Regulon of NifA in Xanthobacter autotrophicus Py2

Properties
Regulator type:	Transcription factor
TF locus tag:	Xaut_0082
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen fixation
Effector:
Regulog:	NifA - Rhizobiales
Statistics of regulated genes:
- Genes	36
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NifA
By TF family - Fis
By pathway - Nitrogen fixation

Regulated operons
	Locus Tag	Name	Function
Position: -163 Score: 3.6 Sequence: TGTCGCTTTCCCGCCC Locus tag: Xaut_2332 Name: fer2 Funciton: Ferredoxin, 2Fe-2S (AaFd4)
	Xaut_2332	fer2	Ferredoxin, 2Fe-2S (AaFd4)
Position: -122 Score: 5.5 Sequence: TGTCGCATTCGCGACA Locus tag: Xaut_0149 Name: iscN Funciton: Fe-S cofactor nitrogenase synthesis protein IscN Locus tag: Xaut_0150 Name: nifV Funciton: Homocitrate synthase (EC 2.3.3.14) Locus tag: Xaut_0151 Name: nifP Funciton: Serine acetyltransferase (EC 2.3.1.30) Locus tag: Xaut_0152 Name: nifW Funciton: Nitrogenase stabilizing/protective protein NifW
	Xaut_0149	iscN	Fe-S cofactor nitrogenase synthesis protein IscN
	Xaut_0150	nifV	Homocitrate synthase (EC 2.3.3.14)
	Xaut_0151	nifP	Serine acetyltransferase (EC 2.3.1.30)
	Xaut_0152	nifW	Nitrogenase stabilizing/protective protein NifW
Position: -358 Score: 4.5 Sequence: CGTCGAACTTGCGACA Position: -233 Score: 4.2 Sequence: TGTCGGGTTCTGAACA Locus tag: Xaut_0088 Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Locus tag: Xaut_0089 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Locus tag: Xaut_0090 Name: nifK Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) Locus tag: Xaut_0091 Name: nifE Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE Locus tag: Xaut_0092 Name: nifN Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN Locus tag: Xaut_0093 Name: nifX Funciton: Nitrogenase FeMo-cofactor carrier protein NifX Locus tag: Xaut_0094 Name: PF03270 Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein Locus tag: Xaut_0095 Name: PF05082 Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein Locus tag: Xaut_0096 Name: fdxB Funciton: Nitrogenase specific ferredoxin III protein FdxB Locus tag: Xaut_0097 Name: nifQ Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
	Xaut_0088	nifH	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
	Xaut_0089	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	Xaut_0090	nifK	Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
	Xaut_0091	nifE	Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
	Xaut_0092	nifN	Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
	Xaut_0093	nifX	Nitrogenase FeMo-cofactor carrier protein NifX
	Xaut_0094	PF03270	Conserved hypothetical protein, probably related to nitrogen fixation protein
	Xaut_0095	PF05082	Conserved hypothetical protein, probably related to nitrogen fixation protein
	Xaut_0096	fdxB	Nitrogenase specific ferredoxin III protein FdxB
	Xaut_0097	nifQ	Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
Position: -133 Score: 4.4 Sequence: TGTCCGGAATCGGACA Position: -115 Score: 4.1 Sequence: CGTCGCAAAGACAACA Locus tag: Xaut_0106 Name: iscN Funciton: Fe-S cofactor nitrogenase synthesis protein IscN Locus tag: Xaut_0107 Name: nifU Funciton: Iron-sulfur cluster assembly scaffold protein NifU Locus tag: Xaut_0108 Name: nifS Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily Locus tag: Xaut_0109 Name: nifT Funciton: Nitrogen fixation protein NifT
	Xaut_0106	iscN	Fe-S cofactor nitrogenase synthesis protein IscN
	Xaut_0107	nifU	Iron-sulfur cluster assembly scaffold protein NifU
	Xaut_0108	nifS	Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
	Xaut_0109	nifT	Nitrogen fixation protein NifT
Position: -284 Score: 4.1 Sequence: TGTCCCCGTGGGGACA Position: -141 Score: 4.2 Sequence: TGTTGTTAAGCCGACA Locus tag: Xaut_0111 Name: nifB Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB Locus tag: Xaut_0112 Name: frxA Funciton: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis Locus tag: Xaut_0113 Name: hesB Funciton: probable iron binding protein from the HesB_IscA_SufA family in Nif operon Locus tag: Xaut_0114 Name: RPA4627 Funciton: Conserved hypothetical protein, associated with nitrogen fixation genes Locus tag: Xaut_0115 Name: PF05484 Funciton: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis Locus tag: Xaut_0116 Name: nifZ Funciton: Nitrogen fixation protein NifZ Locus tag: Xaut_0117 Name: nifZ Funciton: Nitrogen fixation protein NifZ
	Xaut_0111	nifB	Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
	Xaut_0112	frxA	2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
	Xaut_0113	hesB	probable iron binding protein from the HesB_IscA_SufA family in Nif operon
	Xaut_0114	RPA4627	Conserved hypothetical protein, associated with nitrogen fixation genes
	Xaut_0115	PF05484	LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
	Xaut_0116	nifZ	Nitrogen fixation protein NifZ
	Xaut_0117	nifZ	Nitrogen fixation protein NifZ
Position: -301 Score: 4.3 Sequence: TGTTTTAATCCCGACA Position: -271 Score: 4.3 Sequence: TGTCGCGTTCGACACA Locus tag: Xaut_0143 Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
	Xaut_0143	nifH	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Position: -262 Score: 4.2 Sequence: CGTCGCAATTGTGACG Position: -180 Score: 5.2 Sequence: TGTCGCCTTCCTGACA Locus tag: Xaut_0142 Name: fixB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Xaut_0141 Name: fixA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: Xaut_0140 Name: fixC Funciton: Electron-transferring-flavoprotein dehydrogenase Locus tag: Xaut_0139 Name: fixX Funciton: Ferredoxin-like protein, FixX
	Xaut_0142	fixB	Electron transfer flavoprotein, beta subunit
	Xaut_0141	fixA	Electron transfer flavoprotein, alpha subunit
	Xaut_0140	fixC	Electron-transferring-flavoprotein dehydrogenase
	Xaut_0139	fixX	Ferredoxin-like protein, FixX
Position: -148 Score: 5.3 Sequence: TGTCGCACTTGCGACA Locus tag: Xaut_0083 Name: fdxN Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
	Xaut_0083	fdxN	4Fe-4S ferredoxin, nitrogenase-associated
Position: -56 Score: 4.1 Sequence: TGTCGCTAATCATACA Locus tag: Xaut_0082 Name: nifA Funciton: Nitrogen fixation transcriptional regulator NifA, Fis family
	Xaut_0082	nifA	Nitrogen fixation transcriptional regulator NifA, Fis family
Position: -74 Score: 5.1 Sequence: TGTCGCAAAGGAGACA Locus tag: Xaut_0125 Name: xdhC Funciton: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
	Xaut_0125	xdhC	Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
Position: -103 Score: 5.1 Sequence: TGTCTCCTTTGCGACA Locus tag: Xaut_0124 Name: bolA Funciton: BolA protein, predicted transcription regulator Locus tag: Xaut_0123 Name: grlA Funciton: Glutaredoxin-related protein
	Xaut_0124	bolA	BolA protein, predicted transcription regulator
	Xaut_0123	grlA	Glutaredoxin-related protein

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NifA in Xanthobacter autotrophicus Py2

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --