Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RhaS in Erwinia carotovora subsp. atroseptica SCRI1043

Properties
Regulator type: Transcription factor
TF locus tag: ECA0441
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnose utilization
Effector: Rhamnose
Regulog: RhaS - Enterobacteriales
Statistics of regulated genes:
- Genes 13
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -294
Score: 9.9
Sequence: TTCTTCCCGCTAGTGCCA-(15)-TGGCAGTAGCGGGAAGGA
Locus tag: ECA0804
Name: rhiE
Funciton: Rhamnogalacturonate lyase precursor (EC 4.2.2.-)
ECA0804
rhiE
Rhamnogalacturonate lyase precursor (EC 4.2.2.-)
Position: -279
Score: 10.1
Sequence: ATCATGACTTTTTTGCCA-(15)-TGGCAGCTATGAAAAGGT
Locus tag: ECA0118
Name: aldA
Funciton: Aldehyde dehydrogenase A (EC 1.2.1.22)
ECA0118
aldA
Aldehyde dehydrogenase A (EC 1.2.1.22)
Position: -123
Score: 10.6
Sequence: ATCTTCCCTGTGCTGCCA-(15)-TGGCAAAAGCGCAAAGGT
Locus tag: ECA3560
Name: rhiT
Funciton: Rhamnogalacturonide transporter
Locus tag: ECA3559
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
ECA3560
rhiT
Rhamnogalacturonide transporter
ECA3559
rhiN
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Position: -171
Score: 8.4
Sequence: ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT
Locus tag: ECA0450
Name: rhaT
Funciton: L-rhamnose:proton symporter
ECA0450
rhaT
L-rhamnose:proton symporter
Position: -262
Score: 9.8
Sequence: ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT
Locus tag: ECA0441
Name: rhaS
Funciton: L-rhamnose operon transcriptional activator RhaS, AraC family
Locus tag: ECA0442
Name: rhaR
Funciton: L-rhamnose operon transcriptional activator RhaR, AraC family
ECA0441
rhaS
L-rhamnose operon transcriptional activator RhaS, AraC family
ECA0442
rhaR
L-rhamnose operon transcriptional activator RhaR, AraC family
Position: -238
Score: 10.7
Sequence: ATCTTTATCCTACTGCCA-(15)-TGGCAATAATGTGAAGGT
Locus tag: ECA2209
Name: null
Funciton: putative oxidoreductase
Locus tag: ECA2210
Name: null
Funciton: periplasmic binding protein precursor
ECA2209
putative oxidoreductase
ECA2210
periplasmic binding protein precursor
Position: -105
Score: 9.7
Sequence: AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT
Locus tag: ECA0440
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
Locus tag: ECA0439
Name: rhaA
Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: ECA0438
Name: rhaD
Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
Locus tag: ECA0437
Name: rhaM
Funciton: L-rhamnose mutarotase
ECA0440
rhaB
Rhamnulokinase (EC 2.7.1.5)
ECA0439
rhaA
L-rhamnose isomerase (EC 5.3.1.14)
ECA0438
rhaD
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
ECA0437
rhaM
L-rhamnose mutarotase
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