Regulon of RhaS in Salmonella typhimurium LT2
| Regulator type: | Transcription factor |
| TF locus tag: | STM4048 |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaS - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - AraC
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -271
Score: 9.7 Sequence: TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT
Position: -127
Score: 7.8 Sequence: TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT
Locus tag: STM4050
Name: rhaT Funciton: L-rhamnose:proton symporter |
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rhaT
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L-rhamnose:proton symporter
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Position: -232
Score: 10.5 Sequence: ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Locus tag: STM4048
Name: rhaS Funciton: L-rhamnose operon transcriptional activator RhaS, AraC family
Locus tag: STM4049
Name: rhaR Funciton: L-rhamnose operon transcriptional activator RhaR, AraC family |
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rhaS
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L-rhamnose operon transcriptional activator RhaS, AraC family
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rhaR
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L-rhamnose operon transcriptional activator RhaR, AraC family
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Position: -146
Score: 11.1 Sequence: CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT
Locus tag: STM1911
Name: rhiN2 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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rhiN2
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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Position: -106
Score: 10.7 Sequence: ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT
Locus tag: STM4054
Name: rhiA Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Locus tag: STM4053
Name: rhiB Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
Locus tag: STM4052
Name: rhiC Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
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rhiA
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predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
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rhiB
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predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
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rhiC
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predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
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Position: -105
Score: 11.3 Sequence: ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Locus tag: STM4047
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5)
Locus tag: STM4046
Name: rhaA Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: STM4045
Name: rhaD Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
Locus tag: STM4044
Name: rhaZ Funciton: L-lactaldehyde reductase
Locus tag: STM4043
Name: rhaM Funciton: L-rhamnose mutarotase |
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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rhaA
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L-rhamnose isomerase (EC 5.3.1.14)
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rhaD
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
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rhaZ
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L-lactaldehyde reductase
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rhaM
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L-rhamnose mutarotase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |