGAGACA |
|
RHE_PD00217 |
ahpC1 |
-407 |
3.7 |
TGTCGGACCTCAAACT |
|
RHE_PD00308 |
nifH |
-138 |
4 |
TTTCTGAAACCCAACA |
|
RHE_PD00308 |
nifH |
-195 |
5 |
TGTCTGATCGGCGACA |
|
RHE_PD00202 |
nifH |
-195 |
5 |
TGTCTGATCGGCGACA |
|
RHE_PD00202 |
nifH |
-138 |
4 |
TTTCTGAAACCCAACA |
|
Rhizobium leguminosarum bv. viciae 3841
|
|
pRL100162 |
nifH |
-202 |
4.8 |
TGTCGGTTACGTGACA |
|
pRL100162 |
nifH |
-231 |
4.3 |
GGTCAGATATTCGACA |
|
pRL100200 |
fixB |
-148 |
4.9 |
TGTCGGCAACCCTACA |
|
Rhizobium sp. NGR234
|
|
NGR_a00930 |
nifS |
-282 |
3.8 |
TCGCGCGAGGGCGACA |
|
NGR_a01190 |
nifQ |
-228 |
5.1 |
TGTCAGAGAGCCGACA |
|
NGR_a01270 |
nifB |
-144 |
5.2 |
TGTCGCGAATTCGACA |
|
NGR_a00890 |
nifH |
-208 |
5.3 |
TGTCGGCTCCGCGACA |
|
NGR_c29850 |
modB |
-55 |
4 |
CGTCGTGCATCCAACA |
|
NGR_a02700 |
cpxP |
-183 |
5.3 |
TGTCGCGTCCGCGACA |
|
NGR_a01130 |
nifH |
-211 |
5.3 |
TGTCGGCTCCGCGACA |
|
NGR_a01190 |
nifQ |
-200 |
4.9 |
TGTCGTCCTTCCGACA |
|
NGR_a01200 |
ahpC1 |
-273 |
4.9 |
TGTCGGAAGGACGACA |
|
NGR_a01200 |
ahpC1 |
-245 |
5.1 |
TGTCGGCTCTCTGACA |
|
NGR_a01220 |
fixB |
-162 |
4.8 |
TGTCATGAAGCCGACA |
|
NGR_a01210 |
iscN |
-114 |
4.1 |
TGTCGTACAAACGACA |
|
Rhodopseudomonas palustris CGA009
|
|
RPA4631 |
fdxN |
-129 |
4.3 |
TGTCGGGGGCCTTACA |
|
RPA4610 |
iscN |
-123 |
5.3 |
TGTCGGACCTCCGACA |
|
RPA4605 |
fixB |
-184 |
5.5 |
TGTCGCCTTCCCGACA |
|
RPA4631 |
fdxN |
-147 |
5.1 |
TGTCAGACTTGCGACA |
|
RPA4620 |
nifH |
-252 |
4.4 |
TGTCGGATTCTAAACA |
|
RPA4610 |
iscN |
-140 |
4 |
CGTCGGCTTCACGACG |
|
RPA1373 |
nifE |
-198 |
4.5 |
TGTCGGATTTTTGACG |
|
RPA1373 |
nifE |
-223 |
4.4 |
TGTCAGATTCACAACA |
|
RPA4633 |
fixR |
-161 |
4.6 |
TGTCGCAAAGCCAACG |
|
RPA4633 |
fixR |
-118 |
3.7 |
TGTCGTTGTGATGACA |
|
RPA0962 |
hupS |
-202 |
3.7 |
TGTCAGCGCCGCAACC |
|
RPA1001 |
cheY |
-147 |
4.5 |
TGTCAGGTTTGCGACC |
|
RPA4634 |
xdhC |
-111 |
4.6 |
CGTTGGCTTTGCGACA |
|
Sinorhizobium meliloti 1021
|
|
SMa0825 |
nifH |
-192 |
5 |
TGTCGGCTTAGCGACA |
|
SMa0814 |
nifB |
-130 |
5.4 |
TGTCGGAAGTCCGACA |
|
SMa0872 |
orf110 |
-194 |
5.1 |
TGTCAGGTCCGCGACA |
|
SMa0822 |
fixB |
-244 |
4.9 |
TGTCGGCCCCTCGACA |
|
Xanthobacter autotrophicus Py2
|
|
Xaut_0088 |
nifH |
-358 |
4.5 |
CGTCGAACTTGCGACA |
|
Xaut_0149 |
iscN |
-122 |
5.5 |
TGTCGCATTCGCGACA |
|
Xaut_0143 |
nifH |
-271 |
4.3 |
TGTCGCGTTCGACACA |
|
Xaut_0142 |
fixB |
-262 |
4.2 |
CGTCGCAATTGTGACG |
|
Xaut_0142 |
fixB |
-180 |
5.2 |
TGTCGCCTTCCTGACA |
|
Xaut_0111 |
nifB |
-284 |
4.1 |
TGTCCCCGTGGGGACA |
|
Xaut_0082 |
nifA |
-56 |
4.1 |
TGTCGCTAATCATACA |
|
Xaut_0083 |
fdxN |
-148 |
5.3 |
TGTCGCACTTGCGACA |
|
Xaut_2332 |
fer2 |
-163 |
3.6 |
TGTCGCTTTCCCGCCC |
|
Xaut_0124 |
bolA |
-103 |
5.1 |
TGTCTCCTTTGCGACA |
|
Xaut_0111 |
nifB |
-141 |
4.2 |
TGTTGTTAAGCCGACA |
|
Xaut_0106 |
iscN |
-115 |
4.1 |
CGTCGCAAAGACAACA |
|
Xaut_0106 |
iscN |
-133 |
4.4 |
TGTCCGGAATCGGACA |
|
Xaut_0088 |
nifH |
-233 |
4.2 |
TGTCGGGTTCTGAACA |
|
Xaut_0125 |
xdhC |
-74 |
5.1 |
TGTCGCAAAGGAGACA |
|
Xaut_0143 |
nifH |
-301 |
4.3 |
TGTTTTAATCCCGACA |
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Regulatory Sites
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