Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Mesorhizobium loti MAFF303099

Properties
Regulator type: Transcription factor
TF locus tag: mll5857, mll5837
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhizobiales
Statistics of regulated genes:
- Genes 29
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 130 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -482
Score: 4.1
Sequence: GGTCCGACTTCCGACA
Position: -462
Score: 3.9
Sequence: TGTCCAGCTTCGGACA
Locus tag: mll5873
Name: ahpC1
Funciton: Alkyl hydroperoxide reductase protein (EC 1.6.4.-)
mll5873
ahpC1
Alkyl hydroperoxide reductase protein (EC 1.6.4.-)
Position: -331
Score: 3.6
Sequence: TGTCAAATCCGCATCA
Locus tag: mlr6364
Name: cpxP
Funciton: Cytochrome P450 protein CpxP
Locus tag: mlr6365
Name: cpxR
Funciton: Putative cytochrome P450 hydroxylase
mlr6364
cpxP
Cytochrome P450 protein CpxP
mlr6365
cpxR
Putative cytochrome P450 hydroxylase
Position: -154
Score: 4
Sequence: TGTCATGTCCGGGACA
Locus tag: mlr5875
Name: mlr5875
Funciton: Hypothetical protein
Locus tag: mlr5876
Name: cpxA
Funciton: Cytochrome P450 monooxygenase protein
mlr5875
mlr5875
Hypothetical protein
mlr5876
cpxA
Cytochrome P450 monooxygenase protein
Position: -459
Score: 4.2
Sequence: TGTCCAATTCACGACA
Position: -217
Score: 4.2
Sequence: CGTCGCCAAATCGACA
Locus tag: msr5868
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: mlr5869
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: mlr5871
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
msr5868
PF05082
Conserved hypothetical protein, probably related to nitrogen fixation protein
mlr5869
fdxB
Nitrogenase specific ferredoxin III protein FdxB
mlr5871
nifQ
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
Position: -194
Score: 4.6
Sequence: TGTCGGATCTTCGACG
Position: -177
Score: 4.3
Sequence: AGTCGGACATGAGACA
Locus tag: mll6127
Name: ompW
Funciton: Outer membrane protein W precursor
mll6127
ompW
Outer membrane protein W precursor
Position: -156
Score: 5.1
Sequence: TGTCGGCGACCTGACA
Locus tag: mll5855
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: msl8750
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: mll5854
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: msl5852
Name: nifT
Funciton: Nitrogen fixation protein NifT
mll5855
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
msl8750
fdxN
4Fe-4S ferredoxin, nitrogenase-associated
mll5854
nifZ
Nitrogen fixation protein NifZ
msl5852
nifT
Nitrogen fixation protein NifT
Position: -161
Score: 5.2
Sequence: TGTCGAAAAGCCGACA
Locus tag: mll5862
Name: fixB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: mll5861
Name: fixA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: mll5860
Name: fixC
Funciton: Electron-transferring-flavoprotein dehydrogenase
Locus tag: msl5859
Name: fixX
Funciton: Ferredoxin-like protein, FixX
Locus tag: mll5857
Name: nifA
Funciton: Nitrogen fixation transcriptional regulator NifA, Fis family
mll5862
fixB
Electron transfer flavoprotein, beta subunit
mll5861
fixA
Electron transfer flavoprotein, alpha subunit
mll5860
fixC
Electron-transferring-flavoprotein dehydrogenase
msl5859
fixX
Ferredoxin-like protein, FixX
mll5857
nifA
Nitrogen fixation transcriptional regulator NifA, Fis family
Position: -133
Score: 4.8
Sequence: TGTCCGACATCCGACA
Position: -115
Score: 4.6
Sequence: TGTTGGATGTGAGACA
Locus tag: mll5942
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: mll5941
Name: frxA
Funciton: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
mll5942
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
mll5941
frxA
2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
Position: -207
Score: 4.3
Sequence: TGTCAGGGCCGCTACA
Locus tag: mlr5905
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: mlr5906
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: mlr5907
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: mlr5908
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: mlr5909
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: mlr5911
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: mlr5912
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
mlr5905
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
mlr5906
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
mlr5907
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
mlr5908
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
mlr5909
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
mlr5911
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
mlr5912
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
Position: -77
Score: 3.6
Sequence: GGTCGGCGATGTGACT
Locus tag: msr5928
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: mlr5930
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
msr5928
PF05082
Conserved hypothetical protein, probably related to nitrogen fixation protein
mlr5930
fdxB
Nitrogenase specific ferredoxin III protein FdxB
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