Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Azorhizobium caulinodans ORS 571

Properties
Regulator type: Transcription factor
TF locus tag: AZC_1049
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhizobiales
Statistics of regulated genes:
- Genes 34
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 130 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -67
Score: 3.8
Sequence: TGTGGGGCCTCCGGCA
Locus tag: AZC_0303
Name: fer2
Funciton: Ferredoxin, 2Fe-2S (AaFd4)
AZC_0303
fer2
Ferredoxin, 2Fe-2S (AaFd4)
Position: -160
Score: 5.3
Sequence: TGTCGCAGTCGCGACA
Position: -142
Score: 5.2
Sequence: TGTCGGGGGCGCGACA
Locus tag: AZC_1043
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
AZC_1043
fdxN
4Fe-4S ferredoxin, nitrogenase-associated
Position: -138
Score: 5.1
Sequence: TGTTGGCAACGCGACA
Locus tag: AZC_3414
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: AZC_3415
Name: frxA
Funciton: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
Locus tag: AZC_3416
Name: hesB
Funciton: probable iron binding protein from the HesB_IscA_SufA family in Nif operon
Locus tag: AZC_3417
Name: RPA4627
Funciton: Conserved hypothetical protein, associated with nitrogen fixation genes
Locus tag: AZC_3418
Name: PF05484
Funciton: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
Locus tag: AZC_3419
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: AZC_3420
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
AZC_3414
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
AZC_3415
frxA
2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
AZC_3416
hesB
probable iron binding protein from the HesB_IscA_SufA family in Nif operon
AZC_3417
RPA4627
Conserved hypothetical protein, associated with nitrogen fixation genes
AZC_3418
PF05484
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
AZC_3419
nifZ
Nitrogen fixation protein NifZ
AZC_3420
nifZ
Nitrogen fixation protein NifZ
Position: -134
Score: 5.5
Sequence: TGTCGCAAAGGCGACA
Position: -116
Score: 4.3
Sequence: GGTCTGCTTCGCGACA
Locus tag: AZC_3409
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: AZC_3410
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: AZC_3411
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: AZC_3412
Name: nifT
Funciton: Nitrogen fixation protein NifT
AZC_3409
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
AZC_3410
nifU
Iron-sulfur cluster assembly scaffold protein NifU
AZC_3411
nifS
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
AZC_3412
nifT
Nitrogen fixation protein NifT
Position: -179
Score: 5
Sequence: TGTCGCATTCCCGACG
Position: -113
Score: 4.2
Sequence: TGTGGCATGCCAGACA
Locus tag: AZC_3447
Name: fixB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: AZC_3448
Name: fixA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: AZC_3449
Name: fixC
Funciton: Electron-transferring-flavoprotein dehydrogenase
Locus tag: AZC_3450
Name: fixX
Funciton: Ferredoxin-like protein, FixX
Locus tag: AZC_3451
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
AZC_3447
fixB
Electron transfer flavoprotein, beta subunit
AZC_3448
fixA
Electron transfer flavoprotein, alpha subunit
AZC_3449
fixC
Electron-transferring-flavoprotein dehydrogenase
AZC_3450
fixX
Ferredoxin-like protein, FixX
AZC_3451
PF05082
Conserved hypothetical protein, probably related to nitrogen fixation protein
Position: -192
Score: 4.1
Sequence: TGTCGCCTTCGGGGCA
Locus tag: AZC_3446
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
AZC_3446
nifW
Nitrogenase stabilizing/protective protein NifW
Position: -284
Score: 4.3
Sequence: TGTTTCCTTTCCAACA
Position: -255
Score: 4.8
Sequence: TGTCAGGTTCGAGACA
Locus tag: AZC_3443
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
AZC_3443
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Position: -235
Score: 5.6
Sequence: TGTCGGCTTTCCGACA
Position: -190
Score: 4.3
Sequence: TGTCGGGAACCCGCCG
Locus tag: AZC_1052
Name: xdhC
Funciton: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
AZC_1052
xdhC
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
Position: -206
Score: 4.3
Sequence: CGGCGGGTTCCCGACA
Position: -161
Score: 5.6
Sequence: TGTCGGAAAGCCGACA
Locus tag: AZC_1051
Name: ahpC
Funciton: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
Locus tag: AZC_1050
Name: ahpD
Funciton: Alkylhydroperoxidase protein D
AZC_1051
ahpC
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
AZC_1050
ahpD
Alkylhydroperoxidase protein D
Position: -281
Score: 4.7
Sequence: TGTCGCGTTTGAAACA
Locus tag: AZC_1041
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: AZC_1040
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: AZC_1039
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: AZC_1038
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: AZC_1037
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: AZC_1036
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: AZC_1035
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
AZC_1041
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
AZC_1040
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
AZC_1039
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
AZC_1038
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
AZC_1037
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
AZC_1036
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
AZC_1035
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
Position: -192
Score: 4.8
Sequence: TGTCTCGAACCTGACA
Position: -163
Score: 4.3
Sequence: TGTTGGAAAGGAAACA
Locus tag: AZC_3442
Name: cheY
Funciton: Predicted response regulator receiver protein
Locus tag: AZC_3441
Name: nifO
Funciton: Nitrogenase-associated protein NifO
AZC_3442
cheY
Predicted response regulator receiver protein
AZC_3441
nifO
Nitrogenase-associated protein NifO
Position: -128
Score: 5.4
Sequence: TGTCGCATGTGCGACA
Position: -121
Score: 4.1
Sequence: TGTGCGACATGCGACA
Locus tag: AZC_3437
Name: bolA
Funciton: BolA protein, predicted transcription regulator
Locus tag: AZC_3438
Name: grlA
Funciton: Glutaredoxin-related protein
AZC_3437
bolA
BolA protein, predicted transcription regulator
AZC_3438
grlA
Glutaredoxin-related protein
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