Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nifS gene

Properties
Regulog: NifA - Rhizobiales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Phylum: Proteobacteria/alpha
Built upon 130 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azorhizobium caulinodans ORS 571
Position: -134
Score: 5.48508
Sequence: TGTCGCAAAGGCGACA
Position: -116
Score: 4.33203
Sequence: GGTCTGCTTCGCGACA
Locus tag: AZC_3409
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: AZC_3410
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: AZC_3411
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: AZC_3412
Name: nifT
Funciton: Nitrogen fixation protein NifT
iscN-nifU-nifS-nifT -134 5.5 TGTCGCAAAGGCGACA AZC_3409
-116 4.3 GGTCTGCTTCGCGACA
Bradyrhizobium sp. BTAi1
Position: -190
Score: 4.84525
Sequence: TGTCGGATTTGCGCCA
Position: -130
Score: 5.24137
Sequence: TGTCGGAAAGTCGACA
Position: -112
Score: 4.3018
Sequence: CGTCGGAAACGCCACA
Locus tag: BBta_5909
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: BBta_5908
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: BBta_5907
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: BBta_5906
Name: nifT
Funciton: Nitrogen fixation protein NifT
iscN-nifU-nifS-nifT -190 4.8 TGTCGGATTTGCGCCA BBta_5909
-130 5.2 TGTCGGAAAGTCGACA
-112 4.3 CGTCGGAAACGCCACA
Rhizobium sp. NGR234
Position: -282
Score: 3.77786
Sequence: TCGCGCGAGGGCGACA
Locus tag: NGR_a00930
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: NGR_a00940
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
nifS-nifW -282 3.8 TCGCGCGAGGGCGACA NGR_a00930
Rhodopseudomonas palustris CGA009
Position: -140
Score: 4.01849
Sequence: CGTCGGCTTCACGACG
Position: -123
Score: 5.27521
Sequence: TGTCGGACCTCCGACA
Locus tag: RPA4610
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: RPA4609
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: RPA4608
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: RPA4607
Name: nifV
Funciton: Homocitrate synthase (EC 2.3.3.14)
Locus tag: RPA4606
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
iscN-nifU-nifS-nifV-nifW -140 4 CGTCGGCTTCACGACG RPA4610
-123 5.3 TGTCGGACCTCCGACA
Xanthobacter autotrophicus Py2
Position: -133
Score: 4.3844
Sequence: TGTCCGGAATCGGACA
Position: -115
Score: 4.11853
Sequence: CGTCGCAAAGACAACA
Locus tag: Xaut_0106
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: Xaut_0107
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: Xaut_0108
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: Xaut_0109
Name: nifT
Funciton: Nitrogen fixation protein NifT
iscN-nifU-nifS-nifT -133 4.4 TGTCCGGAATCGGACA Xaut_0106
-115 4.1 CGTCGCAAAGACAACA
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