Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Rhodopseudomonas palustris CGA009

Properties
Regulator type: Transcription factor
TF locus tag: RPA4632
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhizobiales
Statistics of regulated genes:
- Genes 38
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 130 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -202
Score: 3.7
Sequence: TGTCAGCGCCGCAACC
Locus tag: RPA0962
Name: hupS
Funciton: Uptake hydrogenase small subunit precursor (EC 1.12.99.6)
Locus tag: RPA0963
Name: hupL
Funciton: Uptake hydrogenase large subunit (EC 1.12.99.6)
Locus tag: RPA0964
Name: hupC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
RPA0962
hupS
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)
RPA0963
hupL
Uptake hydrogenase large subunit (EC 1.12.99.6)
RPA0964
hupC
Ni,Fe-hydrogenase I cytochrome b subunit
Position: -223
Score: 4.4
Sequence: TGTCAGATTCACAACA
Position: -198
Score: 4.5
Sequence: TGTCGGATTTTTGACG
Locus tag: RPA1373
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: RPA1372
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: RPA1371
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
RPA1373
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
RPA1372
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
RPA1371
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
Position: -184
Score: 5.5
Sequence: TGTCGCCTTCCCGACA
Locus tag: RPA4605
Name: fixB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: RPA4604
Name: fixA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: RPA4603
Name: fixC
Funciton: Electron-transferring-flavoprotein dehydrogenase
Locus tag: RPA4602
Name: fixX
Funciton: Ferredoxin-like protein, FixX
RPA4605
fixB
Electron transfer flavoprotein, beta subunit
RPA4604
fixA
Electron transfer flavoprotein, alpha subunit
RPA4603
fixC
Electron-transferring-flavoprotein dehydrogenase
RPA4602
fixX
Ferredoxin-like protein, FixX
Position: -140
Score: 4
Sequence: CGTCGGCTTCACGACG
Position: -123
Score: 5.3
Sequence: TGTCGGACCTCCGACA
Locus tag: RPA4610
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: RPA4609
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: RPA4608
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: RPA4607
Name: nifV
Funciton: Homocitrate synthase (EC 2.3.3.14)
Locus tag: RPA4606
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
RPA4610
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
RPA4609
nifU
Iron-sulfur cluster assembly scaffold protein NifU
RPA4608
nifS
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
RPA4607
nifV
Homocitrate synthase (EC 2.3.3.14)
RPA4606
nifW
Nitrogenase stabilizing/protective protein NifW
Position: -252
Score: 4.4
Sequence: TGTCGGATTCTAAACA
Locus tag: RPA4620
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: RPA4619
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: RPA4618
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: RPA4617
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: RPA4616
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: RPA4615
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: RPA4614
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: RPA4613
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: RPA4612
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: RPA4611
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
RPA4620
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
RPA4619
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
RPA4618
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
RPA4617
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
RPA4616
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
RPA4615
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
RPA4614
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
RPA4613
PF05082
Conserved hypothetical protein, probably related to nitrogen fixation protein
RPA4612
fdxB
Nitrogenase specific ferredoxin III protein FdxB
RPA4611
nifQ
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
Position: -147
Score: 5.1
Sequence: TGTCAGACTTGCGACA
Position: -129
Score: 4.3
Sequence: TGTCGGGGGCCTTACA
Locus tag: RPA4631
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: RPA4630
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: RPA4629
Name: frxA
Funciton: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
Locus tag: RPA4628
Name: hesB
Funciton: probable iron binding protein from the HesB_IscA_SufA family in Nif operon
Locus tag: RPA4627
Name: RPA4627
Funciton: Conserved hypothetical protein, associated with nitrogen fixation genes
Locus tag: RPA4626
Name: PF05484
Funciton: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
Locus tag: RPA4625
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: RPA4624
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: RPA4623
Name: nifT
Funciton: Nitrogen fixation protein NifT
RPA4631
fdxN
4Fe-4S ferredoxin, nitrogenase-associated
RPA4630
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
RPA4629
frxA
2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
RPA4628
hesB
probable iron binding protein from the HesB_IscA_SufA family in Nif operon
RPA4627
RPA4627
Conserved hypothetical protein, associated with nitrogen fixation genes
RPA4626
PF05484
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
RPA4625
nifZ
Nitrogen fixation protein NifZ
RPA4624
nifZ
Nitrogen fixation protein NifZ
RPA4623
nifT
Nitrogen fixation protein NifT
Position: -111
Score: 4.6
Sequence: CGTTGGCTTTGCGACA
Locus tag: RPA4634
Name: xdhC
Funciton: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
RPA4634
xdhC
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
Position: -147
Score: 4.5
Sequence: TGTCAGGTTTGCGACC
Locus tag: RPA1001
Name: cheY
Funciton: Predicted response regulator receiver protein
Locus tag: RPA1000
Name: nifO
Funciton: Nitrogenase-associated protein NifO
RPA1001
cheY
Predicted response regulator receiver protein
RPA1000
nifO
Nitrogenase-associated protein NifO
Position: -161
Score: 4.6
Sequence: TGTCGCAAAGCCAACG
Position: -118
Score: 3.7
Sequence: TGTCGTTGTGATGACA
Locus tag: RPA4633
Name: fixR
Funciton: Oxidoreductase, short chain dehydrogenase/reductase family
RPA4633
fixR
Oxidoreductase, short chain dehydrogenase/reductase family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise