Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Salmonella typhimurium LT2

Properties
Regulator type: Transcription factor
TF locus tag: STM2246
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 87
- Operons 23
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -365
Score: 4
Sequence: TAACTCATGATGGGTA
Locus tag: STM0075
Name: fixA
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: STM0076
Name: fixB
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: STM0077
Name: fixC
Funciton: Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
Locus tag: STM0078
Name: fixX
Funciton: Predicted ferredoxin involved in anaerobic carnitine metabolism
STM0075
fixA
Flavoprotein involved in anaerobic carnitine metabolism
STM0076
fixB
Flavoprotein involved in anaerobic carnitine metabolism
STM0077
fixC
Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
STM0078
fixX
Predicted ferredoxin involved in anaerobic carnitine metabolism
Position: -159
Score: 4.3
Sequence: TCCTCCCAAAGGAGTA
Locus tag: STM1764
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: STM1763
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: STM1762
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: STM1761
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
STM1764
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
STM1763
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
STM1762
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
STM1761
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -78
Score: 3.9
Sequence: CACCCCGAAAGAGTTA
Locus tag: STM4399
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
STM4399
dnrN
Nitric oxide-dependent regulator DnrN
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: STM2473
Name: talA
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: STM2474
Name: tktB
Funciton: Transketolase (EC 2.2.1.1)
STM2473
talA
Transaldolase (EC 2.2.1.2)
STM2474
tktB
Transketolase (EC 2.2.1.1)
Position: -188
Score: 4.1
Sequence: TACCTCCCTGGAGTTA
Locus tag: STM1570
Name: fdnG
Funciton: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Locus tag: STM1569
Name: fdnH
Funciton: Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
Locus tag: STM1568
Name: fdnI
Funciton: Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
STM1570
fdnG
Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
STM1569
fdnH
Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
STM1568
fdnI
Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
Position: -55
Score: 4.7
Sequence: TACTTCATTGTGGGTA
Locus tag: STM1732
Name: ompW
Funciton: Outer membrane protein W precursor
STM1732
ompW
Outer membrane protein W precursor
Position: -216
Score: 4.6
Sequence: TACTCAGAAGTGAGTA
Locus tag: STM1749
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
STM1749
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -91
Score: 4.2
Sequence: TAATCGTTAATGGGTA
Locus tag: STM0781
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: STM0782
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: STM0783
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
STM0781
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
STM0782
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
STM0783
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -230
Score: 4.3
Sequence: TTACCCTTAATGAGTA
Position: -120
Score: 4.5
Sequence: TAACTCGTTATAGGTA
Locus tag: STM1766
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: STM1767
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
STM1766
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
STM1767
narL
Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -236
Score: 4.2
Sequence: TACCTATAACGAGTTA
Position: -126
Score: 4
Sequence: TACTCATTAAGGGTAA
Locus tag: STM1765
Name: narK
Funciton: Nitrate/nitrite antiporter
STM1765
narK
Nitrate/nitrite antiporter
Position: -30
Score: 4.5
Sequence: TACCTCGAAGTGAGCA
Locus tag: STM3872
Name: atpI
Funciton: ATP synthase maturation
Locus tag: STM3871
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: STM3870
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: STM3869
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: STM3868
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: STM3867
Name: atpA
Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: STM3866
Name: atpG
Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: STM3865
Name: atpD
Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: STM3864
Name: atpC
Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
STM3872
atpI
ATP synthase maturation
STM3871
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
STM3870
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
STM3869
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
STM3868
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
STM3867
atpA
ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
STM3866
atpG
ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
STM3865
atpD
ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
STM3864
atpC
ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
Position: -143
Score: 4.8
Sequence: TACCTCTTTGGCGGTA
Locus tag: STM0937
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: STM0936
Name: hcr
Funciton: NADH oxidoreductase hcr (EC 1.-.-.-)
STM0937
hcp
Hydroxylamine reductase (EC 1.7.-.-)
STM0936
hcr
NADH oxidoreductase hcr (EC 1.-.-.-)
Position: -104
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: STM2336
Name: yfbV
Funciton: Predicted membrane protein
Locus tag: STM2335
Name: yfbU
Funciton: Conserved hypothetical protein
Locus tag: STM2334
Name: yfbT
Funciton: Predicted phosphatase
Locus tag: STM2333
Name: yfbS
Funciton: Predicted transport protein
STM2336
yfbV
Predicted membrane protein
STM2335
yfbU
Conserved hypothetical protein
STM2334
yfbT
Predicted phosphatase
STM2333
yfbS
Predicted transport protein
Position: -131
Score: 4.1
Sequence: TACCCATCATGAGTTA
Locus tag: STM0074
Name: caiT
Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: STM0073
Name: caiA
Funciton: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: STM0072
Name: caiB
Funciton: Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
Locus tag: STM0071
Name: caiC
Funciton: Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
Locus tag: STM0070
Name: caiD
Funciton: Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
Locus tag: STM0069
Name: caiE
Funciton: Carnitine operon protein CaiE
STM0074
caiT
L-carnitine/gamma-butyrobetaine antiporter
STM0073
caiA
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
STM0072
caiB
Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
STM0071
caiC
Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
STM0070
caiD
Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
STM0069
caiE
Carnitine operon protein CaiE
Position: -48
Score: 4.3
Sequence: TTCCCATAATTGGGTA
Locus tag: STM3328
Name: arcB
Funciton: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
STM3328
arcB
Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
Position: -177
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: STM4277
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: STM4278.S
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: STM4279
Name: nrfC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: STM4280
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: STM4281
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: STM4282
Name: nrfG
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
STM4277
nrfA
Nitrite reductase, cytochrome c(552)
STM4278.S
nrfB
Cytochrome c-type protein NrfB precursor
STM4279
nrfC
Nitrite reductase, Fe-S center subunit
STM4280
nrfD
Nitrite reductase, NrfD component
STM4281
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
STM4282
nrfG
Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
Position: -204
Score: 4.3
Sequence: TACCTCCTGGTGGGTA
Locus tag: STM0151
Name: pdhR
Funciton: Pyruvate utilization transcriptional regulator PdhR, GntR family
Locus tag: STM0152
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: STM0153
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: STM0154
Name: lpd
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
STM0151
pdhR
Pyruvate utilization transcriptional regulator PdhR, GntR family
STM0152
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
STM0153
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
STM0154
lpd
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
Position: -161
Score: 4.6
Sequence: TACCCTATTAGGGGTA
Locus tag: STM0964
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: STM0965
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: STM0966
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
STM0964
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
STM0965
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
STM0966
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Position: -95
Score: 5
Sequence: TACTCCCAAAGGGGTA
Locus tag: STM1499
Name: ynfE
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: STM1498
Name: ynfF
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: STM1497
Name: ynfG
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: STM1496
Name: ynfH
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: STM1495
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
STM1499
ynfE
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
STM1498
ynfF
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
STM1497
ynfG
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
STM1496
ynfH
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
STM1495
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
Position: -101
Score: 5
Sequence: TACCCATTAAGAGGTA
Locus tag: STM3474
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: STM3475
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: STM3476
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: STM3477
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
STM3474
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
STM3475
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
STM3476
nirC
Nitrite transporter, FNT family
STM3477
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -99
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: STM1271
Name: yeaR
Funciton: Conserved hypothetical protein
Locus tag: STM1272
Name: yoaG
Funciton: Conserved hypothetical protein
STM1271
yeaR
Conserved hypothetical protein
STM1272
yoaG
Conserved hypothetical protein
Position: -132
Score: 4.8
Sequence: TACCTCTATCGGGGTA
Locus tag: STM2261
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: STM2260
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: STM2259
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: STM2258
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: STM2257
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: STM2256
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: STM2255
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: STM2254
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM2253
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM2252
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM2251
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM2250
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM2249
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: STM2248
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM2247
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
STM2261
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
STM2260
napD
Periplasmic nitrate reductase component NapD
STM2259
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
STM2258
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
STM2257
napH
Periplasmic nitrate reductase, polyferredoxin NapH
STM2256
napB
Nitrate reductase cytochrome c550-type subunit
STM2255
napC
Cytochrome c-type protein NapC
STM2254
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
STM2253
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
STM2252
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
STM2251
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
STM2250
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
STM2249
ccmF
Cytochrome c heme lyase, subunit CcmF
STM2248
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
STM2247
ccmH
Cytochrome c heme lyase, subunit CcmH
Position: -100
Score: 4.7
Sequence: TACCCATAAAGGAGCA
Locus tag: STM4343
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: STM4342
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Locus tag: STM4341
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: STM4340
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
STM4343
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
STM4342
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
STM4341
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
STM4340
frdD
Fumarate reductase subunit D (EC 1.3.5.4)
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