Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Salmonella typhimurium LT2

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AllR Allantoin Allantoin utilization 3 3
TF AraC Arabinose Arabinose utilization 4 6
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 13 23
TF BirA Biotin Biotin biosynthesis 3 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 262 283
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 6 3
TF DgoR Galactonate Galactonate utilization 1 3
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 12 13
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 84 74
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 31 24
TF FucR L-fuculose-1-phosphate Fucose utilization 2 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 34 52
TF GalR/GalS Galactose Galactose utilization 4 5
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 6 7
TF GntR Gluconate Gluconate utilization 5 7
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 6 4
TF HutC cis-Urocanic acid Histidine utilization 2 1
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IdnR L-idonate; 5-dehydro-D-gluconate Idonate utilization 2 2
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 14 13
TF LeuO Guanosine 3',5'-bis(diphosphate) 2 4
TF LexA DNA damage SOS response 29 31
TF LldR L-lactate Lactate utilization 1 2
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 2 4
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 14 12
TF MetR Homocysteine Methionine biosynthesis 8 10
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 5 5
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 6 7
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 4 3
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 8
TF NanR N-acetylneuraminic acid Sialic acid utilization 2 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 28 25
TF NhaR Potassium ion Osmotic stress response 1 1
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 3 2
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 6
TF NsrR Nitric oxide Nitrosative stress response 11 13
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 9 12
TF PdhR Pyruvate Pyruvate metabolism 5 5
TF PdxR2 Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 2 4
TF PhnR 2-aminoethylphosphonate Phosphonate utilization; 2-aminoethylphosphonate utilization 3 3
TF PurR Hypoxanthine; Guanine Purine metabolism 31 30
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 2
TF RcnR Nickel ion, (Ni2+); Cobalt ion, (Co2+) Cobalt resistance; Nickel resistance 2 4
TF RhaR Rhamnose Rhamnose utilization 1 1
TF RhaS Rhamnose Rhamnose utilization 5 6
TF RspR L-gulonate; D-mannonate L-gulonate utilization 3 1
TF RutR Uracil Pyrimidine utilization 2 1
TF STM1555 Sugar utilization 1 1
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 4 6
TF SgaR Ascorbate-6-phosphate Ascorbate utilization 2 4
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 2 2
TF SoxR Paraquat Superoxide stress response 2 2
TF Spro_3719 1 1
TF SrlR Sorbitol-6-phosphate Sorbitol utilization 1 1
TF TalR L-talarate L-talarate utilization 2 4
TF TrpR Tryptophan Tryptophan biosynthesis 5 5
TF TtrR Tetrathionate Tetrathionate reduction 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 11
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 2 2
TF UxuR Glucuronate Glucuronate utilization 4 7
TF YdcR 1 1
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 2 2
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 5
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA Mg_sensor Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA yybP-ykoY 2 2
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