Regulon of NtrC in Salmonella typhimurium LT2

Properties
Regulator type:	Transcription factor
TF locus tag:	STM4005
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Enterobacteriales
Statistics of regulated genes:
- Genes	21
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -39 Score: 6.1 Sequence: TGCACTAAAATGGTGCA Locus tag: STM4006 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: STM4005 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	STM4006	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	STM4005	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -224 Score: 5.5 Sequence: TGCACCAATGTGGTGCT Position: -192 Score: 5.2 Sequence: AGCACTATTTTGGTGCA Locus tag: STM4007 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	STM4007	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -334 Score: 3.2 Sequence: AGCGCGAAAATGGCACG Position: -304 Score: 4.1 Sequence: TGCGCCAGAACGGGGCG Locus tag: STM1303 Name: astC Funciton: Succinylornithine transaminase (EC 2.6.1.81) Locus tag: STM1304 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: STM1305 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: STM1306 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23) Locus tag: STM1307 Name: astE Funciton: Succinylglutamate desuccinylase (EC 3.5.1.96)
	STM1303	astC	Succinylornithine transaminase (EC 2.6.1.81)
	STM1304	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	STM1305	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	STM1306	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
	STM1307	astE	Succinylglutamate desuccinylase (EC 3.5.1.96)
Position: -177 Score: 5.2 Sequence: TGCACCGTCGTGGTGCG Locus tag: STM0462 Name: glnK Funciton: nitrogen regulatory protein P-II Locus tag: STM0463 Name: amtB Funciton: Ammonium transporter
	STM0462	glnK	nitrogen regulatory protein P-II
	STM0463	amtB	Ammonium transporter
Position: -211 Score: 4 Sequence: CGCACCAAAATCGATCA Position: -189 Score: 4.6 Sequence: AGCACCTGAACGGTGCA Locus tag: STM0665 Name: gltI Funciton: Glutamate-aspartate ABC transporter, substrate-binding component Locus tag: STM0664 Name: gltJ Funciton: Glutamate-aspartate ABC transporter, transmembrane component 1 Locus tag: STM0663 Name: gltK Funciton: Glutamate-aspartate ABC transporter, transmembrane component 2 Locus tag: STM0662 Name: gltL Funciton: Glutamate-aspartate ABC transporter, ATP-binding component
	STM0665	gltI	Glutamate-aspartate ABC transporter, substrate-binding component
	STM0664	gltJ	Glutamate-aspartate ABC transporter, transmembrane component 1
	STM0663	gltK	Glutamate-aspartate ABC transporter, transmembrane component 2
	STM0662	gltL	Glutamate-aspartate ABC transporter, ATP-binding component
Position: -211 Score: 4.4 Sequence: GGAACTATCACGGTGCA Position: -182 Score: 5.1 Sequence: TGCACCTTTTTGGTGCA Locus tag: STM2354 Name: hisJ Funciton: Histidine ABC transporter, substrate-binding component Locus tag: STM2353 Name: hisQ Funciton: Histidine ABC transporter, transmembrane component 1 Locus tag: STM2352 Name: hisM Funciton: Histidine ABC transporter, transmembrane component 2 Locus tag: STM2351 Name: hisP Funciton: Histidine ABC transporter, ATP-binding component
	STM2354	hisJ	Histidine ABC transporter, substrate-binding component
	STM2353	hisQ	Histidine ABC transporter, transmembrane component 1
	STM2352	hisM	Histidine ABC transporter, transmembrane component 2
	STM2351	hisP	Histidine ABC transporter, ATP-binding component
Position: -172 Score: 5.1 Sequence: TGCACTAAATCAGTGCC Position: -159 Score: 5.5 Sequence: TGCCCCAAAACGGTGCG Locus tag: STM0830 Name: glnH Funciton: Glutamine ABC transporter, substrate-binding component Locus tag: STM0829 Name: glnP Funciton: Glutamine ABC transporter, transmembrane component Locus tag: STM0828 Name: glnQ Funciton: Glutamine ABC transporter, ATP-binding component
	STM0830	glnH	Glutamine ABC transporter, substrate-binding component
	STM0829	glnP	Glutamine ABC transporter, transmembrane component
	STM0828	glnQ	Glutamine ABC transporter, ATP-binding component

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Salmonella typhimurium LT2

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --