Regulon of NtrC in Salmonella typhimurium LT2
| Regulator type: | Transcription factor |
| TF locus tag: | STM4005 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -39
Score: 6.1 Sequence: TGCACTAAAATGGTGCA
Locus tag: STM4006
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: STM4005
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -224
Score: 5.5 Sequence: TGCACCAATGTGGTGCT
Position: -192
Score: 5.2 Sequence: AGCACTATTTTGGTGCA
Locus tag: STM4007
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -334
Score: 3.2 Sequence: AGCGCGAAAATGGCACG
Position: -304
Score: 4.1 Sequence: TGCGCCAGAACGGGGCG
Locus tag: STM1303
Name: astC Funciton: Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: STM1304
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: STM1305
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: STM1306
Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
Locus tag: STM1307
Name: astE Funciton: Succinylglutamate desuccinylase (EC 3.5.1.96) |
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astC
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Succinylornithine transaminase (EC 2.6.1.81)
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astA
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Arginine N-succinyltransferase (EC 2.3.1.109)
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astD
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Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
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astB
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Succinylarginine dihydrolase (EC 3.5.3.23)
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astE
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Succinylglutamate desuccinylase (EC 3.5.1.96)
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Position: -177
Score: 5.2 Sequence: TGCACCGTCGTGGTGCG
Locus tag: STM0462
Name: glnK Funciton: nitrogen regulatory protein P-II
Locus tag: STM0463
Name: amtB Funciton: Ammonium transporter |
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glnK
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nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -211
Score: 4 Sequence: CGCACCAAAATCGATCA
Position: -189
Score: 4.6 Sequence: AGCACCTGAACGGTGCA
Locus tag: STM0665
Name: gltI Funciton: Glutamate-aspartate ABC transporter, substrate-binding component
Locus tag: STM0664
Name: gltJ Funciton: Glutamate-aspartate ABC transporter, transmembrane component 1
Locus tag: STM0663
Name: gltK Funciton: Glutamate-aspartate ABC transporter, transmembrane component 2
Locus tag: STM0662
Name: gltL Funciton: Glutamate-aspartate ABC transporter, ATP-binding component |
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gltI
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Glutamate-aspartate ABC transporter, substrate-binding component
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gltJ
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Glutamate-aspartate ABC transporter, transmembrane component 1
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gltK
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Glutamate-aspartate ABC transporter, transmembrane component 2
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gltL
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Glutamate-aspartate ABC transporter, ATP-binding component
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Position: -211
Score: 4.4 Sequence: GGAACTATCACGGTGCA
Position: -182
Score: 5.1 Sequence: TGCACCTTTTTGGTGCA
Locus tag: STM2354
Name: hisJ Funciton: Histidine ABC transporter, substrate-binding component
Locus tag: STM2353
Name: hisQ Funciton: Histidine ABC transporter, transmembrane component 1
Locus tag: STM2352
Name: hisM Funciton: Histidine ABC transporter, transmembrane component 2
Locus tag: STM2351
Name: hisP Funciton: Histidine ABC transporter, ATP-binding component |
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hisJ
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Histidine ABC transporter, substrate-binding component
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hisQ
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Histidine ABC transporter, transmembrane component 1
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hisM
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Histidine ABC transporter, transmembrane component 2
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hisP
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Histidine ABC transporter, ATP-binding component
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Position: -172
Score: 5.1 Sequence: TGCACTAAATCAGTGCC
Position: -159
Score: 5.5 Sequence: TGCCCCAAAACGGTGCG
Locus tag: STM0830
Name: glnH Funciton: Glutamine ABC transporter, substrate-binding component
Locus tag: STM0829
Name: glnP Funciton: Glutamine ABC transporter, transmembrane component
Locus tag: STM0828
Name: glnQ Funciton: Glutamine ABC transporter, ATP-binding component |
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glnH
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Glutamine ABC transporter, substrate-binding component
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glnP
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Glutamine ABC transporter, transmembrane component
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glnQ
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Glutamine ABC transporter, ATP-binding component
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |