Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing PF05082 gene

Properties
Regulog: NifA - Rhizobiales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Phylum: Proteobacteria/alpha
Built upon 130 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azorhizobium caulinodans ORS 571
Position: -179
Score: 5.02419
Sequence: TGTCGCATTCCCGACG
Position: -113
Score: 4.22686
Sequence: TGTGGCATGCCAGACA
Locus tag: AZC_3447
Name: fixB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: AZC_3448
Name: fixA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: AZC_3449
Name: fixC
Funciton: Electron-transferring-flavoprotein dehydrogenase
Locus tag: AZC_3450
Name: fixX
Funciton: Ferredoxin-like protein, FixX
Locus tag: AZC_3451
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
fixB-fixA-fixC-fixX-PF05082 -179 5 TGTCGCATTCCCGACG AZC_3447
-113 4.2 TGTGGCATGCCAGACA
Bradyrhizobium japonicum USDA 110
Position: -155
Score: 5.12639
Sequence: TGTCGGATTCGCAACA
Locus tag: blr1743
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: blr1744
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: blr1745
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: blr1746
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: blr1747
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: blr1748
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: bsr1749
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: bsr1750
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
nifD-nifK-nifE-nifN-nifX-PF03270-PF05082-fdxB -155 5.1 TGTCGGATTCGCAACA blr1743
Bradyrhizobium sp. BTAi1
Position: -262
Score: 5.12639
Sequence: TGTCGGGTTTGCAACA
Locus tag: BBta_5925
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: BBta_5924
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: BBta_5923
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: BBta_5922
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: BBta_5921
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: BBta_5920
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: BBta_5919
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: BBta_5918
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: BBta_5917
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
nifH-nifD-nifK-nifE-nifN-nifX-PF03270-PF05082-fdxB -262 5.1 TGTCGGGTTTGCAACA BBta_5925
Mesorhizobium loti MAFF303099
Position: -459
Score: 4.21194
Sequence: TGTCCAATTCACGACA
Position: -217
Score: 4.203
Sequence: CGTCGCCAAATCGACA
Locus tag: msr5868
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: mlr5869
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: mlr5871
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
PF05082-fdxB-nifQ -459 4.2 TGTCCAATTCACGACA msr5868
-217 4.2 CGTCGCCAAATCGACA
Rhodopseudomonas palustris CGA009
Position: -252
Score: 4.42233
Sequence: TGTCGGATTCTAAACA
Locus tag: RPA4620
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: RPA4619
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: RPA4618
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: RPA4617
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: RPA4616
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: RPA4615
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: RPA4614
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: RPA4613
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: RPA4612
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: RPA4611
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
nifH-nifD-nifK-nifE-nifN-nifX-PF03270-PF05082-fdxB-nifQ -252 4.4 TGTCGGATTCTAAACA RPA4620
Xanthobacter autotrophicus Py2
Position: -358
Score: 4.5443
Sequence: CGTCGAACTTGCGACA
Position: -233
Score: 4.21163
Sequence: TGTCGGGTTCTGAACA
Locus tag: Xaut_0088
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Xaut_0089
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Xaut_0090
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: Xaut_0091
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: Xaut_0092
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: Xaut_0093
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: Xaut_0094
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: Xaut_0095
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: Xaut_0096
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: Xaut_0097
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
nifH-nifD-nifK-nifE-nifN-nifX-PF03270-PF05082-fdxB-nifQ -358 4.5 CGTCGAACTTGCGACA Xaut_0088
-233 4.2 TGTCGGGTTCTGAACA
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