Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_b00800, NGR_c18100
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 29
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -38
Score: 5.5
Sequence: GGTTTGATCCTGATCAAGCG
Locus tag: NGR_c05230
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: NGR_c05240
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: NGR_c05250
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: NGR_c05260
Name: ctaX
Funciton: Hypothetical protein in cta gene cluster
Locus tag: NGR_c05270
Name: ctaG
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: NGR_c05280
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
NGR_c05230
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
NGR_c05240
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
NGR_c05250
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
NGR_c05260
ctaX
Hypothetical protein in cta gene cluster
NGR_c05270
ctaG
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
NGR_c05280
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -115
Score: 5.5
Sequence: ACCTTGATCTGAATCAAGGC
Locus tag: NGR_c17990
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: NGR_c17980
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: NGR_c17970
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
NGR_c17990
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
NGR_c17980
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
NGR_c17970
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -79
Score: 5.3
Sequence: GACTTGACGCAGATCAAGGT
Locus tag: NGR_c17930
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: NGR_c17920
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: NGR_c17910
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: NGR_c17900
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
NGR_c17930
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
NGR_c17920
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
NGR_c17910
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
NGR_c17900
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -100
Score: 5.1
Sequence: CGGTTGATCTCGATCAATAT
Locus tag: NGR_a02570
Name: ompW
Funciton: Outer membrane protein W precursor
NGR_a02570
ompW
Outer membrane protein W precursor
Position: -21
Score: 5
Sequence: ATCTTGATGGAGGTCAAGGG
Locus tag: NGR_c03790
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
NGR_c03790
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -130
Score: 4.7
Sequence: TAATTGACGAAAATCAATTT
Locus tag: NGR_c09990
Name: napE
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: NGR_c10000
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: NGR_c10010
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: NGR_c10020
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: NGR_c10030
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: NGR_c10040
Name: napC
Funciton: Cytochrome c-type protein NapC
NGR_c09990
napE
Periplasmic nitrate reductase component NapE
NGR_c10000
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
NGR_c10010
napD
Periplasmic nitrate reductase component NapD
NGR_c10020
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NGR_c10030
napB
Nitrate reductase cytochrome c550-type subunit
NGR_c10040
napC
Cytochrome c-type protein NapC
Position: -156
Score: 5.2
Sequence: TGCTTGACTTCGATCAAAGT
Locus tag: NGR_c30700
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
NGR_c30700
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -196
Score: 3.6
Sequence: TCTTTGACAATTGGCAAAGA
Position: -92
Score: 4.5
Sequence: TATTTGTTCCACCTCAAAGA
Locus tag: NGR_c09950
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: NGR_c09960
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: NGR_c09970
Name: nnrR
Funciton: Nitric oxide stress response transcriptional regulator NnrR, Crp family
NGR_c09950
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
NGR_c09960
nirV
Nitrite reductase accessory protein NirV
NGR_c09970
nnrR
Nitric oxide stress response transcriptional regulator NnrR, Crp family
Position: -64
Score: 4.7
Sequence: TCTTTGCGCTTGATCAAAGA
Locus tag: NGR_c09830
Name: Atu8040
Funciton: Conserved hypothetical protein
Locus tag: NGR_c09820
Name: nnrU
Funciton: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
NGR_c09830
Atu8040
Conserved hypothetical protein
NGR_c09820
nnrU
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
Position: -92
Score: 4.7
Sequence: TGTTTGACAGACATCAAAGA
Locus tag: NGR_c09980
Name: paz
Funciton: pseudoazurin
NGR_c09980
paz
pseudoazurin
Position: -162
Score: 5.5
Sequence: TTTTTGATCTGGATCAAGTG
Position: -123
Score: 3.7
Sequence: AAATTGACATTCGTCAGTTC
Locus tag: NGR_c18100
Name: fnrN
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
NGR_c18100
fnrN
Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
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