Regulog NifA - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen fixation |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NifA
- By TF family - Fis
- By pathway - Nitrogen fixation
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Azorhizobium caulinodans ORS 571 | 34 | 12 |
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 26 | 13 |
| Bradyrhizobium sp. BTAi1 | 45 | 15 |
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | 29 | 10 |
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | 1 | 1 |
| Rhizobium etli CFN 42 | 19 | 8 |
| Rhizobium leguminosarum bv. viciae 3841 | 11 | 2 |
| Rhizobium sp. NGR234 | 28 | 10 |
| Rhodopseudomonas palustris CGA009 | 38 | 9 |
| Sinorhizobium meliloti 1021 | 13 | 4 |
| Xanthobacter autotrophicus Py2 | 36 | 11 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| mlr5875 |
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Mesorhizobium loti MAFF303099 Site: position = -154 score = 4.00585 sequence = TGTCATGTCCGGGACA Gene: mlr5875: Hypothetical protein |
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Hypothetical protein |
| cpxA |
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Gene: mlr5876: Cytochrome P450 monooxygenase protein |
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Rhizobium etli CFN 42 Site: position = -193 score = 4.84308 sequence = TGTTAGATACGCGACA Gene: RHE_PD00215: Cytochrome P450 monooxygenase protein |
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Gene: NGR_a01170: Cytochrome P450 monooxygenase protein |
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Cytochrome P450 monooxygenase protein |
| CRON 2. | ||||||||||||||||
| modA |
Gene: Atu2561: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
Gene: AZC_2368: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
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*2
Bradyrhizobium japonicum USDA 110 Site: position = -215 score = 4.45982 sequence = TGTCAGCTTGCCGACC Site: position = -195 score = 5.61936 sequence = TGTCGGAAATCCGACA Gene: blr6951: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) Gene: blr8160: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
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Bradyrhizobium sp. BTAi1 Site: position = -224 score = 4.14568 sequence = CGTTGTGTTTGCGACA Site: position = -193 score = 4.08258 sequence = TGTCGAAAGTCGAACA Gene: BBta_2080: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
Gene: BMEII0005: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
Gene: mll1465: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
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Gene: Nwi_0340: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
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Gene: RPA4717: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
Gene: SMc03196: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
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Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) |
| modB |
Gene: Atu2562: Molybdate ABC transporter, permease protein |
Gene: AZC_2369: Molybdate ABC transporter, permease protein |
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*3
Bradyrhizobium japonicum USDA 110 Site: position = -369 score = 4.01356 sequence = TGTCCGCTTGGAAACA Site: position = -349 score = 4.2366 sequence = TGCCAGAAACCTGACA Gene: blr1719: Molybdate ABC transporter, permease protein Gene: blr6952: Molybdate ABC transporter, permease protein Gene: blr8161: Molybdate ABC transporter, permease protein |
Gene: BBta_2079: Molybdate ABC transporter, permease protein |
Gene: BMEII0004: Molybdate ABC transporter, permease protein |
Gene: mll1464: Molybdate ABC transporter, permease protein |
Gene: Meso_2721: Molybdate ABC transporter, permease protein |
Gene: Nwi_0339: Molybdate ABC transporter, permease protein |
Gene: RHE_CH04072: Molybdate ABC transporter, permease protein |
Gene: RL4686: Molybdate ABC transporter, permease protein |
*
Rhizobium sp. NGR234 Site: position = -55 score = 4.00662 sequence = CGTCGTGCATCCAACA Gene: NGR_c29850: Molybdate ABC transporter, permease protein |
Gene: RPA4716: Molybdate ABC transporter, permease protein |
Gene: SMc03197: Molybdate ABC transporter, permease protein |
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Molybdate ABC transporter, permease protein |
| modC |
Gene: Atu2563: Molybdate ABC transporter, ATP-binding protein |
Gene: AZC_2370: Molybdate ABC transporter, ATP-binding protein |
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3
Bradyrhizobium japonicum USDA 110 Gene: bll1780: Molybdate ABC transporter, ATP-binding protein Gene: blr8162: Molybdate ABC transporter, ATP-binding protein Gene: blr6953: Molybdate ABC transporter, ATP-binding protein |
Gene: BBta_2078: Molybdate ABC transporter, ATP-binding protein |
Gene: BMEII0003: Molybdate ABC transporter, ATP-binding protein |
Gene: mll1463: Molybdate ABC transporter, ATP-binding protein |
Gene: Meso_2720: Molybdate ABC transporter, ATP-binding protein |
Gene: Nwi_0338: Molybdate ABC transporter, ATP-binding protein |
Gene: RHE_CH04073: Molybdate ABC transporter, ATP-binding protein |
Gene: RL4687: Molybdate ABC transporter, ATP-binding protein |
Gene: NGR_c29860: Molybdate ABC transporter, ATP-binding protein |
Gene: RPA4715: Molybdate ABC transporter, ATP-binding protein |
Gene: SMc03198: Molybdate ABC transporter, ATP-binding protein |
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Molybdate ABC transporter, ATP-binding protein |
| CRON 3. | ||||||||||||||||
| groES |
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*4
Bradyrhizobium japonicum USDA 110 Gene: blr6978: Heat shock protein 60 family co-chaperone GroES Gene: blr5625: Heat shock protein 60 family co-chaperone GroES Gene: bsr7532: Heat shock protein 60 family co-chaperone GroES Site: position = -194 score = 3.88973 sequence = TGTCATTTTCACGACA Gene: bll2060: Heat shock protein 60 family co-chaperone GroES |
Gene: BBta_1672: Heat shock protein 60 family co-chaperone GroES |
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2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_2573: Heat shock protein 60 family co-chaperone GroES Gene: Nwi_2191: Heat shock protein 60 family co-chaperone GroES |
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2
Rhodopseudomonas palustris CGA009 Gene: RPA1141: Heat shock protein 60 family co-chaperone GroES Gene: RPA2165: Heat shock protein 60 family co-chaperone GroES |
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Heat shock protein 60 family co-chaperone GroES |
| groEL |
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4
Bradyrhizobium japonicum USDA 110 Gene: blr6979: Heat shock protein 60 family chaperone GroEL Gene: blr7533: Heat shock protein 60 family chaperone GroEL Gene: bll2059: Heat shock protein 60 family chaperone GroEL Gene: blr5626: Heat shock protein 60 family chaperone GroEL |
Gene: BBta_1671: Heat shock protein 60 family chaperone GroEL |
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2
Nitrobacter winogradskyi Nb-255 Gene: Nwi_2574: Heat shock protein 60 family chaperone GroEL Gene: Nwi_2192: Heat shock protein 60 family chaperone GroEL |
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Gene: RPA1140: Heat shock protein 60 family chaperone GroEL |
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Heat shock protein 60 family chaperone GroEL |
| CRON 4. | ||||||||||||||||
| ompW |
Gene: Atu3191: Outer membrane protein W precursor |
Gene: AZC_3742: Outer membrane protein W precursor |
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2
Bradyrhizobium japonicum USDA 110 Gene: bll1766: Outer membrane protein W precursor Gene: blr1311: Outer membrane protein W precursor |
Gene: BBta_0946: Outer membrane protein W precursor |
Gene: BMEI0454: Outer membrane protein W precursor |
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Mesorhizobium loti MAFF303099 Site: position = -194 score = 4.63177 sequence = TGTCGGATCTTCGACG Site: position = -177 score = 4.25224 sequence = AGTCGGACATGAGACA Gene: mll6127: Outer membrane protein W precursor |
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Gene: NGR_a02570: Outer membrane protein W precursor |
Gene: RPA4502: Outer membrane protein W precursor |
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Gene: Xaut_1968: Outer membrane protein W precursor |
Outer membrane protein W precursor |
| CRON 5. | ||||||||||||||||
| hupS |
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Gene: AZC_0598: Uptake hydrogenase small subunit precursor (EC 1.12.99.6) |
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*2
Bradyrhizobium japonicum USDA 110 Site: position = -186 score = 3.82714 sequence = CGTCGAAAACTGGACA Site: position = -34 score = 3.79861 sequence = CGTAACGCTGGCGACA Gene: blr1720: Uptake hydrogenase small subunit precursor (EC 1.12.99.6) Gene: bll6942: Uptake hydrogenase small subunit precursor (EC 1.12.99.6) |
Gene: BBta_1996: Uptake hydrogenase small subunit precursor (EC 1.12.99.6) |
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Rhodopseudomonas palustris CGA009 Site: position = -202 score = 3.71307 sequence = TGTCAGCGCCGCAACC Gene: RPA0962: Uptake hydrogenase small subunit precursor (EC 1.12.99.6) |
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Gene: Xaut_2173: Uptake hydrogenase small subunit precursor (EC 1.12.99.6) |
Uptake hydrogenase small subunit precursor (EC 1.12.99.6) |
| hupL |
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Gene: AZC_0599: Uptake hydrogenase large subunit (EC 1.12.99.6) |
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2
Bradyrhizobium japonicum USDA 110 Gene: blr1721: Uptake hydrogenase large subunit (EC 1.12.99.6) Gene: bll6941: Uptake hydrogenase large subunit (EC 1.12.99.6) |
Gene: BBta_1997: Uptake hydrogenase large subunit (EC 1.12.99.6) |
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Gene: RPA0963: Uptake hydrogenase large subunit (EC 1.12.99.6) |
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Gene: Xaut_2174: Uptake hydrogenase large subunit (EC 1.12.99.6) |
Uptake hydrogenase large subunit (EC 1.12.99.6) |
| hupC |
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Gene: AZC_0600: Ni,Fe-hydrogenase I cytochrome b subunit |
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2
Bradyrhizobium japonicum USDA 110 Gene: bll6940: Ni,Fe-hydrogenase I cytochrome b subunit Gene: blr1722: Ni,Fe-hydrogenase I cytochrome b subunit |
Gene: BBta_1998: Ni,Fe-hydrogenase I cytochrome b subunit |
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Gene: RPA0964: Ni,Fe-hydrogenase I cytochrome b subunit |
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Gene: Xaut_2175: Ni,Fe-hydrogenase I cytochrome b subunit |
Ni,Fe-hydrogenase I cytochrome b subunit |
| CRON 6. | ||||||||||||||||
| nifH |
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*2
Azorhizobium caulinodans ORS 571 Site: position = -284 score = 4.25305 sequence = TGTTTCCTTTCCAACA Site: position = -255 score = 4.78506 sequence = TGTCAGGTTCGAGACA Gene: AZC_3443: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Site: position = -281 score = 4.66604 sequence = TGTCGCGTTTGAAACA Gene: AZC_1041: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Gene: blr1769: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
*2
Bradyrhizobium sp. BTAi1 Site: position = -267 score = 5.12639 sequence = TGTCGGGTTTGCAACA Gene: BBta_5879: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Site: position = -262 score = 5.12639 sequence = TGTCGGGTTTGCAACA Gene: BBta_5925: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Mesorhizobium loti MAFF303099 Site: position = -207 score = 4.26904 sequence = TGTCAGGGCCGCTACA Gene: mlr5905: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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*3
Rhizobium etli CFN 42 Site: position = -138 score = 4.00122 sequence = TTTCTGAAACCCAACA Site: position = -195 score = 4.95104 sequence = TGTCTGATCGGCGACA Gene: RHE_PD00308: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Site: position = -195 score = 4.95104 sequence = TGTCTGATCGGCGACA Site: position = -138 score = 4.00122 sequence = TTTCTGAAACCCAACA Gene: RHE_PD00202: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Site: position = -190 score = 3.90959 sequence = TGGCGGTTTCGAGACA Gene: RHE_PD00260: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -202 score = 4.78788 sequence = TGTCGGTTACGTGACA Site: position = -231 score = 4.2882 sequence = GGTCAGATATTCGACA Gene: pRL100162: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
*2
Rhizobium sp. NGR234 Site: position = -211 score = 5.34069 sequence = TGTCGGCTCCGCGACA Gene: NGR_a01130: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Site: position = -208 score = 5.34069 sequence = TGTCGGCTCCGCGACA Gene: NGR_a00890: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Rhodopseudomonas palustris CGA009 Site: position = -252 score = 4.42233 sequence = TGTCGGATTCTAAACA Gene: RPA4620: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Sinorhizobium meliloti 1021 Site: position = -192 score = 5.04403 sequence = TGTCGGCTTAGCGACA Gene: SMa0825: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
*2
Xanthobacter autotrophicus Py2 Site: position = -271 score = 4.33165 sequence = TGTCGCGTTCGACACA Site: position = -301 score = 4.26056 sequence = TGTTTTAATCCCGACA Gene: Xaut_0143: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Site: position = -358 score = 4.5443 sequence = CGTCGAACTTGCGACA Site: position = -233 score = 4.21163 sequence = TGTCGGGTTCTGAACA Gene: Xaut_0088: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
| nifD |
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Gene: AZC_1040: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
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Bradyrhizobium japonicum USDA 110 Site: position = -155 score = 5.12639 sequence = TGTCGGATTCGCAACA Gene: blr1743: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: BBta_5924: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
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Gene: mlr5906: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
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2
Rhizobium etli CFN 42 Gene: RHE_PD00307: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Gene: RHE_PD00201: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: pRL100161: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
2
Rhizobium sp. NGR234 Gene: NGR_a01120: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Gene: NGR_a00880: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: RPA4619: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: SMa0827: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: Xaut_0089: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
| nifK |
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Gene: AZC_1039: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
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Gene: blr1744: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: BBta_5923: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
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Gene: mlr5907: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
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2
Rhizobium etli CFN 42 Gene: RHE_PD00306: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) Gene: RHE_PD00200: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: pRL100160: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
2
Rhizobium sp. NGR234 Gene: NGR_a01110: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) Gene: NGR_a00870: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: RPA4618: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: SMa0829: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: Xaut_0090: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
| nifE |
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Gene: AZC_1038: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
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Gene: blr1745: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: BBta_5922: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
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Gene: mlr5908: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
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Gene: RHE_PD00199: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: pRL100159: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: NGR_a01100: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
*2
Rhodopseudomonas palustris CGA009 Site: position = -198 score = 4.47292 sequence = TGTCGGATTTTTGACG Site: position = -223 score = 4.40117 sequence = TGTCAGATTCACAACA Gene: RPA1373: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE Gene: RPA4617: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: SMa0830: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: Xaut_0091: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
| nifN |
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Gene: AZC_1037: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Gene: blr1746: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: BBta_5921: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Gene: mlr5909: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Gene: RHE_PD00198: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: pRL100158: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: NGR_a01090: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
2
Rhodopseudomonas palustris CGA009 Gene: RPA1372: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN Gene: RPA4616: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: SMa0873: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: Xaut_0092: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
| nifX |
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Gene: AZC_1036: Nitrogenase FeMo-cofactor carrier protein NifX |
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Gene: blr1747: Nitrogenase FeMo-cofactor carrier protein NifX |
Gene: BBta_5920: Nitrogenase FeMo-cofactor carrier protein NifX |
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Gene: mlr5911: Nitrogenase FeMo-cofactor carrier protein NifX |
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Gene: RHE_PD00197: Nitrogenase FeMo-cofactor carrier protein NifX |
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Gene: NGR_a01080: Nitrogenase FeMo-cofactor carrier protein NifX |
2
Rhodopseudomonas palustris CGA009 Gene: RPA1371: Nitrogenase FeMo-cofactor carrier protein NifX Gene: RPA4615: Nitrogenase FeMo-cofactor carrier protein NifX |
Gene: SMa0831: Nitrogenase FeMo-cofactor carrier protein NifX |
Gene: Xaut_0093: Nitrogenase FeMo-cofactor carrier protein NifX |
Nitrogenase FeMo-cofactor carrier protein NifX |
| PF03270 |
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Gene: AZC_1035: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: blr1748: Conserved hypothetical protein, probably related to nitrogen fixation protein |
Gene: BBta_5919: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: mlr5912: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: RHE_PD00304: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: NGR_a01070: Conserved hypothetical protein, probably related to nitrogen fixation protein |
Gene: RPA4614: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: Xaut_0094: Conserved hypothetical protein, probably related to nitrogen fixation protein |
Conserved hypothetical protein, probably related to nitrogen fixation protein |
| PF05082 |
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Gene: AZC_3451: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: bsr1749: Conserved hypothetical protein, probably related to nitrogen fixation protein |
Gene: BBta_5918: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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*2
Mesorhizobium loti MAFF303099 Site: position = -459 score = 4.21194 sequence = TGTCCAATTCACGACA Site: position = -217 score = 4.203 sequence = CGTCGCCAAATCGACA Gene: msr5868: Conserved hypothetical protein, probably related to nitrogen fixation protein Site: position = -77 score = 3.60698 sequence = GGTCGGCGATGTGACT Gene: msr5928: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: RHE_PD00303: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: RPA4613: Conserved hypothetical protein, probably related to nitrogen fixation protein |
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Gene: Xaut_0095: Conserved hypothetical protein, probably related to nitrogen fixation protein |
Conserved hypothetical protein, probably related to nitrogen fixation protein |
| fdxB |
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Gene: bsr1750: Nitrogenase specific ferredoxin III protein FdxB |
Gene: BBta_5917: Nitrogenase specific ferredoxin III protein FdxB |
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2
Mesorhizobium loti MAFF303099 Gene: mlr5869: Nitrogenase specific ferredoxin III protein FdxB Gene: mlr5930: Nitrogenase specific ferredoxin III protein FdxB |
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Gene: RHE_PD00302: Nitrogenase specific ferredoxin III protein FdxB |
Gene: pRL100156: Nitrogenase specific ferredoxin III protein FdxB |
Gene: NGR_a01050: Nitrogenase specific ferredoxin III protein FdxB |
Gene: RPA4612: Nitrogenase specific ferredoxin III protein FdxB |
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Gene: Xaut_0096: Nitrogenase specific ferredoxin III protein FdxB |
Nitrogenase specific ferredoxin III protein FdxB |
| nifQ |
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Gene: AZC_3444: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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Gene: blr1770: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
Gene: BBta_5878: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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Gene: mlr5871: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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*
Rhizobium etli CFN 42 Site: position = -176 score = 3.70601 sequence = TGTCCGTTTGGCGATA Gene: RHE_PD00259: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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*
Rhizobium sp. NGR234 Site: position = -228 score = 5.10598 sequence = TGTCAGAGAGCCGACA Site: position = -200 score = 4.9041 sequence = TGTCGTCCTTCCGACA Gene: NGR_a01190: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
Gene: RPA4611: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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Gene: Xaut_0097: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
| fdxN |
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*
Azorhizobium caulinodans ORS 571 Site: position = -142 score = 5.17024 sequence = TGTCGGGGGCGCGACA Site: position = -160 score = 5.34358 sequence = TGTCGCAGTCGCGACA Gene: AZC_1043: 4Fe-4S ferredoxin, nitrogenase-associated |
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*
Bradyrhizobium japonicum USDA 110 Site: position = -257 score = 3.63782 sequence = TTTCGAGCTCGCTACA Gene: bll1075: 4Fe-4S ferredoxin, nitrogenase-associated |
*
Bradyrhizobium sp. BTAi1 Site: position = -141 score = 4.87359 sequence = TGTCGGGAGAGCGACA Site: position = -160 score = 5.39995 sequence = TGTCGCATCTGCGACA Gene: BBta_5932: 4Fe-4S ferredoxin, nitrogenase-associated |
|
Gene: msl8750: 4Fe-4S ferredoxin, nitrogenase-associated |
|
|
Gene: RHE_PD00230: 4Fe-4S ferredoxin, nitrogenase-associated |
|
Gene: NGR_a01280: 4Fe-4S ferredoxin, nitrogenase-associated |
*
Rhodopseudomonas palustris CGA009 Site: position = -129 score = 4.27653 sequence = TGTCGGGGGCCTTACA Site: position = -147 score = 5.07993 sequence = TGTCAGACTTGCGACA Gene: RPA4631: 4Fe-4S ferredoxin, nitrogenase-associated |
Gene: SMa0811: 4Fe-4S ferredoxin, nitrogenase-associated |
*
Xanthobacter autotrophicus Py2 Site: position = -148 score = 5.34891 sequence = TGTCGCACTTGCGACA Gene: Xaut_0083: 4Fe-4S ferredoxin, nitrogenase-associated |
4Fe-4S ferredoxin, nitrogenase-associated |
| nifB |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -138 score = 5.06497 sequence = TGTTGGCAACGCGACA Gene: AZC_3414: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
|
Gene: blr1759: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
*
Bradyrhizobium sp. BTAi1 Site: position = -141 score = 5.03782 sequence = TGTTGGCAAGGCGACA Gene: BBta_5904: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
|
*
Mesorhizobium loti MAFF303099 Site: position = -156 score = 5.07171 sequence = TGTCGGCGACCTGACA Gene: mll5855: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
|
|
*
Rhizobium etli CFN 42 Site: position = -139 score = 4.76552 sequence = TGTCGGAAGCTTGACA Gene: RHE_PD00229: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
Gene: pRL100195: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
*
Rhizobium sp. NGR234 Site: position = -144 score = 5.23209 sequence = TGTCGCGAATTCGACA Gene: NGR_a01270: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
Gene: RPA4630: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
*
Sinorhizobium meliloti 1021 Site: position = -130 score = 5.42176 sequence = TGTCGGAAGTCCGACA Gene: SMa0814: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
*
Xanthobacter autotrophicus Py2 Site: position = -284 score = 4.05432 sequence = TGTCCCCGTGGGGACA Site: position = -141 score = 4.20195 sequence = TGTTGTTAAGCCGACA Gene: Xaut_0111: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
| frxA |
|
Gene: AZC_3415: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
|
Gene: bsr1760: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
Gene: BBta_5903: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
|
Gene: mll5941: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
|
|
|
|
|
Gene: RPA4629: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
|
Gene: Xaut_0112: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis |
| hesB |
|
Gene: AZC_3416: probable iron binding protein from the HesB_IscA_SufA family in Nif operon |
|
|
Gene: BBta_5902: probable iron binding protein from the HesB_IscA_SufA family in Nif operon |
|
|
|
|
|
|
|
Gene: RPA4628: probable iron binding protein from the HesB_IscA_SufA family in Nif operon |
|
Gene: Xaut_0113: probable iron binding protein from the HesB_IscA_SufA family in Nif operon |
probable iron binding protein from the HesB_IscA_SufA family in Nif operon |
| RPA4627 |
|
Gene: AZC_3417: Conserved hypothetical protein, associated with nitrogen fixation genes |
|
|
Gene: BBta_5901: Conserved hypothetical protein, associated with nitrogen fixation genes |
|
|
|
|
|
|
|
Gene: RPA4627: Conserved hypothetical protein, associated with nitrogen fixation genes |
|
Gene: Xaut_0114: Conserved hypothetical protein, associated with nitrogen fixation genes |
Conserved hypothetical protein, associated with nitrogen fixation genes |
| PF05484 |
|
2
Azorhizobium caulinodans ORS 571 Gene: AZC_1048: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis Gene: AZC_3418: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis |
|
|
Gene: BBta_5900: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis |
|
|
|
|
|
|
|
Gene: RPA4626: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis |
|
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0115: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis Gene: Xaut_0138: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis |
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis |
| nifZ |
|
2
Azorhizobium caulinodans ORS 571 Gene: AZC_3420: Nitrogen fixation protein NifZ Gene: AZC_3419: Nitrogen fixation protein NifZ |
|
Gene: blr1761: Nitrogen fixation protein NifZ |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_5899: Nitrogen fixation protein NifZ Gene: BBta_5898: Nitrogen fixation protein NifZ |
|
Gene: mll5854: Nitrogen fixation protein NifZ |
|
|
|
|
Gene: NGR_a01290: Nitrogen fixation protein NifZ |
2
Rhodopseudomonas palustris CGA009 Gene: RPA4625: Nitrogen fixation protein NifZ Gene: RPA4624: Nitrogen fixation protein NifZ |
|
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0116: Nitrogen fixation protein NifZ Gene: Xaut_0117: Nitrogen fixation protein NifZ |
Nitrogen fixation protein NifZ |
| nifT |
|
Gene: AZC_3412: Nitrogen fixation protein NifT |
|
Gene: bsr1757: Nitrogen fixation protein NifT |
Gene: BBta_5906: Nitrogen fixation protein NifT |
|
Gene: msl5852: Nitrogen fixation protein NifT |
|
|
|
|
Gene: NGR_a01300: Nitrogen fixation protein NifT |
Gene: RPA4623: Nitrogen fixation protein NifT |
Gene: SMa0810: Nitrogen fixation protein NifT |
Gene: Xaut_0109: Nitrogen fixation protein NifT |
Nitrogen fixation protein NifT |
| irr |
|
Gene: AZC_3445: Iron-responsive regulator Irr, Fur family |
|
Gene: blr1216: Iron-responsive regulator Irr, Fur family |
Gene: BBta_5877: Iron-responsive regulator Irr, Fur family |
|
|
|
|
|
|
|
|
|
|
Iron-responsive regulator Irr, Fur family |
| nifV |
|
Gene: AZC_3389: Homocitrate synthase (EC 2.3.3.14) |
|
|
Gene: BBta_5875: Homocitrate synthase (EC 2.3.3.14) |
|
|
|
|
|
|
|
Gene: RPA4607: Homocitrate synthase (EC 2.3.3.14) |
|
Gene: Xaut_0150: Homocitrate synthase (EC 2.3.3.14) |
Homocitrate synthase (EC 2.3.3.14) |
| nifP |
|
Gene: AZC_3388: Serine acetyltransferase (EC 2.3.1.30) |
|
|
Gene: BBta_5874: Serine acetyltransferase (EC 2.3.1.30) |
|
|
|
|
|
|
|
|
|
Gene: Xaut_0151: Serine acetyltransferase (EC 2.3.1.30) |
Serine acetyltransferase (EC 2.3.1.30) |
| nifW |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -192 score = 4.11279 sequence = TGTCGCCTTCGGGGCA Gene: AZC_3446: Nitrogenase stabilizing/protective protein NifW |
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -495 score = 4.29964 sequence = TGTCGCATTTGCCACG Gene: blr1771: Nitrogenase stabilizing/protective protein NifW |
Gene: BBta_5873: Nitrogenase stabilizing/protective protein NifW |
|
Gene: mll5864: Nitrogenase stabilizing/protective protein NifW |
|
|
Gene: RHE_PD00223: Nitrogenase stabilizing/protective protein NifW |
|
Gene: NGR_a00940: Nitrogenase stabilizing/protective protein NifW |
Gene: RPA4606: Nitrogenase stabilizing/protective protein NifW |
|
Gene: Xaut_0152: Nitrogenase stabilizing/protective protein NifW |
Nitrogenase stabilizing/protective protein NifW |
| fixB |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -113 score = 4.22686 sequence = TGTGGCATGCCAGACA Site: position = -179 score = 5.02419 sequence = TGTCGCATTCCCGACG Gene: AZC_3447: Electron transfer flavoprotein, beta subunit |
|
Gene: blr2038: Electron transfer flavoprotein, beta subunit |
*
Bradyrhizobium sp. BTAi1 Site: position = -171 score = 5.02419 sequence = TGTCGCATTCCCGACG Gene: BBta_5872: Electron transfer flavoprotein, beta subunit |
|
*
Mesorhizobium loti MAFF303099 Site: position = -161 score = 5.24137 sequence = TGTCGAAAAGCCGACA Gene: mll5862: Electron transfer flavoprotein, beta subunit |
|
|
*
Rhizobium etli CFN 42 Site: position = -156 score = 4.59353 sequence = TGTCGGGAAGCTTACA Gene: RHE_PD00224: Electron transfer flavoprotein, beta subunit |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -148 score = 4.89893 sequence = TGTCGGCAACCCTACA Gene: pRL100200: Electron transfer flavoprotein, beta subunit |
*
Rhizobium sp. NGR234 Site: position = -162 score = 4.76202 sequence = TGTCATGAAGCCGACA Gene: NGR_a01220: Electron transfer flavoprotein, beta subunit |
*
Rhodopseudomonas palustris CGA009 Site: position = -184 score = 5.48724 sequence = TGTCGCCTTCCCGACA Gene: RPA4605: Electron transfer flavoprotein, beta subunit |
*
Sinorhizobium meliloti 1021 Site: position = -244 score = 4.86295 sequence = TGTCGGCCCCTCGACA Gene: SMa0822: Electron transfer flavoprotein, beta subunit |
*
Xanthobacter autotrophicus Py2 Site: position = -262 score = 4.17006 sequence = CGTCGCAATTGTGACG Site: position = -180 score = 5.18183 sequence = TGTCGCCTTCCTGACA Gene: Xaut_0142: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| fixA |
|
Gene: AZC_3448: Electron transfer flavoprotein, alpha subunit |
|
Gene: blr1773: Electron transfer flavoprotein, alpha subunit |
Gene: BBta_5871: Electron transfer flavoprotein, alpha subunit |
|
Gene: mll5861: Electron transfer flavoprotein, alpha subunit |
|
|
Gene: RHE_PD00225: Electron transfer flavoprotein, alpha subunit |
Gene: pRL100199: Electron transfer flavoprotein, alpha subunit |
Gene: NGR_a01230: Electron transfer flavoprotein, alpha subunit |
Gene: RPA4604: Electron transfer flavoprotein, alpha subunit |
Gene: SMa0819: Electron transfer flavoprotein, alpha subunit |
Gene: Xaut_0141: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| fixC |
|
Gene: AZC_3449: Electron-transferring-flavoprotein dehydrogenase |
|
Gene: blr1774: Electron-transferring-flavoprotein dehydrogenase |
Gene: BBta_5870: Electron-transferring-flavoprotein dehydrogenase |
|
Gene: mll5860: Electron-transferring-flavoprotein dehydrogenase |
|
|
Gene: RHE_PD00226: Electron-transferring-flavoprotein dehydrogenase |
Gene: pRL100198: Electron-transferring-flavoprotein dehydrogenase |
Gene: NGR_a01240: Electron-transferring-flavoprotein dehydrogenase |
Gene: RPA4603: Electron-transferring-flavoprotein dehydrogenase |
Gene: SMa0817: Electron-transferring-flavoprotein dehydrogenase |
Gene: Xaut_0140: Electron-transferring-flavoprotein dehydrogenase |
Electron-transferring-flavoprotein dehydrogenase |
| fixX |
|
Gene: AZC_3450: Ferredoxin-like protein, FixX |
|
Gene: bsr1775: Ferredoxin-like protein, FixX |
Gene: BBta_5869: Ferredoxin-like protein, FixX |
|
Gene: msl5859: Ferredoxin-like protein, FixX |
|
|
Gene: RHE_PD00227: Ferredoxin-like protein, FixX |
Gene: pRL100197: Ferredoxin-like protein, FixX |
Gene: NGR_a01250: Ferredoxin-like protein, FixX |
Gene: RPA4602: Ferredoxin-like protein, FixX |
Gene: SMa0816: Ferredoxin-like protein, FixX |
Gene: Xaut_0139: Ferredoxin-like protein, FixX |
Ferredoxin-like protein, FixX |
| nifA |
|
Gene: AZC_1049: Nitrogen fixation transcriptional regulator NifA, Fis family |
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -39 score = 3.84948 sequence = TGTCATCTCGTCAACA Gene: blr2037: Nitrogen fixation transcriptional regulator NifA, Fis family |
*
Bradyrhizobium sp. BTAi1 Site: position = -64 score = 4.03687 sequence = TGTTAGAACGCCTACA Gene: BBta_5933: Nitrogen fixation transcriptional regulator NifA, Fis family |
|
2
Mesorhizobium loti MAFF303099 Gene: mll5837: Nitrogen fixation transcriptional regulator NifA, Fis family Gene: mll5857: Nitrogen fixation transcriptional regulator NifA, Fis family |
|
|
Gene: RHE_PD00228: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: pRL100196: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: NGR_a01260: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: RPA4632: Nitrogen fixation transcriptional regulator NifA, Fis family |
Gene: SMa0815: Nitrogen fixation transcriptional regulator NifA, Fis family |
*
Xanthobacter autotrophicus Py2 Site: position = -56 score = 4.05681 sequence = TGTCGCTAATCATACA Gene: Xaut_0082: Nitrogen fixation transcriptional regulator NifA, Fis family |
Nitrogen fixation transcriptional regulator NifA, Fis family |
| iscN |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -116 score = 4.33203 sequence = GGTCTGCTTCGCGACA Site: position = -134 score = 5.48508 sequence = TGTCGCAAAGGCGACA Gene: AZC_3409: Fe-S cofactor nitrogenase synthesis protein IscN |
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -116 score = 5.24541 sequence = TGTCAGGAACCCGACA Gene: blr1755: Fe-S cofactor nitrogenase synthesis protein IscN |
*
Bradyrhizobium sp. BTAi1 Site: position = -112 score = 4.3018 sequence = CGTCGGAAACGCCACA Site: position = -190 score = 4.84525 sequence = TGTCGGATTTGCGCCA Site: position = -130 score = 5.24137 sequence = TGTCGGAAAGTCGACA Gene: BBta_5909: Fe-S cofactor nitrogenase synthesis protein IscN |
|
*
Mesorhizobium loti MAFF303099 Site: position = -115 score = 4.56125 sequence = TGTTGGATGTGAGACA Site: position = -133 score = 4.84352 sequence = TGTCCGACATCCGACA Gene: mll5942: Fe-S cofactor nitrogenase synthesis protein IscN |
|
|
|
|
*
Rhizobium sp. NGR234 Site: position = -114 score = 4.05391 sequence = TGTCGTACAAACGACA Gene: NGR_a01210: Fe-S cofactor nitrogenase synthesis protein IscN |
*
Rhodopseudomonas palustris CGA009 Site: position = -123 score = 5.27521 sequence = TGTCGGACCTCCGACA Site: position = -140 score = 4.01849 sequence = CGTCGGCTTCACGACG Gene: RPA4610: Fe-S cofactor nitrogenase synthesis protein IscN |
|
*2
Xanthobacter autotrophicus Py2 Site: position = -122 score = 5.51223 sequence = TGTCGCATTCGCGACA Gene: Xaut_0149: Fe-S cofactor nitrogenase synthesis protein IscN Site: position = -115 score = 4.11853 sequence = CGTCGCAAAGACAACA Site: position = -133 score = 4.3844 sequence = TGTCCGGAATCGGACA Gene: Xaut_0106: Fe-S cofactor nitrogenase synthesis protein IscN |
Fe-S cofactor nitrogenase synthesis protein IscN |
| nifU |
|
Gene: AZC_3410: Iron-sulfur cluster assembly scaffold protein NifU |
|
|
Gene: BBta_5908: Iron-sulfur cluster assembly scaffold protein NifU |
|
|
|
|
Gene: RHE_PD00221: Iron-sulfur cluster assembly scaffold protein NifU |
|
|
Gene: RPA4609: Iron-sulfur cluster assembly scaffold protein NifU |
|
Gene: Xaut_0107: Iron-sulfur cluster assembly scaffold protein NifU |
Iron-sulfur cluster assembly scaffold protein NifU |
| nifS |
|
Gene: AZC_3411: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
|
Gene: blr1756: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
Gene: BBta_5907: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
|
Gene: mll5865: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
|
|
Gene: RHE_PD00222: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
|
*
Rhizobium sp. NGR234 Site: position = -282 score = 3.77786 sequence = TCGCGCGAGGGCGACA Gene: NGR_a00930: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
Gene: RPA4608: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
|
Gene: Xaut_0108: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
| orf110 |
|
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|
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|
*
Sinorhizobium meliloti 1021 Site: position = -194 score = 5.06243 sequence = TGTCAGGTCCGCGACA Gene: SMa0872: Hypothetical protein ORF 110 |
|
Hypothetical protein ORF 110 |
| CRON 7. | ||||||||||||||||
| fixR |
|
|
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -126 score = 3.93082 sequence = TGTCTTGAATGCGCCA Site: position = -106 score = 3.82711 sequence = TTCCGCGTGCGCGACA Gene: blr2036: Oxidoreductase, short chain dehydrogenase/reductase family |
*
Bradyrhizobium sp. BTAi1 Site: position = -151 score = 5.09242 sequence = TGTCGTGAATGCGACA Gene: BBta_5935: Oxidoreductase, short chain dehydrogenase/reductase family |
|
|
|
|
|
|
|
*
Rhodopseudomonas palustris CGA009 Site: position = -161 score = 4.57477 sequence = TGTCGCAAAGCCAACG Site: position = -118 score = 3.69392 sequence = TGTCGTTGTGATGACA Gene: RPA4633: Oxidoreductase, short chain dehydrogenase/reductase family |
|
|
Oxidoreductase, short chain dehydrogenase/reductase family |
| CRON 8. | ||||||||||||||||
| cpxP |
|
|
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -265 score = 4.00506 sequence = TATGGCGATGCCGACA Gene: blr2144: Cytochrome P450 protein CpxP |
|
|
*
Mesorhizobium loti MAFF303099 Site: position = -331 score = 3.62019 sequence = TGTCAAATCCGCATCA Gene: mlr6364: Cytochrome P450 protein CpxP |
|
|
Gene: RHE_PD00252: Cytochrome P450 protein CpxP |
|
*
Rhizobium sp. NGR234 Site: position = -183 score = 5.33141 sequence = TGTCGCGTCCGCGACA Gene: NGR_a02700: Cytochrome P450 protein CpxP |
|
|
|
Cytochrome P450 protein CpxP |
| cpxR |
|
|
|
Gene: blr2145: Putative cytochrome P450 hydroxylase |
|
|
Gene: mlr6365: Putative cytochrome P450 hydroxylase |
|
|
Gene: RHE_PD00251: Putative cytochrome P450 hydroxylase |
|
Gene: NGR_a02710: Putative cytochrome P450 hydroxylase |
|
|
|
Putative cytochrome P450 hydroxylase |
| CRON 9. | ||||||||||||||||
| cpx1 |
|
|
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -129 score = 4.3442 sequence = TGTCGGCATTGAGACT Site: position = -110 score = 4.2366 sequence = TGCCAGAAACCTGACA Gene: blr2143: Cytochrome P450-family protein |
|
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|
|
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|
|
|
Cytochrome P450-family protein |
| CRON 10. | ||||||||||||||||
| rpoN |
Gene: Atu0332: RNA polymerase sigma-54 factor RpoN |
Gene: AZC_3925: RNA polymerase sigma-54 factor RpoN |
|
*2
Bradyrhizobium japonicum USDA 110 Site: position = -376 score = 4.19126 sequence = TGTCTGAGTGGCGGCA Gene: blr1883: RNA polymerase sigma-54 factor RpoN Gene: blr0723: RNA polymerase sigma-54 factor RpoN |
*
Bradyrhizobium sp. BTAi1 Site: position = -184 score = 4.86268 sequence = TGTCGCGGGTGTGACA Gene: BBta_0121: RNA polymerase sigma-54 factor RpoN |
Gene: BMEI1789: RNA polymerase sigma-54 factor RpoN |
2
Mesorhizobium loti MAFF303099 Gene: mll3196: RNA polymerase sigma-54 factor RpoN Gene: mll5872: RNA polymerase sigma-54 factor RpoN |
Gene: Meso_3667: RNA polymerase sigma-54 factor RpoN |
Gene: Nwi_0177: RNA polymerase sigma-54 factor RpoN |
2
Rhizobium etli CFN 42 Gene: RHE_CH00404: RNA polymerase sigma-54 factor RpoN Gene: RHE_PD00218: RNA polymerase sigma-54 factor RpoN |
Gene: RL0422: RNA polymerase sigma-54 factor RpoN |
Gene: NGR_c00170: RNA polymerase sigma-54 factor RpoN |
Gene: RPA0050: RNA polymerase sigma-54 factor RpoN |
Gene: SMc01139: RNA polymerase sigma-54 factor RpoN |
Gene: Xaut_0064: RNA polymerase sigma-54 factor RpoN |
RNA polymerase sigma-54 factor RpoN |
| CRON 11. | ||||||||||||||||
| fer2 |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -67 score = 3.78087 sequence = TGTGGGGCCTCCGGCA Gene: AZC_0303: Ferredoxin, 2Fe-2S (AaFd4) |
|
Gene: blr1765: Ferredoxin, 2Fe-2S (AaFd4) |
*
Bradyrhizobium sp. BTAi1 Site: position = -325 score = 3.63791 sequence = TGTCGACATCCGAACG Gene: BBta_5882: Ferredoxin, 2Fe-2S (AaFd4) |
|
|
|
|
|
|
|
|
|
*
Xanthobacter autotrophicus Py2 Site: position = -163 score = 3.60222 sequence = TGTCGCTTTCCCGCCC Gene: Xaut_2332: Ferredoxin, 2Fe-2S (AaFd4) |
Ferredoxin, 2Fe-2S (AaFd4) |
| CRON 12. | ||||||||||||||||
| xdhC |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -190 score = 4.28867 sequence = TGTCGGGAACCCGCCG Site: position = -235 score = 5.55794 sequence = TGTCGGCTTTCCGACA Gene: AZC_1052: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
|
|
*
Bradyrhizobium sp. BTAi1 Site: position = -255 score = 5.09242 sequence = TGTCGCATTCACGACA Gene: BBta_5936: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
|
|
|
|
|
|
|
*
Rhodopseudomonas palustris CGA009 Site: position = -111 score = 4.57477 sequence = CGTTGGCTTTGCGACA Gene: RPA4634: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
|
*
Xanthobacter autotrophicus Py2 Site: position = -74 score = 5.06116 sequence = TGTCGCAAAGGAGACA Gene: Xaut_0125: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
| CRON 13. | ||||||||||||||||
| cheY |
|
*
Azorhizobium caulinodans ORS 571 Site: position = -192 score = 4.78506 sequence = TGTCTCGAACCTGACA Site: position = -163 score = 4.25305 sequence = TGTTGGAAAGGAAACA Gene: AZC_3442: Predicted response regulator receiver protein |
|
|
*
Bradyrhizobium sp. BTAi1 Site: position = -168 score = 5.12639 sequence = TGTTGCAAACCCGACA Gene: BBta_5880: Predicted response regulator receiver protein |
|
|
|
|
|
|
|
*
Rhodopseudomonas palustris CGA009 Site: position = -147 score = 4.51197 sequence = TGTCAGGTTTGCGACC Gene: RPA1001: Predicted response regulator receiver protein |
|
Gene: Xaut_0144: Predicted response regulator receiver protein |
Predicted response regulator receiver protein |
| nifO |
|
Gene: AZC_3441: Nitrogenase-associated protein NifO |
|
Gene: bll1767: Nitrogenase-associated protein NifO |
Gene: BBta_5881: Nitrogenase-associated protein NifO |
|
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Gene: RPA1000: Nitrogenase-associated protein NifO |
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Gene: Xaut_0145: Nitrogenase-associated protein NifO |
Nitrogenase-associated protein NifO |
| CRON 14. | ||||||||||||||||
| ahpC1 |
Gene: Atu2399: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
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Gene: BQ10800: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
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Mesorhizobium loti MAFF303099 Site: position = -482 score = 4.09013 sequence = GGTCCGACTTCCGACA Site: position = -462 score = 3.87024 sequence = TGTCCAGCTTCGGACA Gene: mll5873: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
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Rhizobium etli CFN 42 Site: position = -407 score = 3.69774 sequence = TGTCGGACCTCAAACT Gene: RHE_PD00217: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
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*2
Rhizobium sp. NGR234 Site: position = -273 score = 4.9041 sequence = TGTCGGAAGGACGACA Site: position = -245 score = 5.10598 sequence = TGTCGGCTCTCTGACA Gene: NGR_a01200: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) Gene: NGR_c24970: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
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Gene: SMc01834: Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
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Alkyl hydroperoxide reductase protein (EC 1.6.4.-) |
| CRON 15. | ||||||||||||||||
| bolA |
Gene: Atu1851: BolA protein, predicted transcription regulator |
*2
Azorhizobium caulinodans ORS 571 Gene: AZC_2232: BolA protein, predicted transcription regulator Site: position = -128 score = 5.37101 sequence = TGTCGCATGTGCGACA Site: position = -121 score = 4.0847 sequence = TGTGCGACATGCGACA Gene: AZC_3437: BolA protein, predicted transcription regulator |
Gene: BQ07510: BolA protein, predicted transcription regulator |
Gene: bsl5715: BolA protein, predicted transcription regulator |
*2
Bradyrhizobium sp. BTAi1 Site: position = -139 score = 4.96062 sequence = TGTCGCAAAGGCGACG Gene: BBta_5884: BolA protein, predicted transcription regulator Gene: BBta_5397: BolA protein, predicted transcription regulator |
Gene: BMEI1128: BolA protein, predicted transcription regulator |
Gene: msl0055: BolA protein, predicted transcription regulator |
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Gene: Nwi_1309: BolA protein, predicted transcription regulator |
Gene: RHE_CH02287: BolA protein, predicted transcription regulator |
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Gene: RPA1600: BolA protein, predicted transcription regulator |
Gene: SMc00487: BolA protein, predicted transcription regulator |
*2
Xanthobacter autotrophicus Py2 Site: position = -103 score = 5.06116 sequence = TGTCTCCTTTGCGACA Gene: Xaut_0124: BolA protein, predicted transcription regulator Gene: Xaut_4089: BolA protein, predicted transcription regulator |
BolA protein, predicted transcription regulator |
| grlA |
Gene: Atu1854: Glutaredoxin-related protein |
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Azorhizobium caulinodans ORS 571 Gene: AZC_2234: Glutaredoxin-related protein Gene: AZC_3438: Glutaredoxin-related protein |
Gene: BQ07520: Glutaredoxin-related protein |
Gene: bll5711: Glutaredoxin-related protein |
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Bradyrhizobium sp. BTAi1 Gene: BBta_5883: Glutaredoxin-related protein Gene: BBta_5393: Glutaredoxin-related protein |
Gene: BMEI1129: Glutaredoxin-related protein |
Gene: mll0053: Glutaredoxin-related protein |
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Nitrobacter winogradskyi Nb-255 Site: position = -112 score = 3.61453 sequence = TGTGACAACCCCGGCA Gene: Nwi_1312: Glutaredoxin-related protein |
Gene: RHE_CH02304: Glutaredoxin-related protein |
Gene: RL2615: Glutaredoxin-related protein |
Gene: NGR_c16290: Glutaredoxin-related protein |
Gene: RPA1606: Glutaredoxin-related protein |
Gene: SMc00538: Glutaredoxin-related protein |
2
Xanthobacter autotrophicus Py2 Gene: Xaut_0123: Glutaredoxin-related protein Gene: Xaut_4088: Glutaredoxin-related protein |
Glutaredoxin-related protein |
| CRON 16. | ||||||||||||||||
| ahpC |
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Azorhizobium caulinodans ORS 571 Site: position = -161 score = 5.55794 sequence = TGTCGGAAAGCCGACA Site: position = -206 score = 4.28867 sequence = CGGCGGGTTCCCGACA Gene: AZC_1051: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
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Gene: bll1777: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
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Bradyrhizobium sp. BTAi1 Site: position = -105 score = 5.24137 sequence = TGTCGACTTTCCGACA Gene: BBta_5863: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: BMEII0577: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
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Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
| ahpD |
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Gene: AZC_1050: Alkylhydroperoxidase protein D |
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Gene: bll1776: Alkylhydroperoxidase protein D |
Gene: BBta_5864: Alkylhydroperoxidase protein D |
Gene: BMEII0578: Alkylhydroperoxidase protein D |
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Alkylhydroperoxidase protein D |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |