Regulon of NagC in Salmonella typhimurium LT2
| Regulator type: | Transcription factor |
| TF locus tag: | STM0682 |
| Regulator family: | ROK |
| Regulation mode: | repressor (activator) |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Regulog: | NagC - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - NagC
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
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Position: -241
Score: 4.8 Sequence: GATTTTTTGAATCATAAAATAAG
Position: -147
Score: 5.8 Sequence: TTTAATTTGCGAGGCGAATTAAT
Locus tag: STM0685
Name: nagE Funciton: PTS system, N-acetylglucosamine-specific IIABC component |
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nagE
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PTS system, N-acetylglucosamine-specific IIABC component
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Position: -202
Score: 5.8 Sequence: ATTAATTCGCCTCGCAAATTAAA
Position: -108
Score: 4.8 Sequence: CTTATTTTATGATTCAAAAAATC
Locus tag: STM0684
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: STM0683
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: STM0682
Name: nagC Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Locus tag: STM0681
Name: nagD Funciton: Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagC
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N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
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nagD
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Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
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Position: -141
Score: 5.2 Sequence: TTTTTTTCGATATCTAAAATAAT
Locus tag: STM1830
Name: manX Funciton: PTS system, mannose-specific IIAB component
Locus tag: STM1831
Name: manY Funciton: PTS system, mannose-specific IIc component
Locus tag: STM1832
Name: manZ Funciton: PTS system, mannose-specific IID component |
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manX
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PTS system, mannose-specific IIAB component
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manY
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PTS system, mannose-specific IIc component
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manZ
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PTS system, mannose-specific IID component
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Position: -232
Score: 5.1 Sequence: CTTATTTATTATCGCGAATTATT
Locus tag: STM1312
Name: chbB Funciton: PTS system, chitobiose-specific IIB component (EC 2.7.1.69)
Locus tag: STM1313
Name: chbC Funciton: PTS system, chitobiose-specific IIC component (EC 2.7.1.69)
Locus tag: STM1314
Name: chbA Funciton: N,N'-diacetylchitobiose-specific PTS system, EIIA component
Locus tag: STM1315
Name: chbR Funciton: Chitobiose-specific regulator ChbR, AraC family
Locus tag: STM1316
Name: chbF Funciton: Chitobiose-specific 6-phospho-beta-glucosidase ChbF (EC 3.2.1.86)
Locus tag: STM1317
Name: chbG Funciton: Cellobiose phosphotransferase system YdjC-like protein |
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chbB
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PTS system, chitobiose-specific IIB component (EC 2.7.1.69)
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chbC
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PTS system, chitobiose-specific IIC component (EC 2.7.1.69)
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chbA
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N,N'-diacetylchitobiose-specific PTS system, EIIA component
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chbR
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Chitobiose-specific regulator ChbR, AraC family
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chbF
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Chitobiose-specific 6-phospho-beta-glucosidase ChbF (EC 3.2.1.86)
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chbG
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Cellobiose phosphotransferase system YdjC-like protein
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Position: -139
Score: 4.7 Sequence: TATTTTTCAGATAATTAAATAAT
Locus tag: STM3091
Name: galP Funciton: D-galactose transporter |
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galP
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D-galactose transporter
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Position: -233
Score: 4.8 Sequence: CTTTATTTATGGAGTAAAAAAAC
Locus tag: STM3862
Name: glmU Funciton: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
Locus tag: STM3861
Name: glmS Funciton: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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glmU
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N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
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glmS
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Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |