Regulog RhaS - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - AraC
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | 5 | 4 |
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | 14 | 4 |
| Erwinia amylovora ATCC 49946 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | 13 | 7 |
| Escherichia coli str. K-12 substr. MG1655 | 7 | 3 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 14 | 4 |
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | 12 | 5 |
| Serratia proteamaculans 568 | ||
| Yersinia pestis KIM | 3 | 3 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| rhaB |
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Citrobacter koseri ATCC BAA-895 Site: position = -160 score = 10.6665 sequence = ACCTTTGCCTCCTTGCCA-(15)-TGTCAGTAACAGGAAGGT Gene: CKO_03100: Rhamnulokinase (EC 2.7.1.5) |
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Enterobacter sp. 638 Site: position = -107 score = 10.1038 sequence = ATCTTTGATTCCTTGCCA-(15)-TGTCAGTGGCGAGAAGGT Gene: Ent638_4067: Rhamnulokinase (EC 2.7.1.5) |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -105 score = 9.69397 sequence = AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT Gene: ECA0440: Rhamnulokinase (EC 2.7.1.5) |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -105 score = 11.0876 sequence = ATCTTTCCCTGGTTGCCA-(14)-TGTCAGTAACGAGAAGGT Gene: b3904: Rhamnulokinase (EC 2.7.1.5) |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -106 score = 10.516 sequence = ACCTTTGCTTTCTTGCCA-(15)-TGTCCGTAACGAGAAGGT Gene: KPN_04213: Rhamnulokinase (EC 2.7.1.5) |
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Salmonella typhimurium LT2 Site: position = -105 score = 11.341 sequence = ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT Gene: STM4047: Rhamnulokinase (EC 2.7.1.5) |
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Yersinia pestis KIM Site: position = -212 score = 10.1077 sequence = ACTTTCGTCATTCTGCCA-(15)-TGGCAGTGATGAGAAGGT Gene: y0587: Rhamnulokinase (EC 2.7.1.5) |
Rhamnulokinase (EC 2.7.1.5) |
| rhaA |
Gene: CKO_03102: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: Ent638_4068: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: ECA0439: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: b3903: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: KPN_04212: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: STM4046: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: y0586: L-rhamnose isomerase (EC 5.3.1.14) |
L-rhamnose isomerase (EC 5.3.1.14) |
| rhaD |
Gene: CKO_03103: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
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Gene: Ent638_4069: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
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Gene: ECA0438: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: b3902: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Gene: KPN_04211: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
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Gene: STM4045: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
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Gene: y0585: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
| rhaF |
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Gene: Ent638_4070: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
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Gene: KPN_04210: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
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L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
| rhaG |
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Gene: Ent638_4071: L-rhamnose ABC transporter, duplicated ATP-binding component |
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Gene: KPN_04209: L-rhamnose ABC transporter, duplicated ATP-binding component |
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L-rhamnose ABC transporter, duplicated ATP-binding component |
| rhaH |
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Gene: Ent638_4072: L-rhamnose ABC transporter, permease component 1 |
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Gene: KPN_04208: L-rhamnose ABC transporter, permease component 1 |
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L-rhamnose ABC transporter, permease component 1 |
| rhaJ |
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Gene: Ent638_4073: L-rhamnose ABC transporter, permease component 2 |
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Gene: KPN_04207: L-rhamnose ABC transporter, permease component 2 |
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L-rhamnose ABC transporter, permease component 2 |
| rhaZ |
Gene: CKO_03104: L-lactaldehyde reductase |
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Gene: Ent638_4074: L-lactaldehyde reductase |
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Gene: KPN_04206: L-lactaldehyde reductase |
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Gene: STM4044: L-lactaldehyde reductase |
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Gene: y0584: L-lactaldehyde reductase |
L-lactaldehyde reductase |
| rhaM |
Gene: CKO_03106: L-rhamnose mutarotase |
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Gene: Ent638_4075: L-rhamnose mutarotase |
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Gene: ECA0437: L-rhamnose mutarotase |
Gene: b3901: L-rhamnose mutarotase |
Gene: KPN_04205: L-rhamnose mutarotase |
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Gene: STM4043: L-rhamnose mutarotase |
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Gene: y0583: L-rhamnose mutarotase |
L-rhamnose mutarotase |
| CRON 2. | |||||||||||||
| rhiE |
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*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -294 score = 9.89087 sequence = TTCTTCCCGCTAGTGCCA-(15)-TGGCAGTAGCGGGAAGGA Gene: ECA0804: Rhamnogalacturonate lyase precursor (EC 4.2.2.-) |
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Rhamnogalacturonate lyase precursor (EC 4.2.2.-) |
| CRON 3. | |||||||||||||
| rhaS |
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Citrobacter koseri ATCC BAA-895 Site: position = -245 score = 10.4971 sequence = ACCTTCCTGTTACTGACA-(15)-TGGCAAGGAGGCAAAGGT Gene: CKO_03099: L-rhamnose operon transcriptional activator RhaS, AraC family |
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Enterobacter sp. 638 Site: position = -245 score = 9.141 sequence = ACCTTCTCGCCACTGACA-(15)-TGGCAAGGAATCAAAGAT Gene: Ent638_4066: L-rhamnose operon transcriptional activator RhaS, AraC family |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -262 score = 9.77112 sequence = ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT Gene: ECA0441: L-rhamnose operon transcriptional activator RhaS, AraC family |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -232 score = 10.2662 sequence = ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT Gene: b3905: L-rhamnose operon transcriptional activator RhaS, AraC family |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -255 score = 10.0585 sequence = ACCTTCTCGTTACGGACA-(15)-TGGCAAGAAAGCAAAGGT Gene: KPN_04214: L-rhamnose operon transcriptional activator RhaS, AraC family |
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Salmonella typhimurium LT2 Site: position = -232 score = 10.5344 sequence = ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT Gene: STM4048: L-rhamnose operon transcriptional activator RhaS, AraC family |
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Yersinia pestis KIM Site: position = -265 score = 10.1587 sequence = ACCTTCTCATCACTGCCA-(15)-TGGCAGAATGACGAAAGT Gene: y0590: L-rhamnose operon transcriptional activator RhaS, AraC family |
L-rhamnose operon transcriptional activator RhaS, AraC family |
| rhaR |
Gene: CKO_03095: L-rhamnose operon transcriptional activator RhaR, AraC family |
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Gene: Ent638_4065: L-rhamnose operon transcriptional activator RhaR, AraC family |
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Gene: ECA0442: L-rhamnose operon transcriptional activator RhaR, AraC family |
Gene: b3906: L-rhamnose operon transcriptional activator RhaR, AraC family |
Gene: KPN_04215: L-rhamnose operon transcriptional activator RhaR, AraC family |
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Gene: STM4049: L-rhamnose operon transcriptional activator RhaR, AraC family |
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Gene: y0591: L-rhamnose operon transcriptional activator RhaR, AraC family |
L-rhamnose operon transcriptional activator RhaR, AraC family |
| CRON 4. | |||||||||||||
| aldA |
Gene: CKO_01448: Aldehyde dehydrogenase A (EC 1.2.1.22) |
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Gene: Ent638_1953: Aldehyde dehydrogenase A (EC 1.2.1.22) |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -279 score = 10.1352 sequence = ATCATGACTTTTTTGCCA-(15)-TGGCAGCTATGAAAAGGT Gene: ECA0118: Aldehyde dehydrogenase A (EC 1.2.1.22) |
Gene: b1415: Aldehyde dehydrogenase A (EC 1.2.1.22) |
Gene: KPN_01501: Aldehyde dehydrogenase A (EC 1.2.1.22) |
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Aldehyde dehydrogenase A (EC 1.2.1.22) |
| CRON 5. | |||||||||||||
| rhiA |
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Salmonella typhimurium LT2 Site: position = -106 score = 10.6943 sequence = ATCTTTCTTTTGGTGCCA-(14)-TGGCAAAATCAAGAAGGT Gene: STM4054: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
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predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
| rhiB |
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Gene: STM4053: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
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predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
| rhiC |
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Gene: STM4052: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
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predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
| CRON 6. | |||||||||||||
| ECA2209 |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -238 score = 10.7309 sequence = ATCTTTATCCTACTGCCA-(15)-TGGCAATAATGTGAAGGT Gene: ECA2209: putative oxidoreductase |
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putative oxidoreductase |
| ECA2210 |
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Gene: ECA2210: periplasmic binding protein precursor |
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periplasmic binding protein precursor |
| CRON 7. | |||||||||||||
| rhiN2 |
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Salmonella typhimurium LT2 Site: position = -146 score = 11.0641 sequence = CTCTTTGCGTTTTTGCCA-(15)-TGGCAGAAACAAAAAGGT Gene: STM1911: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| CRON 8. | |||||||||||||
| rhiT |
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Citrobacter koseri ATCC BAA-895 Site: position = -147 score = 11.0032 sequence = CTCTTTGTATTTTTGCCA-(15)-TGGCAAAAATGAAAAGGT Gene: CKO_01081: Rhamnogalacturonide transporter |
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Enterobacter sp. 638 Site: position = -146 score = 11.0743 sequence = CTCTTTGCATTATTGCCA-(15)-TGGCAGAAACAGAAAGGT Gene: Ent638_2444: Rhamnogalacturonide transporter |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -123 score = 10.5761 sequence = ATCTTCCCTGTGCTGCCA-(15)-TGGCAAAAGCGCAAAGGT Gene: ECA3560: Rhamnogalacturonide transporter |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -157 score = 10.3497 sequence = CTCTTTGTCATTTTGCCA-(15)-TGGCAAAAGTACAAAGGT Gene: KPN_02390: Rhamnogalacturonide transporter |
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Rhamnogalacturonide transporter |
| rhiN |
Gene: CKO_01082: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: Ent638_2443: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: ECA3559: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: KPN_02389: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| CRON 9. | |||||||||||||
| rhaT |
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Citrobacter koseri ATCC BAA-895 Site: position = -126 score = 8.47014 sequence = ATAACGTGCTGGTTGCCA-(15)-CGGCAATCCTCAAAAGGT Gene: CKO_03094: L-rhamnose:proton symporter |
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Enterobacter sp. 638 Site: position = -127 score = 8.31058 sequence = TTAACGCGTTGATTGCCA-(15)-CGGCAACCTTCTGAAGGT Gene: Ent638_4064: L-rhamnose:proton symporter |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -171 score = 8.41524 sequence = ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT Gene: ECA0450: L-rhamnose:proton symporter |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -123 score = 9.28177 sequence = TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT Gene: b3907: L-rhamnose:proton symporter |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -127 score = 8.57021 sequence = TTAAGCCCATGGTTGCCA-(15)-TGGCAACGTCCTGAAGGC Gene: KPN_04216: L-rhamnose:proton symporter |
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Salmonella typhimurium LT2 Site: position = -271 score = 9.68126 sequence = TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT Site: position = -127 score = 7.77014 sequence = TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT Gene: STM4050: L-rhamnose:proton symporter |
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Yersinia pestis KIM Site: position = -149 score = 9.30914 sequence = ACCTACTGAATTTTGCCA-(15)-AGGCAGTCAGCCGAAGGT Gene: y0593: L-rhamnose:proton symporter |
L-rhamnose:proton symporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |