Regulon of Fnr in Salmonella typhimurium LT2
| Regulator type: | Transcription factor |
| TF locus tag: | STM1660.S |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Regulog: | Fnr - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 191 |
| - Operons | 68 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - CRP
- By effector - Oxygen
- By pathway - Energy metabolism
- By pathway - Anaerobic metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -349
Score: 5.3 Sequence: TTGATTTTAATCAA
Position: -297
Score: 3.9 Sequence: TTGTCCGTGATCAA
Locus tag: STM0740
Name: cydA Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: STM0741
Name: cydB Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
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cydA
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Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
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cydB
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Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
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Position: -143
Score: 4.7 Sequence: TTGATTAAAGACAA
Locus tag: STM4277
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: STM4278.S
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: STM4279
Name: nrfC Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: STM4280
Name: nrfD Funciton: Nitrite reductase, NrfD component
Locus tag: STM4281
Name: nrfE Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: STM4282
Name: nrfG Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG |
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nrfA
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Nitrite reductase, cytochrome c(552)
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nrfB
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Cytochrome c-type protein NrfB precursor
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nrfC
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Nitrite reductase, Fe-S center subunit
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nrfD
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Nitrite reductase, NrfD component
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nrfE
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
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nrfG
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
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Position: -40
Score: 4.8 Sequence: TTGATATACATCAT
Locus tag: STM2556
Name: hmp Funciton: Nitric oxide dioxygenase (EC 1.14.12.17) |
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hmp
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Nitric oxide dioxygenase (EC 1.14.12.17)
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Position: -199
Score: 4 Sequence: TTCATTTTTATCAG
Locus tag: STM3538
Name: glgB Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Locus tag: STM3537
Name: glgX Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
Locus tag: STM3536
Name: glgC Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: STM3535
Name: glgA Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: STM3534
Name: glgP Funciton: Glycogen phosphorylase (EC 2.4.1.1) |
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glgB
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1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
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glgX
|
Glycogen debranching enzyme (EC 3.2.1.-)
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glgC
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgA
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Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
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glgP
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Glycogen phosphorylase (EC 2.4.1.1)
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Position: -199
Score: 4.6 Sequence: TTGATGTAAATTAA
Locus tag: STM2328
Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: STM2327
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: STM2326
Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
Locus tag: STM2325
Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: STM2324
Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: STM2323.S
Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: STM2322
Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: STM2321
Name: nuoI Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: STM2320
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: STM2319
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: STM2318
Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: STM2317
Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: STM2316.S
Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
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nuoA
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NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
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nuoB
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NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
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nuoD
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NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
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nuoE
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NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
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nuoF
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NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
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nuoG
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NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
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nuoH
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NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
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nuoI
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NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
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nuoJ
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
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nuoK
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NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
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nuoL
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NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
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nuoM
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NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
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nuoN
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NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
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Position: -122
Score: 4.2 Sequence: TTGTTTGAAATCAC
Locus tag: STM3872
Name: atpI Funciton: ATP synthase protein I
Locus tag: STM3871
Name: atpB Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: STM3870
Name: atpE Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: STM3869
Name: atpF Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: STM3868
Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: STM3867
Name: atpA Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: STM3866
Name: atpG Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: STM3865
Name: atpD Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: STM3864
Name: atpC Funciton: ATP synthase epsilon chain (EC 3.6.3.14) |
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atpI
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ATP synthase protein I
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atpB
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ATP synthase A chain (EC 3.6.3.14)
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atpE
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ATP synthase C chain (EC 3.6.3.14)
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atpF
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ATP synthase B chain (EC 3.6.3.14)
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atpH
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ATP synthase delta chain (EC 3.6.3.14)
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atpA
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ATP synthase alpha chain (EC 3.6.3.14)
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atpG
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ATP synthase gamma chain (EC 3.6.3.14)
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atpD
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ATP synthase beta chain (EC 3.6.3.14)
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atpC
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ATP synthase epsilon chain (EC 3.6.3.14)
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Position: 10
Score: 3.6 Sequence: ATGTGAAAAAACAA
Locus tag: STM0732
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: STM0733
Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: STM0734
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: STM0735
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
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sdhC
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Succinate dehydrogenase cytochrome b-556 subunit
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sdhD
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Succinate dehydrogenase hydrophobic membrane anchor protein
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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Position: -88
Score: 3.7 Sequence: TTGATGAAACTGAA
Locus tag: STM2855
Name: hypB Funciton: [NiFe] hydrogenase nickel incorporation-associated protein HypB
Locus tag: STM2856
Name: hypC Funciton: [NiFe] hydrogenase metallocenter assembly protein HypC
Locus tag: STM2857
Name: hypD Funciton: [NiFe] hydrogenase metallocenter assembly protein HypD
Locus tag: STM2858
Name: hypE Funciton: [NiFe] hydrogenase metallocenter assembly protein HypE |
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hypB
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[NiFe] hydrogenase nickel incorporation-associated protein HypB
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hypC
|
[NiFe] hydrogenase metallocenter assembly protein HypC
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hypD
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[NiFe] hydrogenase metallocenter assembly protein HypD
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hypE
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[NiFe] hydrogenase metallocenter assembly protein HypE
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Position: -73
Score: 5.5 Sequence: TTGATTTATATCAA
Locus tag: STM1765
Name: narK Funciton: Nitrate/nitrite antiporter |
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narK
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Nitrate/nitrite antiporter
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Position: -177
Score: 5.1 Sequence:
Position: -124
Score: 5.6 Sequence:
Locus tag: STM2646
Name: yfiD Funciton: Stress-induced alternate pyruvate formate-lyase subunit |
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yfiD
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Stress-induced alternate pyruvate formate-lyase subunit
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Position: -138
Score: 3.6 Sequence: TTCATCTTTAGCAA
Position: -101
Score: 4.1 Sequence: GTGATTTTAATCAG
Locus tag: STM0627
Name: dcuC Funciton: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) |
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dcuC
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C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
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Position: -92
Score: 4.1 Sequence: ATGATGTTAATCAT
Locus tag: STM2337
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: -375
Score: 4.1 Sequence: TTGTTAATGGTCAA
Locus tag: STM1227
Name: pepT Funciton: Tripeptide aminopeptidase (EC 3.4.11.4) |
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pepT
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Tripeptide aminopeptidase (EC 3.4.11.4)
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Position: -256
Score: 3.7 Sequence: TCGTTTTTTATCAT
Locus tag: STM2283
Name: glpT Funciton: Glycerol-3-phosphate transporter
Locus tag: STM2282
Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) |
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glpT
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Glycerol-3-phosphate transporter
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glpQ
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Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
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Position: -281
Score: 5.5 Sequence: TTGATATAAATCAA
Locus tag: STM1766
Name: narX Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: STM1767
Name: narL Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family |
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narX
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Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
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narL
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Nitrate/nitrite response regulator protein NarL, LuxR family
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Position: -72
Score: 5.4 Sequence: TTGATTTACATCAA
Locus tag: STM3474
Name: nirB Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: STM3475
Name: nirD Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: STM3476
Name: nirC Funciton: Nitrite transporter
Locus tag: STM3477
Name: cysG Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nirB
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nirD
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nirC
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Nitrite transporter
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cysG
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -103
Score: 4.6 Sequence: TTGATCCAGGTCAA
Locus tag: STM2498
Name: upp Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Locus tag: STM2497
Name: uraA2 Funciton: Uracil permease |
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upp
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Uracil phosphoribosyltransferase (EC 2.4.2.9)
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uraA2
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Uracil permease
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Position: -131
Score: 4.3 Sequence: TTGTCTTAAATCAT
Locus tag: STM1777
Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: STM1776
Name: prfA Funciton: Peptide chain release factor 1
Locus tag: STM1775
Name: prmC Funciton: Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 |
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hemA
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Glutamyl-tRNA reductase (EC 1.2.1.70)
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prfA
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Peptide chain release factor 1
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prmC
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Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
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Position: -143
Score: 5.1 Sequence: TTGACTTAAATCAA
Locus tag: STM2503
Name: yfgF Funciton: Predicted cytochrome C-type biogenesis protein |
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yfgF
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Predicted cytochrome C-type biogenesis protein
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Position: -227
Score: 4.2 Sequence: TTGATGGGTAACAA
Locus tag: STM0058
Name: citC Funciton: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Locus tag: STM0059
Name: citD Funciton: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Locus tag: STM0060
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: STM0061
Name: citF Funciton: Citrate lyase alpha chain (EC 4.1.3.6)
Locus tag: STM0062
Name: citX Funciton: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
Locus tag: STM0063
Name: citG Funciton: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25) |
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citC
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[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
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citD
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Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
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citE
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Citrate lyase beta chain (EC 4.1.3.6)
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citF
|
Citrate lyase alpha chain (EC 4.1.3.6)
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citX
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Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
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citG
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2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
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Position: -182
Score: 4.1 Sequence: GTGAAATAAATCAA
Locus tag: STM0624
Name: citC Funciton: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Locus tag: STM0623
Name: citD Funciton: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Locus tag: STM0622
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: STM0621
Name: citF Funciton: Citrate lyase alpha chain (EC 4.1.3.6)
Locus tag: STM0620
Name: citX Funciton: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
Locus tag: STM0619
Name: citG Funciton: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25) |
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citC
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[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
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citD
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Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
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citE
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Citrate lyase beta chain (EC 4.1.3.6)
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citF
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Citrate lyase alpha chain (EC 4.1.3.6)
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citX
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Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
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citG
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2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
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Position: -309
Score: 4.4 Sequence: TTGACCTGGATCAA
Locus tag: STM2499.S
Name: purM Funciton: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Locus tag: STM2500
Name: purN Funciton: Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) |
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purM
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Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
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purN
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Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
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Position: -150
Score: 4.8 Sequence: TTGATGCACATCAA
Locus tag: STM1211
Name: ndh Funciton: NADH dehydrogenase (EC 1.6.99.3) |
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ndh
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NADH dehydrogenase (EC 1.6.99.3)
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Position: -146
Score: 4.8 Sequence: TTGATATATATCAT
Locus tag: STM0801
Name: ybhK Funciton: Predicted transferase, NAD(P)-binding |
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ybhK
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Predicted transferase, NAD(P)-binding
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Position: -126
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: STM4062
Name: pfkA Funciton: 6-phosphofructokinase (EC 2.7.1.11) |
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pfkA
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6-phosphofructokinase (EC 2.7.1.11)
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Position: -191
Score: 4.4 Sequence: TTAATCAAAATCAA
Locus tag: STM4343
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: STM4342
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: STM4341
Name: frdC Funciton: Fumarate reductase subunit C
Locus tag: STM4340
Name: frdD Funciton: Fumarate reductase subunit D |
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frdA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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frdB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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frdC
|
Fumarate reductase subunit C
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frdD
|
Fumarate reductase subunit D
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Position: -105
Score: 4.7 Sequence: TTGATCGTTATCAA
Locus tag: STM1764
Name: narG Funciton: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Locus tag: STM1763
Name: narH Funciton: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
Locus tag: STM1762
Name: narJ Funciton: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
Locus tag: STM1761
Name: narI Funciton: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
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narG
|
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
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narH
|
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
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narJ
|
Respiratory nitrate reductase delta chain (EC 1.7.99.4)
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narI
|
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
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Position: -110
Score: 4.4 Sequence: TTGCGCTAAATCAA
Locus tag: STM0937
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: STM0936
Name: hcr Funciton: NADH oxidoreductase hcr (EC 1.-.-.-) |
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hcp
|
Hydroxylamine reductase (EC 1.7.-.-)
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hcr
|
NADH oxidoreductase hcr (EC 1.-.-.-)
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Position: -30
Score: 3.8 Sequence: ATGATAAAAAACGA
Locus tag: STM2284
Name: glpA Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Locus tag: STM2285
Name: glpB Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
Locus tag: STM2286
Name: glpC Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3) |
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glpA
|
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
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glpB
|
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
|
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glpC
|
Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)
|
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Position: -74
Score: 4.9 Sequence: ATGATCTATATCAA
Locus tag: STM0974
Name: focA Funciton: Formate efflux transporter (TC 2.A.44 family)
Locus tag: STM0973
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54) |
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focA
|
Formate efflux transporter (TC 2.A.44 family)
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pflB
|
Pyruvate formate-lyase (EC 2.3.1.54)
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Position: -216
Score: 4.1 Sequence: TTGATTTATTTCAC
Locus tag: STM0625
Name: citA Funciton: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
Locus tag: STM0626
Name: citB Funciton: Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family |
|||
|
citA
|
Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
|
||
|
citB
|
Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family
|
||
|
Position: -96
Score: 4.2 Sequence:
Locus tag: STM0964
Name: dmsA Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: STM0965
Name: dmsB Funciton: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Locus tag: STM0966
Name: dmsC Funciton: Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) |
|||
|
dmsA
|
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
|
||
|
dmsB
|
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
|
||
|
dmsC
|
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
|
||
|
Position: 16
Score: 3.7 Sequence: TCAATAAAGATCAA
Locus tag: STM3514
Name: malP Funciton: Maltodextrin phosphorylase (EC 2.4.1.1)
Locus tag: STM3513
Name: malQ Funciton: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
|||
|
malP
|
Maltodextrin phosphorylase (EC 2.4.1.1)
|
||
|
malQ
|
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
|
||
|
Position: -110
Score: 4.7 Sequence: TTGATACCAATCAA
Locus tag: STM3820
Name: yhjA Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5) |
|||
|
yhjA
|
Cytochrome c551 peroxidase (EC 1.11.1.5)
|
||
|
Position: -69
Score: 4.4 Sequence: TTGACGCACATCAA
Locus tag: STM0844
Name: ybiY Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: STM0843
Name: ybiW Funciton: Pyruvate formate-lyase (EC 2.3.1.54) |
|||
|
ybiY
|
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
|
||
|
ybiW
|
Pyruvate formate-lyase (EC 2.3.1.54)
|
||
|
Position: -75
Score: 4 Sequence: TTGATCCAGGTCAT
Locus tag: STM3329
Name: yhcC Funciton: COG1242: Predicted Fe-S oxidoreductase |
|||
|
yhcC
|
COG1242: Predicted Fe-S oxidoreductase
|
||
|
Position: -347
Score: 3.3 Sequence: TTGACCGCCGTCAT
Locus tag: STM2830
Name: ydeJ Funciton: Competence/damage-inducible protein CinA |
|||
|
ydeJ
|
Competence/damage-inducible protein CinA
|
||
|
Position: -238
Score: 3.6 Sequence: GTCATATGCATCAA
Locus tag: STM1514
Name: ydeJ Funciton: Competence/damage-inducible protein CinA |
|||
|
ydeJ
|
Competence/damage-inducible protein CinA
|
||
|
Position: -117
Score: 4.1 Sequence: TTAATCTGGATCAA
Locus tag: STM1732
Name: ompW Funciton: outer membrane protein W; colicin S4 receptor; putative transporter |
|||
|
ompW
|
outer membrane protein W; colicin S4 receptor; putative transporter
|
||
|
Position: -264
Score: 5 Sequence: ATGATATATATCAA
Locus tag: STM0802
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: STM0803
Name: moaB Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: STM0804
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: STM0805
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: STM0806
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE |
|||
|
moaA
|
Molybdenum cofactor biosynthesis protein MoaA
|
||
|
moaB
|
Molybdenum cofactor biosynthesis protein MoaB
|
||
|
moaC
|
Molybdenum cofactor biosynthesis protein MoaC
|
||
|
moaD
|
Molybdenum cofactor biosynthesis protein MoaD
|
||
|
moaE
|
Molybdenum cofactor biosynthesis protein MoaE
|
||
|
Position: -126
Score: 3.9 Sequence: TTGATTTGACGCAA
Locus tag: STM1570
Name: fdnG Funciton: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
Locus tag: STM1569
Name: fdnH Funciton: Formate dehydrogenase O beta subunit (EC 1.2.1.2)
Locus tag: STM1568
Name: fdnI Funciton: Formate dehydrogenase N gamma subunit (EC 1.2.1.2) |
|||
|
fdnG
|
Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
|
||
|
fdnH
|
Formate dehydrogenase O beta subunit (EC 1.2.1.2)
|
||
|
fdnI
|
Formate dehydrogenase N gamma subunit (EC 1.2.1.2)
|
||
|
Position: -301
Score: 3.9 Sequence: TTGATTAAACACAG
Locus tag: STM1712
Name: acnA Funciton: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99) |
|||
|
acnA
|
Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
|
||
|
Position: -116
Score: 4.2 Sequence: GTGATATCAAACAA
Locus tag: STM3589
Name: pitA Funciton: Phosphate transporter, low-affinity |
|||
|
pitA
|
Phosphate transporter, low-affinity
|
||
|
Position: -89
Score: 3.7 Sequence: TCAATACAAATCAA
Locus tag: STM2840
Name: norV Funciton: Anaerobic nitric oxide reductase flavorubredoxin
Locus tag: STM2841
Name: norW Funciton: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
|||
|
norV
|
Anaerobic nitric oxide reductase flavorubredoxin
|
||
|
norW
|
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
|
||
|
Position: -249
Score: 5 Sequence: TTGTTCTACATCAA
Position: -218
Score: 4.2 Sequence: TTGATGCAAATCAC
Locus tag: STM4452
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: STM4451
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
|||
|
nrdD
|
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
|
||
|
nrdG
|
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
|
||
|
Position: -126
Score: 3.8 Sequence: TTGATCTACATCTC
Locus tag: STM4106
Name: katG Funciton: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) |
|||
|
katG
|
Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
|
||
|
Position: -169
Score: 4.2 Sequence: ATGACGTAAAACAA
Locus tag: STM3967
Name: ysgA Funciton: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) |
|||
|
ysgA
|
Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
|
||
|
Position: -213
Score: 3.9 Sequence: TCGAAATTAATCAA
Locus tag: STM0730
Name: gltA Funciton: Citrate synthase (EC 2.3.3.1) |
|||
|
gltA
|
Citrate synthase (EC 2.3.3.1)
|
||
|
Position: -116
Score: 4.7 Sequence: CTGATTTCAATCAA
Locus tag: STM0151
Name: pdhR Funciton: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Locus tag: STM0152
Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: STM0153
Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: STM0154
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
|||
|
pdhR
|
Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
|
||
|
aceE
|
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
|
||
|
aceF
|
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
|
||
|
lpdA
|
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
|
||
|
Position: -204
Score: 4.4 Sequence: TTGAGCCATATCAA
Locus tag: STM3505
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: STM3506
Name: feoB Funciton: Ferrous iron transport protein B
Locus tag: STM3507
Name: feoC Funciton: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family |
|||
|
feoA
|
Ferrous iron transport protein A
|
||
|
feoB
|
Ferrous iron transport protein B
|
||
|
feoC
|
Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
|
||
|
Position: -238
Score: 4.7 Sequence: TTGATTTAGATCAC
Locus tag: STM1749
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|||
|
adhE
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
|
||
|
Position: -72
Score: 3.5 Sequence: TTCACAAAAATCAG
Locus tag: STM4301
Name: dcuB Funciton: C4-dicarboxylate transporter DcuB
Locus tag: STM4300
Name: fumB Funciton: Fumarate hydratase class I, anaerobic (EC 4.2.1.2) |
|||
|
dcuB
|
C4-dicarboxylate transporter DcuB
|
||
|
fumB
|
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)
|
||
|
Position: -274
Score: 4.8 Sequence: TTGATTGTGATCAA
Position: -177
Score: 3.9 Sequence: CTGATGAAAATAAA
Locus tag: STM4304
Name: dcuS Funciton: Fumarate respiration sensor kinase protein DcuS
Locus tag: STM4303
Name: dcuR Funciton: Fumarate respiration transcriptional regulator DcuR |
|||
|
dcuS
|
Fumarate respiration sensor kinase protein DcuS
|
||
|
dcuR
|
Fumarate respiration transcriptional regulator DcuR
|
||
|
Position: -97
Score: 3.6 Sequence: TTACCTTTAATCAA
Locus tag: STM1934
Name: yecR Funciton: putative outer membrane lipoprotein |
|||
|
yecR
|
putative outer membrane lipoprotein
|
||
|
Position: -90
Score: 3.3 Sequence: CTTATTTACAAAAA
Locus tag: STM2261
Name: napF Funciton: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Locus tag: STM2260
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: STM2259
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: STM2258
Name: napG Funciton: Ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: STM2257
Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: STM2256
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: STM2255
Name: napC Funciton: Cytochrome c-type protein NapC
Locus tag: STM2254
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM2253
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM2252
Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM2251
Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM2250
Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM2249
Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: STM2248
Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM2247
Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH |
|||
|
napF
|
Ferredoxin-type protein NapF (periplasmic nitrate reductase)
|
||
|
napD
|
Periplasmic nitrate reductase component NapD
|
||
|
napA
|
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
|
||
|
napG
|
Ferredoxin-type protein NapG (periplasmic nitrate reductase)
|
||
|
napH
|
Polyferredoxin NapH (periplasmic nitrate reductase)
|
||
|
napB
|
Nitrate reductase cytochrome c550-type subunit
|
||
|
napC
|
Cytochrome c-type protein NapC
|
||
|
ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
||
|
ccmB
|
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
|
||
|
ccmC
|
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
||
|
ccmD
|
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
||
|
ccmE
|
Cytochrome c-type biogenesis protein CcmE, heme chaperone
|
||
|
ccmF
|
Cytochrome c heme lyase subunit CcmF
|
||
|
ccmG
|
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
|
||
|
ccmH
|
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
|
||
|
Position: -110
Score: 4.7 Sequence: TTGATACCAATCAA
Locus tag: STM3820
Name: null Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5)
Locus tag: STM3819
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM3818
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM3817
Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM3816
Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM3815
Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM3814
Name: ccmF Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: STM3813
Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM3812
Name: ccmH Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH |
|||
|
Cytochrome c551 peroxidase (EC 1.11.1.5)
|
|||
|
ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
||
|
ccmB
|
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
|
||
|
ccmC
|
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
||
|
ccmD
|
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
||
|
ccmE
|
Cytochrome c-type biogenesis protein CcmE, heme chaperone
|
||
|
ccmF
|
Cytochrome c heme lyase subunit CcmF
|
||
|
ccmG
|
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
|
||
|
ccmH
|
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
|
||
|
Position: -283
Score: 4.4 Sequence: TTGACTAACGTCAA
Locus tag: STM4514.S
Name: yjiH Funciton: putative inner membrane protein
Locus tag: STM4513
Name: yjiG Funciton: Putative membrane protein
Locus tag: STM4512
Name: iadA Funciton: Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase
Locus tag: STM4511
Name: yjiE Funciton: putative transcriptional regulator, LysR family |
|||
|
yjiH
|
putative inner membrane protein
|
||
|
yjiG
|
Putative membrane protein
|
||
|
iadA
|
Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase
|
||
|
yjiE
|
putative transcriptional regulator, LysR family
|
||
|
Position: -268
Score: 3.4 Sequence: TTTATTGATAATAA
Locus tag: STM0443
Name: cyoA Funciton: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: STM0442
Name: cyoB Funciton: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: STM0441
Name: cyoC Funciton: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: STM0440
Name: cyoD Funciton: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: STM0439
Name: cyoE Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB |
|||
|
cyoA
|
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
|
||
|
cyoB
|
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
|
||
|
cyoC
|
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
|
||
|
cyoD
|
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
|
||
|
cyoE
|
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
|
||
|
Position: -25
Score: 4.4 Sequence: TTGTTAAACAACAA
Locus tag: STM4325
Name: dcuA Funciton: Anaerobic C4-dicarboxylate transporter |
|||
|
dcuA
|
Anaerobic C4-dicarboxylate transporter
|
||
|
Position: -208
Score: 5.6 Sequence: TTGATTTAAATCAA
Position: -155
Score: 5.1 Sequence: TTGTTTTACATCAA
Locus tag: STM2647
Name: ung Funciton: Uracil-DNA glycosylase (EC 3.2.2.27) |
|||
|
ung
|
Uracil-DNA glycosylase (EC 3.2.2.27)
|
||
|
Position: -25
Score: 4.4 Sequence: TTGTTAAACAACAA
Locus tag: STM4325
Name: dcuA Funciton: C4-dicarboxylate transporter DcuA |
|||
|
dcuA
|
C4-dicarboxylate transporter DcuA
|
||
|
Position: -51
Score: 3.4 Sequence: CTGATAAAACGCAA
Locus tag: STM1299
Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|||
|
gdhA
|
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
|
||
|
Position: -83
Score: 3.8 Sequence: TCGCTTTACCTCAA
Locus tag: STM4265
Name: soxS Funciton: AraC-family transcriptional regulator |
|||
|
soxS
|
AraC-family transcriptional regulator
|
||
|
Position: -17
Score: 3.4 Sequence: TTGAGGTAAAGCGA
Locus tag: STM4266
Name: soxR Funciton: redox-sensitive transcriptional activator (MerR-family transcriptional regulator) |
|||
|
soxR
|
redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
|
||
|
Position: -116
Score: 3.7 Sequence: TTGACATGGATTAA
Locus tag: STM1499
Name: null Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: STM1498
Name: null Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: STM1497
Name: ynfG Funciton: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Locus tag: STM1496
Name: ynfH Funciton: Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
Locus tag: STM1495
Name: ynfI Funciton: Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD |
|||
|
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
|
|||
|
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
|
|||
|
ynfG
|
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
|
||
|
ynfH
|
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
|
||
|
ynfI
|
Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
|
||
|
Position: -33
Score: 4.7 Sequence: TTGACAAATATCAA
Locus tag: STM1660.S
Name: fnr Funciton: Fumarate and nitrate reduction regulatory protein |
|||
|
fnr
|
Fumarate and nitrate reduction regulatory protein
|
||
|
Position: -184
Score: 4.7 Sequence: TTGATTGAAATCAG
Locus tag: STM3245
Name: tdcA Funciton: Threonine catabolism transcriptional regulator TdcA, LysR family
Locus tag: STM3244
Name: tdcB Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: STM3243
Name: tdcC Funciton: L-threonine transporter, anaerobically inducible
Locus tag: STM3242
Name: tdcD Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: STM3241
Name: tdcE Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: STM3240
Name: tdcG Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG |
|||
|
tdcA
|
Threonine catabolism transcriptional regulator TdcA, LysR family
|
||
|
tdcB
|
Threonine dehydratase, catabolic (EC 4.3.1.19)
|
||
|
tdcC
|
L-threonine transporter, anaerobically inducible
|
||
|
tdcD
|
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
|
||
|
tdcE
|
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
|
||
|
tdcG
|
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
|
||
|
Position: -291
Score: 5.1 Sequence: TTGATATATGTCAA
Locus tag: STM4598
Name: arcA Funciton: Aerobic respiration control protein arcA |
|||
|
arcA
|
Aerobic respiration control protein arcA
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |