Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Salmonella typhimurium LT2

Properties
Regulator type: Transcription factor
TF locus tag: STM1660.S
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Enterobacteriales
Statistics of regulated genes:
- Genes 191
- Operons 68
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 685 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -349
Score: 5.3
Sequence: TTGATTTTAATCAA
Position: -297
Score: 3.9
Sequence: TTGTCCGTGATCAA
Locus tag: STM0740
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: STM0741
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
STM0740
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
STM0741
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Position: -143
Score: 4.7
Sequence: TTGATTAAAGACAA
Locus tag: STM4277
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: STM4278.S
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: STM4279
Name: nrfC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: STM4280
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: STM4281
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: STM4282
Name: nrfG
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
STM4277
nrfA
Nitrite reductase, cytochrome c(552)
STM4278.S
nrfB
Cytochrome c-type protein NrfB precursor
STM4279
nrfC
Nitrite reductase, Fe-S center subunit
STM4280
nrfD
Nitrite reductase, NrfD component
STM4281
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
STM4282
nrfG
Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
Position: -40
Score: 4.8
Sequence: TTGATATACATCAT
Locus tag: STM2556
Name: hmp
Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
STM2556
hmp
Nitric oxide dioxygenase (EC 1.14.12.17)
Position: -199
Score: 4
Sequence: TTCATTTTTATCAG
Locus tag: STM3538
Name: glgB
Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Locus tag: STM3537
Name: glgX
Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
Locus tag: STM3536
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: STM3535
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: STM3534
Name: glgP
Funciton: Glycogen phosphorylase (EC 2.4.1.1)
STM3538
glgB
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
STM3537
glgX
Glycogen debranching enzyme (EC 3.2.1.-)
STM3536
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
STM3535
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
STM3534
glgP
Glycogen phosphorylase (EC 2.4.1.1)
Position: -199
Score: 4.6
Sequence: TTGATGTAAATTAA
Locus tag: STM2328
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: STM2327
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: STM2326
Name: nuoD
Funciton: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
Locus tag: STM2325
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: STM2324
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: STM2323.S
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: STM2322
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: STM2321
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: STM2320
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: STM2319
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: STM2318
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: STM2317
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: STM2316.S
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
STM2328
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
STM2327
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
STM2326
nuoD
NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
STM2325
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
STM2324
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
STM2323.S
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
STM2322
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
STM2321
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
STM2320
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
STM2319
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
STM2318
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
STM2317
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
STM2316.S
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -122
Score: 4.2
Sequence: TTGTTTGAAATCAC
Locus tag: STM3872
Name: atpI
Funciton: ATP synthase protein I
Locus tag: STM3871
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: STM3870
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: STM3869
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: STM3868
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: STM3867
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: STM3866
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: STM3865
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: STM3864
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
STM3872
atpI
ATP synthase protein I
STM3871
atpB
ATP synthase A chain (EC 3.6.3.14)
STM3870
atpE
ATP synthase C chain (EC 3.6.3.14)
STM3869
atpF
ATP synthase B chain (EC 3.6.3.14)
STM3868
atpH
ATP synthase delta chain (EC 3.6.3.14)
STM3867
atpA
ATP synthase alpha chain (EC 3.6.3.14)
STM3866
atpG
ATP synthase gamma chain (EC 3.6.3.14)
STM3865
atpD
ATP synthase beta chain (EC 3.6.3.14)
STM3864
atpC
ATP synthase epsilon chain (EC 3.6.3.14)
Position: 10
Score: 3.6
Sequence: ATGTGAAAAAACAA
Locus tag: STM0732
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: STM0733
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: STM0734
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: STM0735
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
STM0732
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
STM0733
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
STM0734
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
STM0735
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -88
Score: 3.7
Sequence: TTGATGAAACTGAA
Locus tag: STM2855
Name: hypB
Funciton: [NiFe] hydrogenase nickel incorporation-associated protein HypB
Locus tag: STM2856
Name: hypC
Funciton: [NiFe] hydrogenase metallocenter assembly protein HypC
Locus tag: STM2857
Name: hypD
Funciton: [NiFe] hydrogenase metallocenter assembly protein HypD
Locus tag: STM2858
Name: hypE
Funciton: [NiFe] hydrogenase metallocenter assembly protein HypE
STM2855
hypB
[NiFe] hydrogenase nickel incorporation-associated protein HypB
STM2856
hypC
[NiFe] hydrogenase metallocenter assembly protein HypC
STM2857
hypD
[NiFe] hydrogenase metallocenter assembly protein HypD
STM2858
hypE
[NiFe] hydrogenase metallocenter assembly protein HypE
Position: -73
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: STM1765
Name: narK
Funciton: Nitrate/nitrite antiporter
STM1765
narK
Nitrate/nitrite antiporter
Position: -177
Score: 5.1
Sequence:
Position: -124
Score: 5.6
Sequence:
Locus tag: STM2646
Name: yfiD
Funciton: Stress-induced alternate pyruvate formate-lyase subunit
STM2646
yfiD
Stress-induced alternate pyruvate formate-lyase subunit
Position: -138
Score: 3.6
Sequence: TTCATCTTTAGCAA
Position: -101
Score: 4.1
Sequence: GTGATTTTAATCAG
Locus tag: STM0627
Name: dcuC
Funciton: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
STM0627
dcuC
C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Position: -92
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: STM2337
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
STM2337
ackA
Acetate kinase (EC 2.7.2.1)
Position: -375
Score: 4.1
Sequence: TTGTTAATGGTCAA
Locus tag: STM1227
Name: pepT
Funciton: Tripeptide aminopeptidase (EC 3.4.11.4)
STM1227
pepT
Tripeptide aminopeptidase (EC 3.4.11.4)
Position: -256
Score: 3.7
Sequence: TCGTTTTTTATCAT
Locus tag: STM2283
Name: glpT
Funciton: Glycerol-3-phosphate transporter
Locus tag: STM2282
Name: glpQ
Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
STM2283
glpT
Glycerol-3-phosphate transporter
STM2282
glpQ
Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Position: -281
Score: 5.5
Sequence: TTGATATAAATCAA
Locus tag: STM1766
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: STM1767
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
STM1766
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
STM1767
narL
Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -72
Score: 5.4
Sequence: TTGATTTACATCAA
Locus tag: STM3474
Name: nirB
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: STM3475
Name: nirD
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: STM3476
Name: nirC
Funciton: Nitrite transporter
Locus tag: STM3477
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
STM3474
nirB
Nitrite reductase, large subunit (EC 1.7.1.4)
STM3475
nirD
Nitrite reductase, small subunit (EC 1.7.1.4)
STM3476
nirC
Nitrite transporter
STM3477
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -103
Score: 4.6
Sequence: TTGATCCAGGTCAA
Locus tag: STM2498
Name: upp
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Locus tag: STM2497
Name: uraA2
Funciton: Uracil permease
STM2498
upp
Uracil phosphoribosyltransferase (EC 2.4.2.9)
STM2497
uraA2
Uracil permease
Position: -131
Score: 4.3
Sequence: TTGTCTTAAATCAT
Locus tag: STM1777
Name: hemA
Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: STM1776
Name: prfA
Funciton: Peptide chain release factor 1
Locus tag: STM1775
Name: prmC
Funciton: Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
STM1777
hemA
Glutamyl-tRNA reductase (EC 1.2.1.70)
STM1776
prfA
Peptide chain release factor 1
STM1775
prmC
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
Position: -143
Score: 5.1
Sequence: TTGACTTAAATCAA
Locus tag: STM2503
Name: yfgF
Funciton: Predicted cytochrome C-type biogenesis protein
STM2503
yfgF
Predicted cytochrome C-type biogenesis protein
Position: -227
Score: 4.2
Sequence: TTGATGGGTAACAA
Locus tag: STM0058
Name: citC
Funciton: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Locus tag: STM0059
Name: citD
Funciton: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Locus tag: STM0060
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: STM0061
Name: citF
Funciton: Citrate lyase alpha chain (EC 4.1.3.6)
Locus tag: STM0062
Name: citX
Funciton: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
Locus tag: STM0063
Name: citG
Funciton: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
STM0058
citC
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
STM0059
citD
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
STM0060
citE
Citrate lyase beta chain (EC 4.1.3.6)
STM0061
citF
Citrate lyase alpha chain (EC 4.1.3.6)
STM0062
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
STM0063
citG
2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
Position: -182
Score: 4.1
Sequence: GTGAAATAAATCAA
Locus tag: STM0624
Name: citC
Funciton: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Locus tag: STM0623
Name: citD
Funciton: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Locus tag: STM0622
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: STM0621
Name: citF
Funciton: Citrate lyase alpha chain (EC 4.1.3.6)
Locus tag: STM0620
Name: citX
Funciton: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
Locus tag: STM0619
Name: citG
Funciton: 2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
STM0624
citC
[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
STM0623
citD
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
STM0622
citE
Citrate lyase beta chain (EC 4.1.3.6)
STM0621
citF
Citrate lyase alpha chain (EC 4.1.3.6)
STM0620
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)
STM0619
citG
2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase (EC 2.7.8.25)
Position: -309
Score: 4.4
Sequence: TTGACCTGGATCAA
Locus tag: STM2499.S
Name: purM
Funciton: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Locus tag: STM2500
Name: purN
Funciton: Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
STM2499.S
purM
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
STM2500
purN
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
Position: -150
Score: 4.8
Sequence: TTGATGCACATCAA
Locus tag: STM1211
Name: ndh
Funciton: NADH dehydrogenase (EC 1.6.99.3)
STM1211
ndh
NADH dehydrogenase (EC 1.6.99.3)
Position: -146
Score: 4.8
Sequence: TTGATATATATCAT
Locus tag: STM0801
Name: ybhK
Funciton: Predicted transferase, NAD(P)-binding
STM0801
ybhK
Predicted transferase, NAD(P)-binding
Position: -126
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: STM4062
Name: pfkA
Funciton: 6-phosphofructokinase (EC 2.7.1.11)
STM4062
pfkA
6-phosphofructokinase (EC 2.7.1.11)
Position: -191
Score: 4.4
Sequence: TTAATCAAAATCAA
Locus tag: STM4343
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: STM4342
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: STM4341
Name: frdC
Funciton: Fumarate reductase subunit C
Locus tag: STM4340
Name: frdD
Funciton: Fumarate reductase subunit D
STM4343
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
STM4342
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
STM4341
frdC
Fumarate reductase subunit C
STM4340
frdD
Fumarate reductase subunit D
Position: -105
Score: 4.7
Sequence: TTGATCGTTATCAA
Locus tag: STM1764
Name: narG
Funciton: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Locus tag: STM1763
Name: narH
Funciton: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
Locus tag: STM1762
Name: narJ
Funciton: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
Locus tag: STM1761
Name: narI
Funciton: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
STM1764
narG
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
STM1763
narH
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
STM1762
narJ
Respiratory nitrate reductase delta chain (EC 1.7.99.4)
STM1761
narI
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
Position: -110
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: STM0937
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: STM0936
Name: hcr
Funciton: NADH oxidoreductase hcr (EC 1.-.-.-)
STM0937
hcp
Hydroxylamine reductase (EC 1.7.-.-)
STM0936
hcr
NADH oxidoreductase hcr (EC 1.-.-.-)
Position: -30
Score: 3.8
Sequence: ATGATAAAAAACGA
Locus tag: STM2284
Name: glpA
Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Locus tag: STM2285
Name: glpB
Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
Locus tag: STM2286
Name: glpC
Funciton: Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)
STM2284
glpA
Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
STM2285
glpB
Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
STM2286
glpC
Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)
Position: -74
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: STM0974
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
Locus tag: STM0973
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
STM0974
focA
Formate efflux transporter (TC 2.A.44 family)
STM0973
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -216
Score: 4.1
Sequence: TTGATTTATTTCAC
Locus tag: STM0625
Name: citA
Funciton: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
Locus tag: STM0626
Name: citB
Funciton: Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family
STM0625
citA
Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
STM0626
citB
Anaerobic citrate fermentation two-component regulatory system, response regulator CitB, OmpR family
Position: -96
Score: 4.2
Sequence:
Locus tag: STM0964
Name: dmsA
Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: STM0965
Name: dmsB
Funciton: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Locus tag: STM0966
Name: dmsC
Funciton: Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
STM0964
dmsA
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
STM0965
dmsB
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
STM0966
dmsC
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
Position: 16
Score: 3.7
Sequence: TCAATAAAGATCAA
Locus tag: STM3514
Name: malP
Funciton: Maltodextrin phosphorylase (EC 2.4.1.1)
Locus tag: STM3513
Name: malQ
Funciton: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
STM3514
malP
Maltodextrin phosphorylase (EC 2.4.1.1)
STM3513
malQ
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
Position: -110
Score: 4.7
Sequence: TTGATACCAATCAA
Locus tag: STM3820
Name: yhjA
Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5)
STM3820
yhjA
Cytochrome c551 peroxidase (EC 1.11.1.5)
Position: -69
Score: 4.4
Sequence: TTGACGCACATCAA
Locus tag: STM0844
Name: ybiY
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: STM0843
Name: ybiW
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
STM0844
ybiY
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
STM0843
ybiW
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -75
Score: 4
Sequence: TTGATCCAGGTCAT
Locus tag: STM3329
Name: yhcC
Funciton: COG1242: Predicted Fe-S oxidoreductase
STM3329
yhcC
COG1242: Predicted Fe-S oxidoreductase
Position: -347
Score: 3.3
Sequence: TTGACCGCCGTCAT
Locus tag: STM2830
Name: ydeJ
Funciton: Competence/damage-inducible protein CinA
STM2830
ydeJ
Competence/damage-inducible protein CinA
Position: -238
Score: 3.6
Sequence: GTCATATGCATCAA
Locus tag: STM1514
Name: ydeJ
Funciton: Competence/damage-inducible protein CinA
STM1514
ydeJ
Competence/damage-inducible protein CinA
Position: -117
Score: 4.1
Sequence: TTAATCTGGATCAA
Locus tag: STM1732
Name: ompW
Funciton: outer membrane protein W; colicin S4 receptor; putative transporter
STM1732
ompW
outer membrane protein W; colicin S4 receptor; putative transporter
Position: -264
Score: 5
Sequence: ATGATATATATCAA
Locus tag: STM0802
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: STM0803
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: STM0804
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: STM0805
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: STM0806
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
STM0802
moaA
Molybdenum cofactor biosynthesis protein MoaA
STM0803
moaB
Molybdenum cofactor biosynthesis protein MoaB
STM0804
moaC
Molybdenum cofactor biosynthesis protein MoaC
STM0805
moaD
Molybdenum cofactor biosynthesis protein MoaD
STM0806
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -126
Score: 3.9
Sequence: TTGATTTGACGCAA
Locus tag: STM1570
Name: fdnG
Funciton: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
Locus tag: STM1569
Name: fdnH
Funciton: Formate dehydrogenase O beta subunit (EC 1.2.1.2)
Locus tag: STM1568
Name: fdnI
Funciton: Formate dehydrogenase N gamma subunit (EC 1.2.1.2)
STM1570
fdnG
Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
STM1569
fdnH
Formate dehydrogenase O beta subunit (EC 1.2.1.2)
STM1568
fdnI
Formate dehydrogenase N gamma subunit (EC 1.2.1.2)
Position: -301
Score: 3.9
Sequence: TTGATTAAACACAG
Locus tag: STM1712
Name: acnA
Funciton: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
STM1712
acnA
Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -116
Score: 4.2
Sequence: GTGATATCAAACAA
Locus tag: STM3589
Name: pitA
Funciton: Phosphate transporter, low-affinity
STM3589
pitA
Phosphate transporter, low-affinity
Position: -89
Score: 3.7
Sequence: TCAATACAAATCAA
Locus tag: STM2840
Name: norV
Funciton: Anaerobic nitric oxide reductase flavorubredoxin
Locus tag: STM2841
Name: norW
Funciton: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
STM2840
norV
Anaerobic nitric oxide reductase flavorubredoxin
STM2841
norW
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)
Position: -249
Score: 5
Sequence: TTGTTCTACATCAA
Position: -218
Score: 4.2
Sequence: TTGATGCAAATCAC
Locus tag: STM4452
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: STM4451
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
STM4452
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
STM4451
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -126
Score: 3.8
Sequence: TTGATCTACATCTC
Locus tag: STM4106
Name: katG
Funciton: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
STM4106
katG
Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Position: -169
Score: 4.2
Sequence: ATGACGTAAAACAA
Locus tag: STM3967
Name: ysgA
Funciton: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
STM3967
ysgA
Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Position: -213
Score: 3.9
Sequence: TCGAAATTAATCAA
Locus tag: STM0730
Name: gltA
Funciton: Citrate synthase (EC 2.3.3.1)
STM0730
gltA
Citrate synthase (EC 2.3.3.1)
Position: -116
Score: 4.7
Sequence: CTGATTTCAATCAA
Locus tag: STM0151
Name: pdhR
Funciton: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Locus tag: STM0152
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: STM0153
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: STM0154
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
STM0151
pdhR
Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
STM0152
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
STM0153
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
STM0154
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
Position: -204
Score: 4.4
Sequence: TTGAGCCATATCAA
Locus tag: STM3505
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: STM3506
Name: feoB
Funciton: Ferrous iron transport protein B
Locus tag: STM3507
Name: feoC
Funciton: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
STM3505
feoA
Ferrous iron transport protein A
STM3506
feoB
Ferrous iron transport protein B
STM3507
feoC
Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
Position: -238
Score: 4.7
Sequence: TTGATTTAGATCAC
Locus tag: STM1749
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
STM1749
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -72
Score: 3.5
Sequence: TTCACAAAAATCAG
Locus tag: STM4301
Name: dcuB
Funciton: C4-dicarboxylate transporter DcuB
Locus tag: STM4300
Name: fumB
Funciton: Fumarate hydratase class I, anaerobic (EC 4.2.1.2)
STM4301
dcuB
C4-dicarboxylate transporter DcuB
STM4300
fumB
Fumarate hydratase class I, anaerobic (EC 4.2.1.2)
Position: -274
Score: 4.8
Sequence: TTGATTGTGATCAA
Position: -177
Score: 3.9
Sequence: CTGATGAAAATAAA
Locus tag: STM4304
Name: dcuS
Funciton: Fumarate respiration sensor kinase protein DcuS
Locus tag: STM4303
Name: dcuR
Funciton: Fumarate respiration transcriptional regulator DcuR
STM4304
dcuS
Fumarate respiration sensor kinase protein DcuS
STM4303
dcuR
Fumarate respiration transcriptional regulator DcuR
Position: -97
Score: 3.6
Sequence: TTACCTTTAATCAA
Locus tag: STM1934
Name: yecR
Funciton: putative outer membrane lipoprotein
STM1934
yecR
putative outer membrane lipoprotein
Position: -90
Score: 3.3
Sequence: CTTATTTACAAAAA
Locus tag: STM2261
Name: napF
Funciton: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Locus tag: STM2260
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: STM2259
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: STM2258
Name: napG
Funciton: Ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: STM2257
Name: napH
Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: STM2256
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: STM2255
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: STM2254
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM2253
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM2252
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM2251
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM2250
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM2249
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: STM2248
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM2247
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
STM2261
napF
Ferredoxin-type protein NapF (periplasmic nitrate reductase)
STM2260
napD
Periplasmic nitrate reductase component NapD
STM2259
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
STM2258
napG
Ferredoxin-type protein NapG (periplasmic nitrate reductase)
STM2257
napH
Polyferredoxin NapH (periplasmic nitrate reductase)
STM2256
napB
Nitrate reductase cytochrome c550-type subunit
STM2255
napC
Cytochrome c-type protein NapC
STM2254
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
STM2253
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
STM2252
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
STM2251
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
STM2250
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
STM2249
ccmF
Cytochrome c heme lyase subunit CcmF
STM2248
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
STM2247
ccmH
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Position: -110
Score: 4.7
Sequence: TTGATACCAATCAA
Locus tag: STM3820
Name: null
Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5)
Locus tag: STM3819
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM3818
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM3817
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM3816
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM3815
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM3814
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: STM3813
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM3812
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
STM3820
Cytochrome c551 peroxidase (EC 1.11.1.5)
STM3819
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
STM3818
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
STM3817
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
STM3816
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
STM3815
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
STM3814
ccmF
Cytochrome c heme lyase subunit CcmF
STM3813
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
STM3812
ccmH
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Position: -283
Score: 4.4
Sequence: TTGACTAACGTCAA
Locus tag: STM4514.S
Name: yjiH
Funciton: putative inner membrane protein
Locus tag: STM4513
Name: yjiG
Funciton: Putative membrane protein
Locus tag: STM4512
Name: iadA
Funciton: Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase
Locus tag: STM4511
Name: yjiE
Funciton: putative transcriptional regulator, LysR family
STM4514.S
yjiH
putative inner membrane protein
STM4513
yjiG
Putative membrane protein
STM4512
iadA
Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase
STM4511
yjiE
putative transcriptional regulator, LysR family
Position: -268
Score: 3.4
Sequence: TTTATTGATAATAA
Locus tag: STM0443
Name: cyoA
Funciton: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: STM0442
Name: cyoB
Funciton: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: STM0441
Name: cyoC
Funciton: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: STM0440
Name: cyoD
Funciton: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: STM0439
Name: cyoE
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
STM0443
cyoA
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
STM0442
cyoB
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
STM0441
cyoC
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
STM0440
cyoD
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
STM0439
cyoE
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Position: -25
Score: 4.4
Sequence: TTGTTAAACAACAA
Locus tag: STM4325
Name: dcuA
Funciton: Anaerobic C4-dicarboxylate transporter
STM4325
dcuA
Anaerobic C4-dicarboxylate transporter
Position: -208
Score: 5.6
Sequence: TTGATTTAAATCAA
Position: -155
Score: 5.1
Sequence: TTGTTTTACATCAA
Locus tag: STM2647
Name: ung
Funciton: Uracil-DNA glycosylase (EC 3.2.2.27)
STM2647
ung
Uracil-DNA glycosylase (EC 3.2.2.27)
Position: -25
Score: 4.4
Sequence: TTGTTAAACAACAA
Locus tag: STM4325
Name: dcuA
Funciton: C4-dicarboxylate transporter DcuA
STM4325
dcuA
C4-dicarboxylate transporter DcuA
Position: -51
Score: 3.4
Sequence: CTGATAAAACGCAA
Locus tag: STM1299
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
STM1299
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -83
Score: 3.8
Sequence: TCGCTTTACCTCAA
Locus tag: STM4265
Name: soxS
Funciton: AraC-family transcriptional regulator
STM4265
soxS
AraC-family transcriptional regulator
Position: -17
Score: 3.4
Sequence: TTGAGGTAAAGCGA
Locus tag: STM4266
Name: soxR
Funciton: redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
STM4266
soxR
redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
Position: -116
Score: 3.7
Sequence: TTGACATGGATTAA
Locus tag: STM1499
Name: null
Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: STM1498
Name: null
Funciton: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Locus tag: STM1497
Name: ynfG
Funciton: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Locus tag: STM1496
Name: ynfH
Funciton: Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
Locus tag: STM1495
Name: ynfI
Funciton: Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
STM1499
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
STM1498
Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
STM1497
ynfG
Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
STM1496
ynfH
Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)
STM1495
ynfI
Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD
Position: -33
Score: 4.7
Sequence: TTGACAAATATCAA
Locus tag: STM1660.S
Name: fnr
Funciton: Fumarate and nitrate reduction regulatory protein
STM1660.S
fnr
Fumarate and nitrate reduction regulatory protein
Position: -184
Score: 4.7
Sequence: TTGATTGAAATCAG
Locus tag: STM3245
Name: tdcA
Funciton: Threonine catabolism transcriptional regulator TdcA, LysR family
Locus tag: STM3244
Name: tdcB
Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: STM3243
Name: tdcC
Funciton: L-threonine transporter, anaerobically inducible
Locus tag: STM3242
Name: tdcD
Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: STM3241
Name: tdcE
Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: STM3240
Name: tdcG
Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
STM3245
tdcA
Threonine catabolism transcriptional regulator TdcA, LysR family
STM3244
tdcB
Threonine dehydratase, catabolic (EC 4.3.1.19)
STM3243
tdcC
L-threonine transporter, anaerobically inducible
STM3242
tdcD
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
STM3241
tdcE
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
STM3240
tdcG
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
Position: -291
Score: 5.1
Sequence: TTGATATATGTCAA
Locus tag: STM4598
Name: arcA
Funciton: Aerobic respiration control protein arcA
STM4598
arcA
Aerobic respiration control protein arcA
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