Regulon of NifA in Bradyrhizobium sp. BTAi1

Properties
Regulator type:	Transcription factor
TF locus tag:	BBta_5933
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen fixation
Effector:
Regulog:	NifA - Rhizobiales
Statistics of regulated genes:
- Genes	45
- Operons	15
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NifA
By TF family - Fis
By pathway - Nitrogen fixation

Regulated operons
	Locus Tag	Name	Function
Position: -139 Score: 5 Sequence: TGTCGCAAAGGCGACG Locus tag: BBta_5884 Name: bolA Funciton: BolA protein, predicted transcription regulator Locus tag: BBta_5883 Name: grlA Funciton: Glutaredoxin-related protein
	BBta_5884	bolA	BolA protein, predicted transcription regulator
	BBta_5883	grlA	Glutaredoxin-related protein
Position: -325 Score: 3.6 Sequence: TGTCGACATCCGAACG Locus tag: BBta_5882 Name: fer2 Funciton: Ferredoxin, 2Fe-2S (AaFd4)
	BBta_5882	fer2	Ferredoxin, 2Fe-2S (AaFd4)
Position: -168 Score: 5.1 Sequence: TGTTGCAAACCCGACA Locus tag: BBta_5880 Name: cheY Funciton: Predicted response regulator receiver protein Locus tag: BBta_5881 Name: nifO Funciton: Nitrogenase-associated protein NifO
	BBta_5880	cheY	Predicted response regulator receiver protein
	BBta_5881	nifO	Nitrogenase-associated protein NifO
Position: -255 Score: 5.1 Sequence: TGTCGCATTCACGACA Locus tag: BBta_5936 Name: xdhC Funciton: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
	BBta_5936	xdhC	Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
Position: -171 Score: 5 Sequence: TGTCGCATTCCCGACG Locus tag: BBta_5872 Name: fixB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: BBta_5871 Name: fixA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: BBta_5870 Name: fixC Funciton: Electron-transferring-flavoprotein dehydrogenase Locus tag: BBta_5869 Name: fixX Funciton: Ferredoxin-like protein, FixX
	BBta_5872	fixB	Electron transfer flavoprotein, beta subunit
	BBta_5871	fixA	Electron transfer flavoprotein, alpha subunit
	BBta_5870	fixC	Electron-transferring-flavoprotein dehydrogenase
	BBta_5869	fixX	Ferredoxin-like protein, FixX
Position: -267 Score: 5.1 Sequence: TGTCGGGTTTGCAACA Locus tag: BBta_5879 Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Locus tag: BBta_5878 Name: nifQ Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ Locus tag: BBta_5877 Name: irr Funciton: Iron-responsive regulator Irr, Fur family Locus tag: BBta_5875 Name: nifV Funciton: Homocitrate synthase (EC 2.3.3.14) Locus tag: BBta_5874 Name: nifP Funciton: Serine acetyltransferase (EC 2.3.1.30) Locus tag: BBta_5873 Name: nifW Funciton: Nitrogenase stabilizing/protective protein NifW
	BBta_5879	nifH	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
	BBta_5878	nifQ	Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
	BBta_5877	irr	Iron-responsive regulator Irr, Fur family
	BBta_5875	nifV	Homocitrate synthase (EC 2.3.3.14)
	BBta_5874	nifP	Serine acetyltransferase (EC 2.3.1.30)
	BBta_5873	nifW	Nitrogenase stabilizing/protective protein NifW
Position: -160 Score: 5.4 Sequence: TGTCGCATCTGCGACA Position: -141 Score: 4.9 Sequence: TGTCGGGAGAGCGACA Locus tag: BBta_5932 Name: fdxN Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
	BBta_5932	fdxN	4Fe-4S ferredoxin, nitrogenase-associated
Position: -64 Score: 4 Sequence: TGTTAGAACGCCTACA Locus tag: BBta_5933 Name: nifA Funciton: Nitrogen fixation transcriptional regulator NifA, Fis family
	BBta_5933	nifA	Nitrogen fixation transcriptional regulator NifA, Fis family
Position: -262 Score: 5.1 Sequence: TGTCGGGTTTGCAACA Locus tag: BBta_5925 Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Locus tag: BBta_5924 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Locus tag: BBta_5923 Name: nifK Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) Locus tag: BBta_5922 Name: nifE Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE Locus tag: BBta_5921 Name: nifN Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN Locus tag: BBta_5920 Name: nifX Funciton: Nitrogenase FeMo-cofactor carrier protein NifX Locus tag: BBta_5919 Name: PF03270 Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein Locus tag: BBta_5918 Name: PF05082 Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein Locus tag: BBta_5917 Name: fdxB Funciton: Nitrogenase specific ferredoxin III protein FdxB
	BBta_5925	nifH	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
	BBta_5924	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	BBta_5923	nifK	Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
	BBta_5922	nifE	Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
	BBta_5921	nifN	Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
	BBta_5920	nifX	Nitrogenase FeMo-cofactor carrier protein NifX
	BBta_5919	PF03270	Conserved hypothetical protein, probably related to nitrogen fixation protein
	BBta_5918	PF05082	Conserved hypothetical protein, probably related to nitrogen fixation protein
	BBta_5917	fdxB	Nitrogenase specific ferredoxin III protein FdxB
Position: -184 Score: 4.9 Sequence: TGTCGCGGGTGTGACA Locus tag: BBta_0121 Name: rpoN Funciton: RNA polymerase sigma-54 factor RpoN
	BBta_0121	rpoN	RNA polymerase sigma-54 factor RpoN
Position: -141 Score: 5 Sequence: TGTTGGCAAGGCGACA Locus tag: BBta_5904 Name: nifB Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB Locus tag: BBta_5903 Name: frxA Funciton: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis Locus tag: BBta_5902 Name: hesB Funciton: probable iron binding protein from the HesB_IscA_SufA family in Nif operon Locus tag: BBta_5901 Name: RPA4627 Funciton: Conserved hypothetical protein, associated with nitrogen fixation genes Locus tag: BBta_5900 Name: PF05484 Funciton: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis Locus tag: BBta_5899 Name: nifZ Funciton: Nitrogen fixation protein NifZ Locus tag: BBta_5898 Name: nifZ Funciton: Nitrogen fixation protein NifZ
	BBta_5904	nifB	Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
	BBta_5903	frxA	2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
	BBta_5902	hesB	probable iron binding protein from the HesB_IscA_SufA family in Nif operon
	BBta_5901	RPA4627	Conserved hypothetical protein, associated with nitrogen fixation genes
	BBta_5900	PF05484	LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
	BBta_5899	nifZ	Nitrogen fixation protein NifZ
	BBta_5898	nifZ	Nitrogen fixation protein NifZ
Position: -224 Score: 4.1 Sequence: CGTTGTGTTTGCGACA Position: -193 Score: 4.1 Sequence: TGTCGAAAGTCGAACA Locus tag: BBta_2080 Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1) Locus tag: BBta_2079 Name: modB Funciton: Molybdate ABC transporter, permease protein Locus tag: BBta_2078 Name: modC Funciton: Molybdate ABC transporter, ATP-binding protein
	BBta_2080	modA	Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1)
	BBta_2079	modB	Molybdate ABC transporter, permease protein
	BBta_2078	modC	Molybdate ABC transporter, ATP-binding protein
Position: -190 Score: 4.8 Sequence: TGTCGGATTTGCGCCA Position: -130 Score: 5.2 Sequence: TGTCGGAAAGTCGACA Position: -112 Score: 4.3 Sequence: CGTCGGAAACGCCACA Locus tag: BBta_5909 Name: iscN Funciton: Fe-S cofactor nitrogenase synthesis protein IscN Locus tag: BBta_5908 Name: nifU Funciton: Iron-sulfur cluster assembly scaffold protein NifU Locus tag: BBta_5907 Name: nifS Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily Locus tag: BBta_5906 Name: nifT Funciton: Nitrogen fixation protein NifT
	BBta_5909	iscN	Fe-S cofactor nitrogenase synthesis protein IscN
	BBta_5908	nifU	Iron-sulfur cluster assembly scaffold protein NifU
	BBta_5907	nifS	Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
	BBta_5906	nifT	Nitrogen fixation protein NifT
Position: -151 Score: 5.1 Sequence: TGTCGTGAATGCGACA Locus tag: BBta_5935 Name: fixR Funciton: Oxidoreductase, short chain dehydrogenase/reductase family
	BBta_5935	fixR	Oxidoreductase, short chain dehydrogenase/reductase family
Position: -105 Score: 5.2 Sequence: TGTCGACTTTCCGACA Locus tag: BBta_5863 Name: ahpC Funciton: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Locus tag: BBta_5864 Name: ahpD Funciton: Alkylhydroperoxidase protein D
	BBta_5863	ahpC	Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
	BBta_5864	ahpD	Alkylhydroperoxidase protein D

Export
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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NifA in Bradyrhizobium sp. BTAi1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --