Regulon of RhaS in Salmonella typhimurium LT2

Properties
Regulator type:	Transcription factor
TF locus tag:	STM4048
Regulator family:	AraC
Regulation mode:	activator
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Regulog:	RhaS - Enterobacteriales
Statistics of regulated genes:
- Genes	12
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 31 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - AraC
By effector - Rhamnose
By pathway - Rhamnose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -271 Score: 9.7 Sequence: TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT Position: -127 Score: 7.8 Sequence: TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT Locus tag: STM4050 Name: rhaT Funciton: L-rhamnose:proton symporter
	STM4050	rhaT	L-rhamnose:proton symporter
Position: -232 Score: 10.5 Sequence: ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT Locus tag: STM4048 Name: rhaS Funciton: L-rhamnose operon transcriptional activator RhaS, AraC family Locus tag: STM4049 Name: rhaR Funciton: L-rhamnose operon transcriptional activator RhaR, AraC family
	STM4048	rhaS	L-rhamnose operon transcriptional activator RhaS, AraC family
	STM4049	rhaR	L-rhamnose operon transcriptional activator RhaR, AraC family
Position: -146 Score: 11.1 Sequence: CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT Locus tag: STM1911 Name: rhiN2 Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
	STM1911	rhiN2	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Position: -106 Score: 10.7 Sequence: ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT Locus tag: STM4054 Name: rhiA Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit Locus tag: STM4053 Name: rhiB Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit Locus tag: STM4052 Name: rhiC Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
	STM4054	rhiA	predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
	STM4053	rhiB	predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
	STM4052	rhiC	predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
Position: -105 Score: 11.3 Sequence: ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT Locus tag: STM4047 Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5) Locus tag: STM4046 Name: rhaA Funciton: L-rhamnose isomerase (EC 5.3.1.14) Locus tag: STM4045 Name: rhaD Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) Locus tag: STM4044 Name: rhaZ Funciton: L-lactaldehyde reductase Locus tag: STM4043 Name: rhaM Funciton: L-rhamnose mutarotase
	STM4047	rhaB	Rhamnulokinase (EC 2.7.1.5)
	STM4046	rhaA	L-rhamnose isomerase (EC 5.3.1.14)
	STM4045	rhaD	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
	STM4044	rhaZ	L-lactaldehyde reductase
	STM4043	rhaM	L-rhamnose mutarotase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD