Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Salmonella typhimurium LT2

Properties
Regulator type: Transcription factor
TF locus tag: STM3466
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Enterobacteriales
Statistics of regulated genes:
- Genes 401
- Operons 207
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2301 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -159
Score: 3.1
Sequence: TACATTGACGTACTGCATGTAT
Locus tag: STM3466
Name: crp
Funciton: cyclic AMP receptor protein
STM3466
crp
cyclic AMP receptor protein
Position: -262
Score: 4.8
Sequence: TTAAGTGACCGAAATCACACTT
Position: -240
Score: 3.9
Sequence: AAAAATGATCTAAAACAAAAAT
Locus tag: STM2391
Name: fadL
Funciton: Long-chain fatty acid transport protein
STM2391
fadL
Long-chain fatty acid transport protein
Position: -200
Score: 3.9
Sequence: CATTGCGACGGCCTTCAAAAAA
Locus tag: STM3090
Name: metK
Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
STM3090
metK
S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -106
Score: 3.8
Sequence: TTCTGTGACACTCCTCAGCATT
Locus tag: STM2553
Name: csiE
Funciton: Stationary phase inducible protein CsiE
STM2553
csiE
Stationary phase inducible protein CsiE
Position: -270
Score: 3.7
Sequence: TAATCTTATTATCATCAAACAT
Locus tag: STM2924
Name: rpoS
Funciton: RNA polymerase sigma factor RpoS
STM2924
rpoS
RNA polymerase sigma factor RpoS
Position: -164
Score: 4.2
Sequence: ACATGTGAGCGGGATCAAATTC
Locus tag: STM2511
Name: guaB
Funciton: inosine-5'-monophosphate dehydrogenase
Locus tag: STM2510
Name: guaA
Funciton: bifunctional GMP synthase/glutamine amidotransferase protein
STM2511
guaB
inosine-5'-monophosphate dehydrogenase
STM2510
guaA
bifunctional GMP synthase/glutamine amidotransferase protein
Position: -157
Score: 3.5
Sequence: AAACATGATTTCTGTAAAATTG
Position: -120
Score: 3.2
Sequence: TTTACTGATTTCAATCAAAACC
Position: -79
Score: 3
Sequence: CTTATTAAGCTTTCTCACGAAA
Position: -54
Score: 3.4
Sequence: TAATGGGACAGGTTCCAGATAA
Locus tag: STM0151
Name: pdhR
Funciton: Transcriptional repressor for pyruvate dehydrogenase complex
Locus tag: STM0152
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: STM0153
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
STM0151
pdhR
Transcriptional repressor for pyruvate dehydrogenase complex
STM0152
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
STM0153
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Position: -37
Score: 5.3
Sequence: TTATGTGATCTAAATCACTTTT
Locus tag: STM3367
Name: aaeR
Funciton: LysR-family transcriptional regulator
STM3367
aaeR
LysR-family transcriptional regulator
Position: -100
Score: 4.1
Sequence: TTGCGTGATCTGTCGCCCAAAT
Locus tag: STM4275
Name: acs
Funciton: acetyl-coenzyme A synthetase
Locus tag: STM4274
Name: yjcH
Funciton: membrane protein
Locus tag: STM4273
Name: actP
Funciton: acetate permease
STM4275
acs
acetyl-coenzyme A synthetase
STM4274
yjcH
membrane protein
STM4273
actP
acetate permease
Position: -220
Score: 3.6
Sequence: AAAGGTGAGCCAGGGCAGATTT
Position: -105
Score: 4
Sequence: AATTGCGATCCAGAGCAATTTT
Locus tag: STM3217
Name: aer
Funciton: aerotaxis sensor receptor, senses cellular redox state or proton motive force
STM3217
aer
aerotaxis sensor receptor, senses cellular redox state or proton motive force
Position: -125
Score: 4.3
Sequence: TTTTGTTATCCATCTCTAAAAA
Locus tag: STM3106
Name: ansB
Funciton: periplasmic L-asparaginase II
STM3106
ansB
periplasmic L-asparaginase II
Position: -139
Score: 3.7
Sequence: TGTTGTGATCATCCTCTTTTTT
Locus tag: STM4249
Name: aphA
Funciton: acid phosphatase/phosphotransferase
STM4249
aphA
acid phosphatase/phosphotransferase
Position: -131
Score: 3.8
Sequence: ATATTTGCACAGCGTCACACTT
Locus tag: STM0103
Name: araB
Funciton: L-ribulokinase
Locus tag: STM0102
Name: araA
Funciton: L-arabinose isomerase
Locus tag: STM0101
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase
STM0103
araB
L-ribulokinase
STM0102
araA
L-arabinose isomerase
STM0101
araD
L-ribulose-5-phosphate 4-epimerase
Position: -231
Score: 4.5
Sequence: AAGTGTGACGCTGTGCAAATAT
Locus tag: STM0104
Name: araC
Funciton: DNA-binding transcriptional dual regulator
STM0104
araC
DNA-binding transcriptional dual regulator
Position: -271
Score: 4
Sequence: TTTTATGATCTCATTAGCATAG
Position: -131
Score: 4.9
Sequence: AAGTGTAATATCCATCACATAT
Locus tag: STM3016
Name: araE
Funciton: sugar transporter
STM3016
araE
sugar transporter
Position: -66
Score: 3.9
Sequence: TAATGTATTTTTATTCATAATT
Locus tag: STM4120
Name: argE
Funciton: acetylornithine deacetylase
STM4120
argE
acetylornithine deacetylase
Position: -71
Score: 3.9
Sequence: TTTTGTGGTATGGTTTAAACAT
Locus tag: STM2670
Name: aroF
Funciton: phospho-2-dehydro-3-deoxyheptonate aldolase
Locus tag: STM2669
Name: tyrA
Funciton: T-protein [includes: chorismate mutase and prephenate dehydrogenase]
STM2670
aroF
phospho-2-dehydro-3-deoxyheptonate aldolase
STM2669
tyrA
T-protein [includes: chorismate mutase and prephenate dehydrogenase]
Position: -106
Score: 4.3
Sequence: AGGTGTGACACGCCTCGCACTT
Position: -64
Score: 4
Sequence: TATCGTGATGCCCATCACTTCC
Locus tag: STM1347
Name: aroH
Funciton: phospho-2-dehydro-3-deoxyheptonate aldolase
STM1347
aroH
phospho-2-dehydro-3-deoxyheptonate aldolase
Position: -209
Score: 4.2
Sequence: AGCGGTGACCTATTTCACAAAA
Position: -159
Score: 4.2
Sequence: TTAAGTGATCCAGATTACGGTA
Locus tag: STM4326
Name: aspA
Funciton: aspartate ammonia-lyase
Locus tag: STM4325
Name: dcuA
Funciton: anaerobic C-4-dicarboxylate symporter
STM4326
aspA
aspartate ammonia-lyase
STM4325
dcuA
anaerobic C-4-dicarboxylate symporter
Position: -262
Score: 4.6
Sequence: ATGTGTGATCTGGTGCACGCTT
Position: -211
Score: 4.1
Sequence: TTTTGTACGATCGTTCACACTT
Locus tag: STM3872
Name: atpI
Funciton: ATP synthase subunit I
Locus tag: STM3871
Name: atpB
Funciton: ATP synthase subunit A
Locus tag: STM3870
Name: atpE
Funciton: ATP synthase subunit C
Locus tag: STM3869
Name: atpF
Funciton: ATP synthase subunit B
Locus tag: STM3868
Name: atpH
Funciton: ATP synthase subunit D
Locus tag: STM3867
Name: atpA
Funciton: ATP synthase subunit A
Locus tag: STM3866
Name: atpG
Funciton: ATP synthase subunit C
Locus tag: STM3865
Name: atpD
Funciton: ATP synthase subunit B
Locus tag: STM3864
Name: atpC
Funciton: ATP synthase epsilon subunit
STM3872
atpI
ATP synthase subunit I
STM3871
atpB
ATP synthase subunit A
STM3870
atpE
ATP synthase subunit C
STM3869
atpF
ATP synthase subunit B
STM3868
atpH
ATP synthase subunit D
STM3867
atpA
ATP synthase subunit A
STM3866
atpG
ATP synthase subunit C
STM3865
atpD
ATP synthase subunit B
STM3864
atpC
ATP synthase epsilon subunit
Position: -276
Score: 3.7
Sequence: AATTGTTATTTAATTTAACGTT
Locus tag: STM1834
Name: b1821
Funciton: hypothetical protein
STM1834
b1821
hypothetical protein
Position: -70
Score: 5.5
Sequence: AAATGTGATTAATATCACATTA
Position: -34
Score: 4.4
Sequence: TCATATGACTTACATCACAAAA
Locus tag: STM1994
Name: b1963
Funciton: orf, hypothetical protein
Locus tag: STM1993
Name: yedJ
Funciton: hypothetical protein
STM1994
b1963
orf, hypothetical protein
STM1993
yedJ
hypothetical protein
Position: -168
Score: 3.8
Sequence: AAATGTGATGCACCACGATATT
Position: -103
Score: 4.6
Sequence: CTTAGTGATCTACCTCACCTTT
Locus tag: STM2470
Name: b2462
Funciton: putative carboxysome structural protein, ethanol utilization
Locus tag: STM2469
Name: eutP
Funciton: putative ethanolamine utilization protein
Locus tag: STM2468
Name: eutQ
Funciton: hypothetical protein
Locus tag: STM2467
Name: eutT
Funciton: predicted cobalamin adenosyltransferase in ethanolamine utilization
Locus tag: STM2466
Name: eutI
Funciton: predicted phosphotransacetylase subunit
Locus tag: STM2465
Name: cchA
Funciton: detox protein
Locus tag: STM2464
Name: cchB
Funciton: hypothetical protein
Locus tag: STM2463
Name: eutE
Funciton: ethanolamine utilization protein
Locus tag: STM2462
Name: eutJ
Funciton: ethanolamine utilization protein
Locus tag: STM2461
Name: eutG
Funciton: ethanolamine utilization enzyme
STM2470
b2462
putative carboxysome structural protein, ethanol utilization
STM2469
eutP
putative ethanolamine utilization protein
STM2468
eutQ
hypothetical protein
STM2467
eutT
predicted cobalamin adenosyltransferase in ethanolamine utilization
STM2466
eutI
predicted phosphotransacetylase subunit
STM2465
cchA
detox protein
STM2464
cchB
hypothetical protein
STM2463
eutE
ethanolamine utilization protein
STM2462
eutJ
ethanolamine utilization protein
STM2461
eutG
ethanolamine utilization enzyme
Position: -189
Score: 4.4
Sequence: ATTTGCGATAAGCACCACATTT
Locus tag: STM3663
Name: bax
Funciton: hypothetical protein
STM3663
bax
hypothetical protein
Position: -167
Score: 4.5
Sequence: AAGTGTGACGAAGATAACAGAA
Locus tag: STM0074
Name: caiT
Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: STM0073
Name: caiA
Funciton: crotonobetainyl-CoA dehydrogenase
Locus tag: STM0072
Name: caiB
Funciton: crotonobetainyl-CoA:carnitine CoA-transferase
Locus tag: STM0071
Name: caiC2
Funciton: crotonobetaine/carnitine-CoA ligase
Locus tag: STM0070
Name: caiD
Funciton: carnitinyl-CoA dehydratase
Locus tag: STM0069
Name: caiE
Funciton: hypothetical protein
STM0074
caiT
L-carnitine/gamma-butyrobetaine antiporter
STM0073
caiA
crotonobetainyl-CoA dehydrogenase
STM0072
caiB
crotonobetainyl-CoA:carnitine CoA-transferase
STM0071
caiC2
crotonobetaine/carnitine-CoA ligase
STM0070
caiD
carnitinyl-CoA dehydratase
STM0069
caiE
hypothetical protein
Position: -128
Score: 4.2
Sequence: ATTTGCGATACGTCGCGCATTT
Position: -78
Score: 4.8
Sequence: CAATGAGATTTAGATCACATAT
Locus tag: STM2183
Name: cdd
Funciton: cytidine deaminase
STM2183
cdd
cytidine deaminase
Position: -250
Score: 3.9
Sequence: TTTTGTGCCTGCCATAACCTTA
Position: -203
Score: 3.9
Sequence: AAATGTGAGGGGGGTCATAACG
Locus tag: STM1312
Name: chbB
Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Locus tag: STM1313
Name: chbC
Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIC component
Locus tag: STM1314
Name: chbA
Funciton: N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
Locus tag: STM1315
Name: chbR
Funciton: DNA-binding transcriptional dual regulator
Locus tag: STM1316
Name: chbF
Funciton: 6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
Locus tag: STM1317
Name: chbG
Funciton: hypothetical protein
STM1312
chbB
N,N'-diacetylchitobiose-specific PTS system , EIIB component
STM1313
chbC
N,N'-diacetylchitobiose-specific PTS system , EIIC component
STM1314
chbA
N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
STM1315
chbR
DNA-binding transcriptional dual regulator
STM1316
chbF
6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
STM1317
chbG
hypothetical protein
Position: -164
Score: 4
Sequence: AAATTTGAAGCAGTTAACGCTA
Position: -104
Score: 3.6
Sequence: AGATGTTAGTTATCTATCAATT
Locus tag: STM0944
Name: clpS
Funciton: ATP-dependent Clp protease adaptor protein
Locus tag: STM0945
Name: clpA
Funciton: ATP-dependent CLP protease ATP-binding subunit
STM0944
clpS
ATP-dependent Clp protease adaptor protein
STM0945
clpA
ATP-dependent CLP protease ATP-binding subunit
Position: -145
Score: 3.7
Sequence: TTCTGTGAACACTCGCAAAAAA
Locus tag: STM4403
Name: cpdB
Funciton: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
STM4403
cpdB
2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Position: -181
Score: 4
Sequence: TAGCGTTAACTGCTTCAAATTT
Locus tag: STM0943
Name: cspD
Funciton: cold shock-like protein
STM0943
cspD
cold shock-like protein
Position: -114
Score: 4.3
Sequence: TAACGCGATATTTATCACTTTT
Locus tag: STM0629
Name: cspE
Funciton: cold shock protein E
STM0629
cspE
cold shock protein E
Position: -193
Score: 5.1
Sequence: TTTTGTGAGCTAATTCGCATTA
Position: -170
Score: 3.9
Sequence: CAAAGTGATATAACACTCATTT
Locus tag: STM4398
Name: cycA2
Funciton: D-alanine/D-serine/glycine permease
STM4398
cycA2
D-alanine/D-serine/glycine permease
Position: -256
Score: 3.7
Sequence: TAAATTGATCGCTGTCGAAAAA
Locus tag: STM0740
Name: cydA
Funciton: cytochrome d terminal oxidase, polypeptide subunit I
Locus tag: STM0741
Name: cydB
Funciton: cytochrome D ubiquinol oxidase subunit II
Locus tag: STM0742
Name: ybgT
Funciton: hypothetical protein
Locus tag: STM0743
Name: ybgE
Funciton: hypothetical protein
STM0740
cydA
cytochrome d terminal oxidase, polypeptide subunit I
STM0741
cydB
cytochrome D ubiquinol oxidase subunit II
STM0742
ybgT
hypothetical protein
STM0743
ybgE
hypothetical protein
Position: -144
Score: 3.9
Sequence: TTTTTTGCGAGTGTTCACAGAA
Locus tag: STM4404
Name: cysQ
Funciton: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
STM4404
cysQ
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Position: -95
Score: 4.8
Sequence: AAATGTGCCTTGTGTCACATTT
Locus tag: STM2062
Name: dacD2
Funciton: D-alanyl-D-alanine carboxypeptidase
STM2062
dacD2
D-alanyl-D-alanine carboxypeptidase
Position: -107
Score: 4.6
Sequence: ATATGTGAAGCACGTCACCATA
Locus tag: STM1803
Name: dadA
Funciton: D-amino acid dehydrogenase small subunit
Locus tag: STM1802
Name: dadX
Funciton: alanine racemase
STM1803
dadA
D-amino acid dehydrogenase small subunit
STM1802
dadX
alanine racemase
Position: -145
Score: 4.1
Sequence: TTGTGCGAGCCAGCTCAAACTT
Locus tag: STM3614
Name: dctA
Funciton: C4-dicarboxylate transport protein
STM3614
dctA
C4-dicarboxylate transport protein
Position: -154
Score: 3.9
Sequence: CTTTTTGATTGCCATCACCTTC
Position: -99
Score: 4.4
Sequence: TACTTTGAGCCGGTTCACACTT
Locus tag: STM3280.S
Name: deaD
Funciton: ATP-independent RNA helicase
STM3280.S
deaD
ATP-independent RNA helicase
Position: -133
Score: 4.9
Sequence: TAATTTGATTCAGATCTCATTA
Position: -80
Score: 4.2
Sequence: AACTGTGATGTATATCGAAGTG
Locus tag: STM4567
Name: deoC
Funciton: 2-deoxyribose-5-phosphate aldolase
Locus tag: STM4568
Name: deoA
Funciton: thymidine phosphorylase
Locus tag: STM4569
Name: deoB
Funciton: phosphopentomutase
STM4567
deoC
2-deoxyribose-5-phosphate aldolase
STM4568
deoA
thymidine phosphorylase
STM4569
deoB
phosphopentomutase
Position: -154
Score: 4.2
Sequence: TTTTGTGATCTAAATTGTAGTA
Locus tag: STM3830
Name: dgoR
Funciton: GntR domain protein
Locus tag: STM3829
Name: dgoK
Funciton: 2-dehydro-3-deoxygalactonokinase
Locus tag: STM3828
Name: dgoA1
Funciton: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
Locus tag: STM3827
Name: dgoT
Funciton: D-galactonate transport
STM3830
dgoR
GntR domain protein
STM3829
dgoK
2-dehydro-3-deoxygalactonokinase
STM3828
dgoA1
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
STM3827
dgoT
D-galactonate transport
Position: -142
Score: 3.8
Sequence: TGATGTAAATTGAATCAACTAT
Position: -124
Score: 4.5
Sequence: CTATGTGATTTCCATCTAATAT
Position: -94
Score: 4.2
Sequence: TTTTGCGATATGGTTCATTTTA
Locus tag: STM3800
Name: dsdC
Funciton: DNA-binding transcriptional dual regulator
STM3800
dsdC
DNA-binding transcriptional dual regulator
Position: -153
Score: 4
Sequence: TAAAATGAACCATATCGCAAAA
Position: -123
Score: 4.2
Sequence: ATATTAGATGGAAATCACATAG
Locus tag: STM3801
Name: dsdX
Funciton: DsdX permease
Locus tag: STM3802
Name: dsdA
Funciton: D-serine dehydratase
STM3801
dsdX
DsdX permease
STM3802
dsdA
D-serine dehydratase
Position: -213
Score: 5
Sequence: AAATGTGATGCAGGTCAGATAA
Locus tag: STM3070
Name: epd
Funciton: D-erythrose 4-phosphate dehydrogenase
Locus tag: STM3069
Name: pgk
Funciton: phosphoglycerate kinase
STM3070
epd
D-erythrose 4-phosphate dehydrogenase
STM3069
pgk
phosphoglycerate kinase
Position: -131
Score: 3.7
Sequence: AATAGTGACGCGCTTCGCAACC
Locus tag: STM1818
Name: fadD
Funciton: long-chain-fatty-acid--CoA ligase
Locus tag: STM1817
Name: rnd
Funciton: ribonuclease D
STM1818
fadD
long-chain-fatty-acid--CoA ligase
STM1817
rnd
ribonuclease D
Position: -113
Score: 4.3
Sequence: TTTTTTGAATCCCATCACAATC
Locus tag: STM3219
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
STM3219
fadH
2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Position: -21
Score: 3.8
Sequence: CTGTGTAATGGAAATCTCACTA
Locus tag: STM1805
Name: fadR
Funciton: fatty acid metabolism regulator
STM1805
fadR
fatty acid metabolism regulator
Position: -120
Score: 4.4
Sequence: TGATGTGACGTTAATCACTCTA
Locus tag: STM0529
Name: fdrA
Funciton: membrane protein FdrA
Locus tag: STM0530
Name: ylbE
Funciton: hypothetical protein
Locus tag: STM0531
Name: ylbF
Funciton: hypothetical protein
Locus tag: STM0532
Name: ybcF
Funciton: carbamate
STM0529
fdrA
membrane protein FdrA
STM0530
ylbE
hypothetical protein
STM0531
ylbF
hypothetical protein
STM0532
ybcF
carbamate
Position: -281
Score: 3.8
Sequence: ATTTTTGCTTTATTTATCAATT
Position: -196
Score: 3.7
Sequence: AATATTGAAAATTTTCATATTT
Position: -157
Score: 4
Sequence: ATTGGTGAGGTGCGTAACACTA
Locus tag: STM0075
Name: fixA
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: STM0076
Name: fixB
Funciton: putative electron transfer flavoprotein, carnitine metabolism
Locus tag: STM0077
Name: fixC
Funciton: related to carnitine metabolism
Locus tag: STM0078
Name: fixX
Funciton: ferredoxin-like protein
Locus tag: STM0079
Name: yaaU
Funciton: putative MFS family transport protein
STM0075
fixA
electron transfer flavoprotein, beta subunit
STM0076
fixB
putative electron transfer flavoprotein, carnitine metabolism
STM0077
fixC
related to carnitine metabolism
STM0078
fixX
ferredoxin-like protein
STM0079
yaaU
putative MFS family transport protein
Position: -285
Score: 5.8
Sequence: ATATGTGATCTGCATCACATAT
Locus tag: STM1925
Name: flhD
Funciton: DNA-binding transcriptional dual regulator with FlhC
Locus tag: STM1924.S
Name: flhC
Funciton: DNA-binding transcriptional dual regulator with FlhD
STM1925
flhD
DNA-binding transcriptional dual regulator with FlhC
STM1924.S
flhC
DNA-binding transcriptional dual regulator with FlhD
Position: -78
Score: 4.4
Sequence: AGATATGATCTATATCAAATTC
Locus tag: STM0974
Name: focA
Funciton: formate transporter
Locus tag: STM0973
Name: pflB
Funciton: formate acetyltransferase
STM0974
focA
formate transporter
STM0973
pflB
formate acetyltransferase
Position: -177
Score: 4.6
Sequence: AAATGTGCTTCACCTCAAAAAA
Locus tag: STM2206
Name: fruB
Funciton: PTS system, fructose-specific IIA/FPr component
Locus tag: STM2205
Name: fruK
Funciton: 1-phosphofructokinase
Locus tag: STM2204
Name: fruA
Funciton: PTS system, fructose-specific IIBC component
STM2206
fruB
PTS system, fructose-specific IIA/FPr component
STM2205
fruK
1-phosphofructokinase
STM2204
fruA
PTS system, fructose-specific IIBC component
Position: -221
Score: 4.1
Sequence: AAATGTAATGTAGCGCAAAAAG
Position: -202
Score: 4
Sequence: AAGTGCGAGTTGTCTCACAACT
Position: -147
Score: 4.3
Sequence: AGTTATGAAGCGGATCGCATTT
Locus tag: STM4112
Name: frwC
Funciton: hypothetical protein
Locus tag: STM4113
Name: frwB
Funciton: PTS system fructose-like IIB component 1
STM4112
frwC
hypothetical protein
STM4113
frwB
PTS system fructose-like IIB component 1
Position: -100
Score: 3.8
Sequence: AATTGAGACTTCCTTCAAACAC
Locus tag: STM0493
Name: fsr
Funciton: fosmidomycin resistance protein
STM0493
fsr
fosmidomycin resistance protein
Position: -157
Score: 4.8
Sequence: TTAATTGATGTGAATCACAAAA
Locus tag: STM2974
Name: fucA
Funciton: L-fuculose phosphate aldolase
Locus tag: STM2973
Name: fucO
Funciton: L-1,2-propanediol oxidoreductase
STM2974
fucA
L-fuculose phosphate aldolase
STM2973
fucO
L-1,2-propanediol oxidoreductase
Position: -207
Score: 4.7
Sequence: TAAAGTGATGATAATCACAGAA
Position: -167
Score: 4.9
Sequence: AAATGTGACCGCCATCATATTA
Locus tag: STM2975
Name: fucP
Funciton: L-fucose permease
Locus tag: STM2976
Name: fucI
Funciton: L-fucose isomerase
Locus tag: STM2977
Name: fucK
Funciton: L-fuculokinase
Locus tag: STM2978
Name: fucU
Funciton: conserved protein of fucose operon
Locus tag: STM2979
Name: fucR
Funciton: DNA-binding transcriptional activator
STM2975
fucP
L-fucose permease
STM2976
fucI
L-fucose isomerase
STM2977
fucK
L-fuculokinase
STM2978
fucU
conserved protein of fucose operon
STM2979
fucR
DNA-binding transcriptional activator
Position: -203
Score: 4.1
Sequence: TACCGTAATCTGGATCACTTAA
Position: -153
Score: 4.1
Sequence: TTTTGTGAAATAGGTCACCGCT
Locus tag: STM4327
Name: fxsA
Funciton: suppressor of F plamsid exlusion of phage T7
STM4327
fxsA
suppressor of F plamsid exlusion of phage T7
Position: -78
Score: 3.7
Sequence: TAATTTATTACATGTCACACTT
Locus tag: STM0776
Name: galE2
Funciton: UDP-galactose-4-epimerase
Locus tag: STM0775
Name: galT
Funciton: galactose-1-phosphate uridylyltransferase
Locus tag: STM0774
Name: galK
Funciton: galactokinase
Locus tag: STM0773
Name: galM
Funciton: aldose 1-epimerase
STM0776
galE2
UDP-galactose-4-epimerase
STM0775
galT
galactose-1-phosphate uridylyltransferase
STM0774
galK
galactokinase
STM0773
galM
aldose 1-epimerase
Position: -83
Score: 4.6
Sequence: CATTGTGATTAGCCTCACATCT
Locus tag: STM3091
Name: galP
Funciton: sugar transporter
STM3091
galP
sugar transporter
Position: -226
Score: 4.8
Sequence: AATCGTGACTGATGTCACATTA
Locus tag: STM1290
Name: gapA
Funciton: glyceraldehyde-3-phosphate dehydrogenase
Locus tag: STM1289
Name: yeaD
Funciton: Aldose 1-epimerase
STM1290
gapA
glyceraldehyde-3-phosphate dehydrogenase
STM1289
yeaD
Aldose 1-epimerase
Position: -153
Score: 4.3
Sequence: TGCGGTGATCTGGATCACATTC
Locus tag: STM3250
Name: garD
Funciton: D-galactarate dehydratase
STM3250
garD
D-galactarate dehydratase
Position: -116
Score: 3.9
Sequence: TTCTGTGATGAAGATCTATATT
Locus tag: STM2403
Name: glk
Funciton: glucokinase
STM2403
glk
glucokinase
Position: -272
Score: 4.2
Sequence: CTTTGTGATCGCTTTCACGGAG
Position: -114
Score: 3.8
Sequence: CAATGTGAAAGTTGGCACAGAT
Locus tag: STM4007
Name: glnA
Funciton: glutamine synthetase
Locus tag: STM4006
Name: glnL
Funciton: nitrogen regulation protein NR(II)
Locus tag: STM4005
Name: glnG
Funciton: nitrogen regulation protein NR(I)
STM4007
glnA
glutamine synthetase
STM4006
glnL
nitrogen regulation protein NR(II)
STM4005
glnG
nitrogen regulation protein NR(I)
Position: -163
Score: 5
Sequence: TAATGTGAATTACAGCACATAT
Locus tag: STM2284
Name: glpA
Funciton: sn-glycerol-3-phosphate dehydrogenase subunit A
Locus tag: STM2285
Name: glpB
Funciton: Glycerol-3-phosphate dehydrogenase subunit B
Locus tag: STM2286
Name: glpC
Funciton: anaerobic glycerol-3-phosphate dehydrogenase subunit C
STM2284
glpA
sn-glycerol-3-phosphate dehydrogenase subunit A
STM2285
glpB
Glycerol-3-phosphate dehydrogenase subunit B
STM2286
glpC
anaerobic glycerol-3-phosphate dehydrogenase subunit C
Position: -116
Score: 4.4
Sequence: TAATGTTATACATATCACTCTA
Locus tag: STM3526
Name: glpD
Funciton: glycerol-3-phosphate dehydrogenase
STM3526
glpD
glycerol-3-phosphate dehydrogenase
Position: -104
Score: 4.7
Sequence: TAGAGTGATATGTATAACATTA
Locus tag: STM3525
Name: glpE
Funciton: thiosulfate sulfurtransferase
Locus tag: STM3524
Name: glpG
Funciton: predicted intramembrane serine protease
Locus tag: STM3523
Name: glpR2
Funciton: DNA-binding transcriptional repressor
STM3525
glpE
thiosulfate sulfurtransferase
STM3524
glpG
predicted intramembrane serine protease
STM3523
glpR2
DNA-binding transcriptional repressor
Position: -147
Score: 3.9
Sequence: TTTATTGACGCAGTACACACAT
Locus tag: STM4087
Name: glpF
Funciton: facilitator for glycerol uptake
Locus tag: STM4086
Name: glpK
Funciton: glycerol kinase
Locus tag: STM4085
Name: glpX
Funciton: fructose 1,6-bisphosphatase II
STM4087
glpF
facilitator for glycerol uptake
STM4086
glpK
glycerol kinase
STM4085
glpX
fructose 1,6-bisphosphatase II
Position: -220
Score: 3.6
Sequence: ATGTTTGATTTCGCGCATAATC
Position: -180
Score: 4.2
Sequence: AAACGTGATTTCGTGCGCCTTT
Position: -131
Score: 5.2
Sequence: ATATGTGCTGTAATTCACATTA
Locus tag: STM2283
Name: glpT
Funciton: glycerol-3-phosphate transporter
Locus tag: STM2282
Name: glpQ
Funciton: glycerophosphoryl diester phosphodiesterase
STM2283
glpT
glycerol-3-phosphate transporter
STM2282
glpQ
glycerophosphoryl diester phosphodiesterase
Position: -87
Score: 4
Sequence: AAATGTTAACAAACACACATAA
Locus tag: STM0665
Name: glnH2
Funciton: glutamate and aspartate transporter subunit
Locus tag: STM0664
Name: gltJ
Funciton: glutamate/aspartate ABC transporter, permease protein
Locus tag: STM0663
Name: gltK
Funciton: glutamate/aspartate ABC transporter, permease protein
Locus tag: STM0662
Name: gltL
Funciton: ABC transporter-related protein
STM0665
glnH2
glutamate and aspartate transporter subunit
STM0664
gltJ
glutamate/aspartate ABC transporter, permease protein
STM0663
gltK
glutamate/aspartate ABC transporter, permease protein
STM0662
gltL
ABC transporter-related protein
Position: -132
Score: 4.4
Sequence: AACTTTGAAGTAGCTCACACTT
Locus tag: STM3542
Name: gntK
Funciton: gluconate kinase 1
Locus tag: STM3541
Name: gntU
Funciton: Low-affinity gluconate transporter (Gluconate permease)
STM3542
gntK
gluconate kinase 1
STM3541
gntU
Low-affinity gluconate transporter (Gluconate permease)
Position: -288
Score: 3.7
Sequence: ATCTGTGCTACAGCACACTTTT
Locus tag: STM3330
Name: gltB
Funciton: glutamate synthase, large subunit
Locus tag: STM3331
Name: gltD
Funciton: glutamate synthase, small subunit
STM3330
gltB
glutamate synthase, large subunit
STM3331
gltD
glutamate synthase, small subunit
Position: -219
Score: 4.2
Sequence: AAACGTGATCAATTTAACACCT
Locus tag: STM3938
Name: hemC
Funciton: porphobilinogen deaminase
Locus tag: STM3937
Name: hemD
Funciton: uroporphyrinogen-III synthase
Locus tag: STM3936
Name: hemX
Funciton: uroporphyrinogen III methylase
Locus tag: STM3935
Name: hemY
Funciton: HemY protein
STM3938
hemC
porphobilinogen deaminase
STM3937
hemD
uroporphyrinogen-III synthase
STM3936
hemX
uroporphyrinogen III methylase
STM3935
hemY
HemY protein
Position: -229
Score: 4.3
Sequence: AAATGTGACCTGACTCCTAAAT
Position: -163
Score: 3.8
Sequence: TTTTGTGCGGTGCCTCAAGGAA
Locus tag: STM1751
Name: hns
Funciton: global DNA-binding transcriptional dual regulator H-NS
STM1751
hns
global DNA-binding transcriptional dual regulator H-NS
Position: -122
Score: 4.7
Sequence: TATTGTTAATCACATCACAAAT
Locus tag: STM1101
Name: hpaG
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: STM1102
Name: hpaE
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: STM1103
Name: hpaD
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: STM1104
Name: hpaF
Funciton: 4-hydroxyphenylacetate catabolism
STM1101
hpaG
4-hydroxyphenylacetate catabolism
STM1102
hpaE
4-hydroxyphenylacetate catabolism
STM1103
hpaD
4-hydroxyphenylacetate catabolism
STM1104
hpaF
4-hydroxyphenylacetate catabolism
Position: -174
Score: 5.2
Sequence: ATTTGTGATGTGATTAACAATA
Locus tag: STM1100
Name: hpaR
Funciton: 4-hydroxyphenylacetate catabolism
STM1100
hpaR
4-hydroxyphenylacetate catabolism
Position: -147
Score: 5.3
Sequence: ATGTGTGATCGTCATCACAAAA
Locus tag: STM0170
Name: hpt
Funciton: hypoxanthine phosphoribosyltransferase
STM0170
hpt
hypoxanthine phosphoribosyltransferase
Position: -180
Score: 4.3
Sequence: AAACGTGATTGCTGACACAATA
Locus tag: STM0790
Name: hutU
Funciton: urocanate hydratase
Locus tag: STM0791
Name: hutH
Funciton: histidine ammonia-lyase
STM0790
hutU
urocanate hydratase
STM0791
hutH
histidine ammonia-lyase
Position: -81
Score: 4.3
Sequence: CAGCGTGACATAAGTCACAAAT
Locus tag: STM4484
Name: idnD
Funciton: L-idonate 5-dehydrogenase
Locus tag: STM4483
Name: idnO
Funciton: 5-keto-D-gluconate-5-reductase
Locus tag: STM4482
Name: idnT
Funciton: L-idonate and D-gluconate transporter
Locus tag: STM4481
Name: idnR
Funciton: DNA-binding transcriptional repressor, 5-gluconate-binding
STM4484
idnD
L-idonate 5-dehydrogenase
STM4483
idnO
5-keto-D-gluconate-5-reductase
STM4482
idnT
L-idonate and D-gluconate transporter
STM4481
idnR
DNA-binding transcriptional repressor, 5-gluconate-binding
Position: -56
Score: 3.6
Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: STM1377
Name: lpp
Funciton: major outer membrane lipoprotein
STM1377
lpp
major outer membrane lipoprotein
Position: -185
Score: 4
Sequence: AACCGTGATTAACGCCACAAAA
Position: -116
Score: 3.8
Sequence: AAACGTGATCTGGATGAGAGTT
Locus tag: STM4074
Name: lsrA
Funciton: ABC transporter related
Locus tag: STM4075
Name: lsrC
Funciton: putative ABC transport system permease protein
Locus tag: STM4076
Name: lsrD
Funciton: putative ABC transport system permease protein
Locus tag: STM4077
Name: lsrB
Funciton: putative ABC superfamily (peri_perm), sugar transport protein
Locus tag: STM4078
Name: lsrF
Funciton: hypothetical protein
Locus tag: STM4079.S
Name: lsrG
Funciton: autoinducer-2 (AI-2) modifying protein LsrG
STM4074
lsrA
ABC transporter related
STM4075
lsrC
putative ABC transport system permease protein
STM4076
lsrD
putative ABC transport system permease protein
STM4077
lsrB
putative ABC superfamily (peri_perm), sugar transport protein
STM4078
lsrF
hypothetical protein
STM4079.S
lsrG
autoinducer-2 (AI-2) modifying protein LsrG
Position: -97
Score: 4.7
Sequence: AACAGTGATATAGATCACATAG
Locus tag: STM0472
Name: maa
Funciton: maltose O-acetyltransferase
STM0472
maa
maltose O-acetyltransferase
Position: -240
Score: 3.8
Sequence: ATGAGTGTGTTGATTCACACTT
Locus tag: STM2472
Name: maeB
Funciton: malic enzyme
STM2472
maeB
malic enzyme
Position: -192
Score: 4.3
Sequence: TTTCGTGATGCCGCCCGCAAAA
Position: -160
Score: 3.6
Sequence: TTTTGTGTGCGCCAGCACGCAT
Position: -158
Score: 3.8
Sequence: TTGTGTGCGCCAGCACGCATTA
Position: -129
Score: 4.3
Sequence: TTATGCAACACAGATCACATAA
Locus tag: STM4229
Name: malE
Funciton: maltose ABC transporter periplasmic protein
Locus tag: STM4228
Name: malF
Funciton: ABC superfamily (membrane), maltose transport protein
Locus tag: STM4227
Name: malG
Funciton: ABC superfamily (membrane), maltose transport protein
STM4229
malE
maltose ABC transporter periplasmic protein
STM4228
malF
ABC superfamily (membrane), maltose transport protein
STM4227
malG
ABC superfamily (membrane), maltose transport protein
Position: -254
Score: 4.7
Sequence: TTATGTGATCTGTGTTGCATAA
Position: -225
Score: 3.6
Sequence: TAATGCGTGCTGGCGCACACAA
Position: -223
Score: 3.8
Sequence: ATGCGTGCTGGCGCACACAAAA
Locus tag: STM4230
Name: malK
Funciton: maltose/maltodextrin transporter ATP-binding protein
Locus tag: STM4231
Name: lamB
Funciton: maltoporin
Locus tag: STM4232
Name: malM
Funciton: maltose regulon periplasmic protein
STM4230
malK
maltose/maltodextrin transporter ATP-binding protein
STM4231
lamB
maltoporin
STM4232
malM
maltose regulon periplasmic protein
Position: -148
Score: 4.5
Sequence: AAATGTGGTGCTTATCGCAAAT
Locus tag: STM3664
Name: malS
Funciton: periplasmic alpha-amylase precursor
STM3664
malS
periplasmic alpha-amylase precursor
Position: -143
Score: 4.3
Sequence: AATTGTGACAGAGTGCAAATTC
Locus tag: STM3515
Name: malT
Funciton: transcriptional regulator MalT
STM3515
malT
transcriptional regulator MalT
Position: -104
Score: 3.7
Sequence: ATTTTTAAACGAATTTACATAA
Position: -85
Score: 4.7
Sequence: TAATGAGATCGCGATCGCATTT
Locus tag: STM2988
Name: mltA
Funciton: membrane-bound lytic murein transglycosylase A
STM2988
mltA
membrane-bound lytic murein transglycosylase A
Position: -182
Score: 4.4
Sequence: AAGTGTTATTGTGATCGCAAAA
Locus tag: STM2831
Name: mltB
Funciton: membrane-bound lytic murein transglycosylase B
STM2831
mltB
membrane-bound lytic murein transglycosylase B
Position: -205
Score: 3.7
Sequence: AAAATTAATTCGCCTCGCAAAT
Position: -171
Score: 4.7
Sequence: TTTTGTGATTATAATCACTAAA
Locus tag: STM0684
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: STM0683
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: STM0682
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Locus tag: STM0681
Name: nagD
Funciton: Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
STM0684
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
STM0683
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
STM0682
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
STM0681
nagD
Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
Position: -177
Score: 4.8
Sequence: TTTAGTGATTATAATCACAAAA
Locus tag: STM0685
Name: nagE
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
STM0685
nagE
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -113
Score: 4.4
Sequence: TTTAGTGAAGCAGATCGCACTA
Locus tag: STM3339
Name: nanA
Funciton: N-acetylneuraminate lyase (EC 4.1.3.3)
Locus tag: STM3338
Name: nanT
Funciton: Sialic acid transporter (permease) NanT
Locus tag: STM3337
Name: nanE
Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: STM3336
Name: yhcI
Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: STM3335
Name: yhcH
Funciton: Putative sugar isomerase involved in processing of exogenous sialic acid
STM3339
nanA
N-acetylneuraminate lyase (EC 4.1.3.3)
STM3338
nanT
Sialic acid transporter (permease) NanT
STM3337
nanE
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
STM3336
yhcI
N-acetylmannosamine kinase (EC 2.7.1.60)
STM3335
yhcH
Putative sugar isomerase involved in processing of exogenous sialic acid
Position: -154
Score: 4.1
Sequence: AAACTTGATGCACATCAATTTT
Locus tag: STM1211
Name: ndh
Funciton: NADH dehydrogenase (EC 1.6.99.3)
STM1211
ndh
NADH dehydrogenase (EC 1.6.99.3)
Position: -97
Score: 3.7
Sequence: AAACGAGCTATTCATCATATAT
Locus tag: STM0039
Name: nhaA
Funciton: Na+/H+ antiporter NhaA type
STM0039
nhaA
Na+/H+ antiporter NhaA type
Position: -133
Score: 3.7
Sequence: AAGTGTATTACAGATCACTAAT
Position: -84
Score: 3.8
Sequence: TAGTGTGTGTTGGATCTCGTTT
Locus tag: STM2409
Name: nupC
Funciton: Nucleoside permease NupC
STM2409
nupC
Nucleoside permease NupC
Position: -166
Score: 3.9
Sequence: AAGTGTTAACTCCGTCACCCTT
Position: -116
Score: 3.6
Sequence: ATATTTGTCACAGGTAACAAAA
Position: -50
Score: 3.6
Sequence: AAATGTGCCTTTTAAAACATTC
Locus tag: STM3113
Name: nupG
Funciton: Nucleoside permease NupG
STM3113
nupG
Nucleoside permease NupG
Position: -188
Score: 4.3
Sequence: ATGTCTGACGGAGTTCACACTT
Locus tag: STM1070
Name: ompA
Funciton: outer membrane protein A
STM1070
ompA
outer membrane protein A
Position: -245
Score: 4.5
Sequence: AAGTTTGACGTTGTTCACAAAG
Locus tag: STM0999
Name: ompF
Funciton: Outer membrane protein F precursor
STM0999
ompF
Outer membrane protein F precursor
Position: -82
Score: 4.2
Sequence: AAATGTGATCTGTATTAGATCA
Locus tag: STM1732
Name: ompW
Funciton: outer membrane protein W
STM1732
ompW
outer membrane protein W
Position: -268
Score: 4.4
Sequence: AATTGTGATCTATATTTAACAA
Locus tag: STM4561
Name: osmY
Funciton: Osmotically inducible protein OsmY
STM4561
osmY
Osmotically inducible protein OsmY
Position: -241
Score: 4
Sequence: GAATGCGATTACAGTCACATTA
Position: -107
Score: 3.9
Sequence: AATCGTGATTTTGTCCAGATAC
Locus tag: STM3500
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
STM3500
pck
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -73
Score: 3.6
Sequence: AAAAGTGACCTGACGCAATATT
Locus tag: STM1227
Name: pepT
Funciton: peptidase T
STM1227
pepT
peptidase T
Position: -61
Score: 3.7
Sequence: TTCTGTGACTGGCGTTACAATC
Locus tag: STM4221
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
STM4221
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -214
Score: 4.3
Sequence: TTTTGTGATGCATTTAAATAAT
Position: -161
Score: 5.1
Sequence: TAATGTGATGTTTGTCACATCA
Locus tag: STM3472
Name: ppiA
Funciton: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
STM3472
ppiA
Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Position: -155
Score: 4.4
Sequence: AAACGTGATAGCCGTCAAACAA
Locus tag: STM1203
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
STM1203
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -209
Score: 4.4
Sequence: TTTTATGATTTGGTTCAAATCT
Locus tag: STM2431
Name: ptsH
Funciton: PTS system phosphocarrier protein
Locus tag: STM2432
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: STM2433
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
STM2431
ptsH
PTS system phosphocarrier protein
STM2432
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
STM2433
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -204
Score: 3.6
Sequence: AAATGTGAGAGAGTGCAACCTG
Locus tag: STM1125
Name: putP
Funciton: Proline/sodium symporter PutP (TC 2.A.21.2.1)
STM1125
putP
Proline/sodium symporter PutP (TC 2.A.21.2.1)
Position: -201
Score: 4
Sequence: TGTTTTTACTTCACTCACATAA
Locus tag: STM1982
Name: rcsA
Funciton: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
STM1982
rcsA
Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
Position: -247
Score: 3.9
Sequence: AAGGGTTATCGGCCTCACCTTA
Position: -127
Score: 4.1
Sequence: AACTGTGAACGCTATCACGTTC
Locus tag: STM4047
Name: rhaB
Funciton: rhamnulokinase
Locus tag: STM4046
Name: rhaA
Funciton: L-rhamnose isomerase
Locus tag: STM4045
Name: rhaD
Funciton: rhamnulose-1-phosphate aldolase
STM4047
rhaB
rhamnulokinase
STM4046
rhaA
L-rhamnose isomerase
STM4045
rhaD
rhamnulose-1-phosphate aldolase
Position: -182
Score: 4.3
Sequence: GAACGTGATAGCGTTCACAGTT
Position: -147
Score: 4
Sequence: CGGTGTGATGTCGTCCGCATTT
Position: -62
Score: 3.8
Sequence: TAAGGTGAGGCCGATAACCCTT
Locus tag: STM4048
Name: rhaS
Funciton: L-rhamnose operon regulatory protein RhaS
Locus tag: STM4049
Name: rhaR
Funciton: L-rhamnose operon transcriptional activator RhaR
STM4048
rhaS
L-rhamnose operon regulatory protein RhaS
STM4049
rhaR
L-rhamnose operon transcriptional activator RhaR
Position: -293
Score: 3.6
Sequence: TTATGTGACCTCACGCAGCGTT
Position: -149
Score: 3.9
Sequence: AAACGTGAAGTTAATCACTTCA
Locus tag: STM4050
Name: rhaT
Funciton: L-rhamnose-proton symport
STM4050
rhaT
L-rhamnose-proton symport
Position: -141
Score: 3.8
Sequence: GAATGTGAACTAAATCACTTCA
Locus tag: STM0616
Name: rnk
Funciton: Regulator of nucleoside diphosphate kinase
STM0616
rnk
Regulator of nucleoside diphosphate kinase
Position: -176
Score: 4.2
Sequence: ATTTGAGATCGGGATCACTGAT
Locus tag: STM2970
Name: sdaC
Funciton: Serine transporter
Locus tag: STM2971
Name: sdaB
Funciton: L-serine dehydratase 1
STM2970
sdaC
Serine transporter
STM2971
sdaB
L-serine dehydratase 1
Position: -217
Score: 4.5
Sequence: TTTGGTGACATGTATCACGTTT
Locus tag: STM3062
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase
STM3062
serA
D-3-phosphoglycerate dehydrogenase
Position: -213
Score: 4.6
Sequence: TTTTTTGAGGTGAAGCACATTT
Locus tag: STM2207
Name: setB
Funciton: Sugar efflux transporter B
STM2207
setB
Sugar efflux transporter B
Position: -128
Score: 3.7
Sequence: ATTTGTGCGTTCCGCCACAGAT
Locus tag: STM2214
Name: spr
Funciton: predicted peptidase, outer membrane lipoprotein
STM2214
spr
predicted peptidase, outer membrane lipoprotein
Position: -93
Score: 4.3
Sequence: TTTTGCGATCACAATAACACTT
Locus tag: STM2832
Name: srlA
Funciton: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Locus tag: STM2833
Name: srlE
Funciton: PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
Locus tag: STM2834
Name: srlB
Funciton: PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
Locus tag: STM2835
Name: srlD
Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: STM2836
Name: srlM
Funciton: DNA-binding transcriptional activator of glucitol operon
Locus tag: STM2837
Name: srlR
Funciton: Transcriptional repressor for glucitol operon, DeoR family
Locus tag: STM2838.S
Name: srlQ
Funciton: Glucitol operon SrlQ protein
STM2832
srlA
PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
STM2833
srlE
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
STM2834
srlB
PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
STM2835
srlD
Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
STM2836
srlM
DNA-binding transcriptional activator of glucitol operon
STM2837
srlR
Transcriptional repressor for glucitol operon, DeoR family
STM2838.S
srlQ
Glucitol operon SrlQ protein
Position: -127
Score: 3.8
Sequence: GGGTGTTATCTGCCTCACAGTT
Locus tag: STM0149
Name: araT
Funciton: putative permease of the Na+:galactoside symporter family
Locus tag: STM0148
Name: abfA
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
STM0149
araT
putative permease of the Na+:galactoside symporter family
STM0148
abfA
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
Position: -192
Score: 4
Sequence: AGCTGCGATCGTTATCACAAAG
Position: -143
Score: 4.6
Sequence: AATTGTGATAGCGCTATCAAAT
Locus tag: STM2345
Name: CKO_00488
Funciton: LacI-family transcriptional regulator
STM2345
CKO_00488
LacI-family transcriptional regulator
Position: -229
Score: 4.5
Sequence: AACTGTAATACCCATCACACTT
Position: -162
Score: 3.8
Sequence: TGCCGCGATAGATCTCACACTT
Position: -111
Score: 4.1
Sequence: TTCTGTGGCGCAGATCACCTAT
Locus tag: STM4440
Name: CKO_03591
Funciton: hypothetical protein
Locus tag: STM4441
Name: CKO_03590
Funciton: putative cytoplasmic protein
Locus tag: STM4442
Name: CKO_03589
Funciton: putative cytoplasmic protein
Locus tag: STM4443
Name: CKO_03588
Funciton: putative inner membrane protein
Locus tag: STM4444
Name: CKO_03587
Funciton: putative inner membrane protein
Locus tag: STM4445
Name: CKO_03586
Funciton: dihydroorotase
Locus tag: STM4446
Name: CKO_03585
Funciton: hypothetical protein
Locus tag: STM4447
Name: CKO_03584
Funciton: hypothetical protein
STM4440
CKO_03591
hypothetical protein
STM4441
CKO_03590
putative cytoplasmic protein
STM4442
CKO_03589
putative cytoplasmic protein
STM4443
CKO_03588
putative inner membrane protein
STM4444
CKO_03587
putative inner membrane protein
STM4445
CKO_03586
dihydroorotase
STM4446
CKO_03585
hypothetical protein
STM4447
CKO_03584
hypothetical protein
Position: -53
Score: 3.7
Sequence: AAGTGTGAATCAACACACTCAT
Locus tag: STM2473
Name: talA
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: STM2474
Name: tktB
Funciton: Transketolase (EC 2.2.1.1)
STM2473
talA
Transaldolase (EC 2.2.1.2)
STM2474
tktB
Transketolase (EC 2.2.1.1)
Position: -188
Score: 3.9
Sequence: TTTTTTGATTGAAATCAGGCTA
Position: -83
Score: 4.7
Sequence: ATTTGTGAGTGGTCGCACATAA
Locus tag: STM3245
Name: tdcA
Funciton: Threonine catabolic operon transcriptional activator TdcA
Locus tag: STM3244
Name: tdcB
Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: STM3243
Name: tdcC
Funciton: L-threonine/L-serine permease
Locus tag: STM3242
Name: tdcD
Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: STM3241
Name: tdcE
Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: STM3240
Name: tdcG
Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
STM3245
tdcA
Threonine catabolic operon transcriptional activator TdcA
STM3244
tdcB
Threonine dehydratase, catabolic (EC 4.3.1.19)
STM3243
tdcC
L-threonine/L-serine permease
STM3242
tdcD
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
STM3241
tdcE
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
STM3240
tdcG
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
Position: -103
Score: 4.2
Sequence: GAATGTGATCAATTTAAAAATT
Locus tag: STM0001
Name: thrL
Funciton: Thr operon leader peptide
Locus tag: STM0002
Name: thrA
Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: STM0003
Name: thrB
Funciton: Homoserine kinase (EC 2.7.1.39)
Locus tag: STM0004
Name: thrC
Funciton: Threonine synthase (EC 4.2.3.1)
STM0001
thrL
Thr operon leader peptide
STM0002
thrA
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
STM0003
thrB
Homoserine kinase (EC 2.7.1.39)
STM0004
thrC
Threonine synthase (EC 4.2.3.1)
Position: -108
Score: 3.6
Sequence: ATTTGTGATCGTCGCTGCGTTT
Locus tag: STM4454
Name: treB
Funciton: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Locus tag: STM4453
Name: treC
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
STM4454
treB
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
STM4453
treC
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Position: -129
Score: 4
Sequence: ATATGTGAAACAAGACATATTT
Locus tag: STM0413
Name: tsx
Funciton: Nucleoside-specific channel-forming protein Tsx precursor
STM0413
tsx
Nucleoside-specific channel-forming protein Tsx precursor
Position: -144
Score: 5.1
Sequence: TATTGTGATGAACATCACTTTT
Position: -92
Score: 4.1
Sequence: CATAGTGATGGCTGTCACGAAA
Locus tag: STM3968
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
STM3968
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -205
Score: 4.3
Sequence: AAAATTGACACAGATCAAATAA
Position: -155
Score: 4.6
Sequence: ATTTGTGATTTGGTTAGCCAAT
Locus tag: STM3135
Name: uxuA
Funciton: Mannonate dehydratase (EC 4.2.1.8)
Locus tag: STM3136
Name: uxuB
Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
STM3135
uxuA
Mannonate dehydratase (EC 4.2.1.8)
STM3136
uxuB
D-mannonate oxidoreductase (EC 1.1.1.57)
Position: -260
Score: 3.9
Sequence: TTATGCGAAATTCATCACAGCA
Position: -133
Score: 4.4
Sequence: TTTTGAGAGCCAGAGCACATTT
Locus tag: STM3661
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: STM3660
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
STM3661
xylA
Xylose isomerase (EC 5.3.1.5)
STM3660
xylB
Xylulose kinase (EC 2.7.1.17)
Position: -251
Score: 4.8
Sequence: AAATGTGCTCTGGCTCTCAAAA
Position: -124
Score: 4.5
Sequence: TGCTGTGATGAATTTCGCATAA
Locus tag: STM3662
Name: xylR
Funciton: Xylose activator XylR (AraC family)
STM3662
xylR
Xylose activator XylR (AraC family)
Position: -228
Score: 3.6
Sequence: AAATATGAAATATTTATAATAT
Position: -67
Score: 3.8
Sequence: TAGTGTGTTGTCGGCCAAAAAA
Locus tag: STM0178
Name: yadI
Funciton: predicted PTS Enzyme IIA
STM0178
yadI
predicted PTS Enzyme IIA
Position: -82
Score: 4.4
Sequence: CTTTGTGATCTCACTCGCAATC
Locus tag: STM0365
Name: yahN
Funciton: putative transport protein
STM0365
yahN
putative transport protein
Position: -100
Score: 3.9
Sequence: ATGAGTGACATGTGCCACACTT
Locus tag: STM0465
Name: ybaY
Funciton: Glycoprotein-polysaccharide metabolism
STM0465
ybaY
Glycoprotein-polysaccharide metabolism
Position: -93
Score: 4.2
Sequence: AAGTGTGATTTTCGTCCCCATA
Position: -35
Score: 3.9
Sequence: AGTTGTTATTTTTTTTACGTAA
Locus tag: STM0636
Name: ybeD
Funciton: hypothetical protein
Locus tag: STM0635.S
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
STM0636
ybeD
hypothetical protein
STM0635.S
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Position: -56
Score: 4
Sequence: TTTTGTGACGACGACTACACTA
Locus tag: STM0813
Name: ybhP
Funciton: hypothetical protein
Locus tag: STM0812
Name: ybhO
Funciton: Cardiolipin synthetase (EC 2.7.8.-)
Locus tag: STM0811
Name: ybhN
Funciton: hypothetical protein
STM0813
ybhP
hypothetical protein
STM0812
ybhO
Cardiolipin synthetase (EC 2.7.8.-)
STM0811
ybhN
hypothetical protein
Position: -98
Score: 3.8
Sequence: TAGTGTAGTCGTCGTCACAAAA
Locus tag: STM0814
Name: ybhQ
Funciton: putative inner membrane protein
STM0814
ybhQ
putative inner membrane protein
Position: -124
Score: 4.7
Sequence: TTTTGTGATGCGGCGCATAAAT
Locus tag: STM0819
Name: ybiH
Funciton: putative transcriptional regulator
Locus tag: STM0818
Name: ybhG
Funciton: hypothetical protein
Locus tag: STM0817
Name: ybhF
Funciton: ABC transporter-related protein
Locus tag: STM0816
Name: ybhS
Funciton: ABC-2 type transporter
Locus tag: STM0815
Name: ybhR
Funciton: ABC-2 type transporter
STM0819
ybiH
putative transcriptional regulator
STM0818
ybhG
hypothetical protein
STM0817
ybhF
ABC transporter-related protein
STM0816
ybhS
ABC-2 type transporter
STM0815
ybhR
ABC-2 type transporter
Position: -116
Score: 4.4
Sequence: AAACGTGATTTCGTACACATCT
Locus tag: STM0837
Name: ybiS
Funciton: hypothetical protein
STM0837
ybiS
hypothetical protein
Position: -124
Score: 4
Sequence: AGATGTGTACGAAATCACGTTT
Locus tag: STM0838
Name: ybiT
Funciton: ABC transporter ATP-binding protein
STM0838
ybiT
ABC transporter ATP-binding protein
Position: -29
Score: 4.2
Sequence: AAATTTGAACTTCCTCACGGTT
Locus tag: STM0968
Name: ycaD
Funciton: Hypothetical MFS-type transporter protein ycaD
STM0968
ycaD
Hypothetical MFS-type transporter protein ycaD
Position: -120
Score: 4.1
Sequence: TTTTTTGCTGCGTCTTACATTT
Locus tag: STM0983
Name: ycaI
Funciton: hypothetical protein
Locus tag: STM0984
Name: msbA
Funciton: fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component
Locus tag: STM0985
Name: lpxK
Funciton: tetraacyldisaccharide 4'-kinase
STM0983
ycaI
hypothetical protein
STM0984
msbA
fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component
STM0985
lpxK
tetraacyldisaccharide 4'-kinase
Position: -175
Score: 4.7
Sequence: AGATGTGATCTACATCACACGT
Locus tag: STM1213
Name: ycfQ
Funciton: hypothetical protein
STM1213
ycfQ
hypothetical protein
Position: -88
Score: 4.7
Sequence: ACGTGTGATGTAGATCACATCT
Locus tag: STM1214
Name: ycfR
Funciton: hypothetical protein
STM1214
ycfR
hypothetical protein
Position: -243
Score: 4.9
Sequence: TATGGTGACGTGCTTCACATAT
Locus tag: STM1804.S
Name: ycgB
Funciton: hypothetical protein
STM1804.S
ycgB
hypothetical protein
Position: -256
Score: 4.8
Sequence: TTGTGTGATCTAAATCAAGATT
Locus tag: STM1748
Name: ychE
Funciton: putative channel protein
STM1748
ychE
putative channel protein
Position: -105
Score: 4.4
Sequence: ATTTGTGATCGCACCCGCACTT
Locus tag: STM1782
Name: ychH
Funciton: membrane protein
STM1782
ychH
membrane protein
Position: -71
Score: 3.6
Sequence: TTTTGCTATCAGGTTATCAAAA
Locus tag: STM1625
Name: ydcI
Funciton: putative transcriptional regulators, LysR family
STM1625
ydcI
putative transcriptional regulators, LysR family
Position: -95
Score: 4.2
Sequence: AATTGTGCTGTCGTTACCATTT
Locus tag: STM1607
Name: ydcL
Funciton: hypothetical protein
STM1607
ydcL
hypothetical protein
Position: -94
Score: 4.5
Sequence: AAATGAGAAGCAGGTCACAAAA
Locus tag: STM1522
Name: sotB
Funciton: Probable sugar efflux transporter
STM1522
sotB
Probable sugar efflux transporter
Position: -93
Score: 4
Sequence: TTATCTGATTTTACTCCCACTT
Locus tag: STM1484
Name: ydgD
Funciton: hypothetical protein
STM1484
ydgD
hypothetical protein
Position: -91
Score: 3.9
Sequence: ATATAAGAGCCAGCTCACAGTT
Locus tag: STM1320
Name: tcyP
Funciton: L-cystine uptake protein TcyP
STM1320
tcyP
L-cystine uptake protein TcyP
Position: -107
Score: 4.7
Sequence: TAATGTGACATCAGTCACGATT
Locus tag: STM1291
Name: msrB
Funciton: methionine sulfoxide reductase B
Locus tag: STM1292
Name: b1777
Funciton: conserved hypothetical protein
STM1291
msrB
methionine sulfoxide reductase B
STM1292
b1777
conserved hypothetical protein
Position: -42
Score: 4.5
Sequence: AATTGTGACAATTGTCATATTA
Locus tag: STM2119
Name: yegH
Funciton: putative membrane protein
STM2119
yegH
putative membrane protein
Position: -109
Score: 3.9
Sequence: AATATAGATCTTCATCACAGAA
Locus tag: STM2404
Name: yfeO
Funciton: Chloride channel protein
STM2404
yfeO
Chloride channel protein
Position: -37
Score: 3.6
Sequence: AAAATTGATTTATTGCATCTAT
Locus tag: STM2424
Name: yfeR
Funciton: transcriptional regulator, LysR family
STM2424
yfeR
transcriptional regulator, LysR family
Position: -282
Score: 4
Sequence: TTATGTGACTTACTGCAATATT
Locus tag: STM2482
Name: yffB
Funciton: FIG138056: a glutathione-dependent thiol reductase
Locus tag: STM2483
Name: dapE
Funciton: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
STM2482
yffB
FIG138056: a glutathione-dependent thiol reductase
STM2483
dapE
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
Position: -128
Score: 4
Sequence: TGCGGTGAGTTGTTTCACAAAA
Position: -87
Score: 3.6
Sequence: TTTTGTGAAGGCAATCCTCATA
Locus tag: STM2919
Name: ygbI
Funciton: Hypothetical transcriptional regulator ygbI
STM2919
ygbI
Hypothetical transcriptional regulator ygbI
Position: -90
Score: 4
Sequence: TTTTGTGAAACAACTCACCGCA
Locus tag: STM2918
Name: ygbJ
Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Locus tag: STM2917
Name: ygbK
Funciton: hypothetical protein
STM2918
ygbJ
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
STM2917
ygbK
hypothetical protein
Position: -230
Score: 4.5
Sequence: TGTTGTGATACGCGTCAAATAG
Locus tag: STM3239
Name: yhaO
Funciton: hypothetical protein
Locus tag: STM3238
Name: yhaM
Funciton: hypothetical protein
STM3239
yhaO
hypothetical protein
STM3238
yhaM
hypothetical protein
Position: -91
Score: 3.9
Sequence: ATTTGTTACATGAATCATTTAA
Position: -69
Score: 3.6
Sequence: ATGTGTGAAGCGTAGCATTTTA
Locus tag: STM3327
Name: elbB
Funciton: sigma cross-reacting protein 27A (SCRP-27A)
Locus tag: STM3326
Name: mtgA
Funciton: monofunctional biosynthetic peptidoglycan transglycosylase
STM3327
elbB
sigma cross-reacting protein 27A (SCRP-27A)
STM3326
mtgA
monofunctional biosynthetic peptidoglycan transglycosylase
Position: -60
Score: 5
Sequence: TTTTGTGATGAGGGTCACGAAA
Locus tag: STM3361
Name: yhcN
Funciton: hypothetical protein
STM3361
yhcN
hypothetical protein
Position: -166
Score: 5.4
Sequence: AAAAGTGATTTAGATCACATAA
Locus tag: STM3366
Name: yhcR
Funciton: hypothetical protein
Locus tag: STM3365
Name: aaeA
Funciton: p-hydroxybenzoic acid efflux system component
Locus tag: STM3364
Name: aaeB
Funciton: p-hydroxybenzoic acid efflux system component
STM3366
yhcR
hypothetical protein
STM3365
aaeA
p-hydroxybenzoic acid efflux system component
STM3364
aaeB
p-hydroxybenzoic acid efflux system component
Position: -137
Score: 5
Sequence: TGATGTGACAAACATCACATTA
Position: -84
Score: 3.8
Sequence: ATTATTTAAATGCATCACAAAA
Locus tag: STM3473
Name: yhfC
Funciton: Predicted purine nucleoside transporter, MFS superfamily
STM3473
yhfC
Predicted purine nucleoside transporter, MFS superfamily
Position: -154
Score: 4.2
Sequence: TTATGTGAAGCATTTCATAGAC
Locus tag: STM3609
Name: yhjE
Funciton: Inner membrane metabolite transport protein YhjE
STM3609
yhjE
Inner membrane metabolite transport protein YhjE
Position: -187
Score: 4.5
Sequence: AAGTGTGTTGCAGTTCACGATA
Locus tag: STM3668
Name: yiaK
Funciton: 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
Locus tag: STM3669
Name: yiaL
Funciton: Protein YiaL
Locus tag: STM3670
Name: CKO_05035
Funciton: Putative chemotaxis protein, resembles cheA
Locus tag: STM3671
Name: yiaM
Funciton: 2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM
Locus tag: STM3672
Name: yiaN
Funciton: predicted transporter
Locus tag: STM3673
Name: yiaO
Funciton: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
Locus tag: STM3674
Name: lyxK
Funciton: L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
Locus tag: STM3675
Name: sgbH
Funciton: 3-keto-L-gulonate 6-phosphate decarboxylase
Locus tag: STM3676
Name: sgbU
Funciton: putative 3-hexulose-6-phosphate isomerase
Locus tag: STM3677
Name: sgbE
Funciton: L-ribulose-5-phosphate 4-epimerase
STM3668
yiaK
3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
STM3669
yiaL
Protein YiaL
STM3670
CKO_05035
Putative chemotaxis protein, resembles cheA
STM3671
yiaM
2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM
STM3672
yiaN
predicted transporter
STM3673
yiaO
2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
STM3674
lyxK
L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
STM3675
sgbH
3-keto-L-gulonate 6-phosphate decarboxylase
STM3676
sgbU
putative 3-hexulose-6-phosphate isomerase
STM3677
sgbE
L-ribulose-5-phosphate 4-epimerase
Position: -210
Score: 3.7
Sequence: TTAAATTATCTAAGTCAAAATA
Position: -147
Score: 3.8
Sequence: TTTATTGATATTTATAATAAAT
Position: -58
Score: 4.9
Sequence: AATCGTGATACAGCGCACAAAT
Locus tag: STM3738
Name: yicG
Funciton: Putative inner membrane protein
STM3738
yicG
Putative inner membrane protein
Position: -56
Score: 4.1
Sequence: TTTTTTGAGCGGAATCGCGTTA
Locus tag: STM3831
Name: yidA
Funciton: Phosphatase YidA
STM3831
yidA
Phosphatase YidA
Position: -69
Score: 3.6
Sequence: AAAATTGACAGCCGTCACTTTT
Locus tag: STM4024.S
Name: yihV
Funciton: Fructokinase (EC 2.7.1.4); Sugar kinase YihV
Locus tag: STM4025
Name: yihW
Funciton: DeoR-type transcriptional regulator YihW
STM4024.S
yihV
Fructokinase (EC 2.7.1.4); Sugar kinase YihV
STM4025
yihW
DeoR-type transcriptional regulator YihW
Position: -149
Score: 5.7
Sequence: TTTTGTGATATAGTTCACAAAA
Locus tag: STM4263
Name: yjcB
Funciton: hypothetical protein
STM4263
yjcB
hypothetical protein
Position: -98
Score: 3.9
Sequence: AAGTGTAACCCAGTTCTCAAAC
Locus tag: STM4380
Name: yjfP
Funciton: putative hydrolase
STM4380
yjfP
putative hydrolase
Position: -229
Score: 5.4
Sequence: TATCGTGATCTCAATCACATAA
Locus tag: STM4532
Name: cstA2
Funciton: Carbon starvation protein A paralog
Locus tag: STM4531
Name: yjiX
Funciton: hypothetical protein
Locus tag: STM4530
Name: yjiA
Funciton: ATP-binding protein
STM4532
cstA2
Carbon starvation protein A paralog
STM4531
yjiX
hypothetical protein
STM4530
yjiA
ATP-binding protein
Position: -183
Score: 3.7
Sequence: CACTTCGATATACATCACAGTT
Position: -130
Score: 4.8
Sequence: TAATGAGATCTGAATCAAATTA
Locus tag: STM4566
Name: yjjI
Funciton: hypothetical protein
Locus tag: STM4565
Name: yjjW
Funciton: predicted pyruvate formate lyase activating enzyme
STM4566
yjjI
hypothetical protein
STM4565
yjjW
predicted pyruvate formate lyase activating enzyme
Position: -97
Score: 3.6
Sequence: TTCAGTGATATCAGTTAAAATT
Locus tag: STM4600
Name: yjtD
Funciton: RNA methyltransferase, TrmH family, group 1
STM4600
yjtD
RNA methyltransferase, TrmH family, group 1
Position: -65
Score: 3.8
Sequence: AGTATTGAAGTGTTTCACCATA
Locus tag: STM1488
Name: mlc
Funciton: ROK family transcriptional regulatory protein
STM1488
mlc
ROK family transcriptional regulatory protein
Position: -82
Score: 4
Sequence: TATTTTGCCATTGTTCATAAAA
Locus tag: STM2169
Name: yohC
Funciton: hypothetical protein
STM2169
yohC
hypothetical protein
Position: -68
Score: 4.6
Sequence: TGATGTGATCGGTAGCACGTTT
Locus tag: STM2181
Name: yohJ
Funciton: LrgA family protein
Locus tag: STM2182
Name: yohK
Funciton: LrgB family protein
STM2181
yohJ
LrgA family protein
STM2182
yohK
LrgB family protein
Position: -92
Score: 4.5
Sequence: CTTTGTGATAAAACTCACTTTT
Locus tag: STM3019
Name: yqeF
Funciton: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
STM3019
yqeF
Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -222
Score: 4.3
Sequence: TTGTGTGAAGTGATTCACATCC
Locus tag: STM3399
Name: yrdA
Funciton: carbonic anhydrase, family 3
STM3399
yrdA
carbonic anhydrase, family 3
Position: -238
Score: 3.6
Sequence: TTATGTAACGTAATAAAAATTA
Locus tag: STM3495
Name: igaA
Funciton: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
STM3495
igaA
IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Position: -101
Score: 4
Sequence: TTATGTGCGCTACCTCACGCAC
Locus tag: STM2193
Name: folE
Funciton: GTP cyclohydrolase I
Locus tag: STM2192
Name: yeiB
Funciton: conserved inner membrane protein
STM2193
folE
GTP cyclohydrolase I
STM2192
yeiB
conserved inner membrane protein
Position: -242
Score: 4.9
Sequence: AATCTTGATTTAGATCACACAA
Locus tag: STM1749
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
STM1749
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -134
Score: 3.8
Sequence: AAGCACGATATTGCTCACACTA
Locus tag: STM0068
Name: caiF
Funciton: transcriptional activator for carnitine metabolism
STM0068
caiF
transcriptional activator for carnitine metabolism
Position: -201
Score: 3.5
Sequence: ATTTATTATCCCTTTAAAATTG
Position: -168
Score: 4.1
Sequence: TATTATGATATAAGGAACAAAT
Position: -121
Score: 4.9
Sequence: TTTTGTGAATTCTTTCACAGAA
Locus tag: STM2186
Name: yeiT
Funciton: predicted oxidoreductase
Locus tag: STM2187
Name: yeiA
Funciton: putative oxidoreductase
STM2186
yeiT
predicted oxidoreductase
STM2187
yeiA
putative oxidoreductase
Position: -154
Score: 3.5
Sequence: GATAACGATCTGGATCACATTC
Position: -103
Score: 3.5
Sequence: CCCTGTGATGTTTCTCACGCAG
Position: -38
Score: 3.3
Sequence: ATTTGTGAGCATTTTTGAACTC
Locus tag: STM2191
Name: galS
Funciton: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
STM2191
galS
Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Position: -102
Score: 4.1
Sequence: GATTGCGAGGTTGCTCACAAAA
Locus tag: STM2061
Name: sbmC
Funciton: DNA gyrase inhibitor
STM2061
sbmC
DNA gyrase inhibitor
Position: -202
Score: 3.4
Sequence: TTTGGTTACAAGTTTAACACTT
Locus tag: STM1142
Name: csgD
Funciton: DNA-binding transcriptional activator in two-component regulatory system
Locus tag: STM1141
Name: csgE
Funciton: hypothetical protein
Locus tag: STM1140
Name: csgF
Funciton: hypothetical protein
STM1142
csgD
DNA-binding transcriptional activator in two-component regulatory system
STM1141
csgE
hypothetical protein
STM1140
csgF
hypothetical protein
Position: -157
Score: 3.9
Sequence: TTTTGTAAACAGATTAACACTT
Locus tag: STM0158
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
STM0158
acnB
Aconitate hydratase 2 (EC 4.2.1.3)
Position: -89
Score: 3.5
Sequence: TTTCATGAAACGAATCACCCTG
Locus tag: STM0367
Name: prpR
Funciton: Propionate catabolism operon regulatory protein PrpR
STM0367
prpR
Propionate catabolism operon regulatory protein PrpR
Position: -153
Score: 3.5
Sequence: GTTTGTGAGGTTATTAGCGAAA
Locus tag: STM0154
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
STM0154
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -107
Score: 3.6
Sequence: TTTCTTGCTTACCGTCACATTG
Position: -55
Score: 3.6
Sequence: TATTCTGATAAAACGCAAATAC
Locus tag: STM1299
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
STM1299
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -142
Score: 4.2
Sequence: TTGTGTGACGCATGCCGCATTT
Locus tag: STM0977
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: STM0978
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
STM0977
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
STM0978
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -197
Score: 3.5
Sequence: CAGGGTGATTCGTTTCATGAAA
Locus tag: STM0368
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
STM0368
prpB
Methylisocitrate lyase (EC 4.1.3.30)
Position: -161
Score: 3.6
Sequence: AACTCTCATCCAGATCACGTTT
Position: -92
Score: 4
Sequence: TTTTGTGGCGTTAATCACGGTT
Locus tag: STM4073
Name: lsrR
Funciton: LsrR, transcriptional repressor of lsr operon
Locus tag: STM4072
Name: ydeV
Funciton: putative kinase
STM4073
lsrR
LsrR, transcriptional repressor of lsr operon
STM4072
ydeV
putative kinase
Position: -222
Score: 3.3
Sequence: TCGCGTGATAATTTTCATGCTT
Position: -178
Score: 4.2
Sequence: TCATGTGACCCATATCTCCTTA
Position: -117
Score: 4.2
Sequence: TATTGTGATTTTGCGCATTAAA
Locus tag: STM3197
Name: glgS
Funciton: glycogen synthesis protein GlgS
STM3197
glgS
glycogen synthesis protein GlgS
Position: -213
Score: 4
Sequence: AATAGTGACCTCGCGCAAATAG
Locus tag: STM0451
Name: hupB
Funciton: HU, DNA-binding transcriptional regulator, beta subunit
STM0451
hupB
HU, DNA-binding transcriptional regulator, beta subunit
Position: -44
Score: 3.5
Sequence: AATTATGAATAAAAATACATTA
Locus tag: STM4121
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: STM4122
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: STM4123
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
STM4121
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
STM4122
argB
Acetylglutamate kinase (EC 2.7.2.8)
STM4123
argH
Argininosuccinate lyase (EC 4.3.2.1)
Position: -164
Score: 4
Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: STM3939
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
STM3939
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -150
Score: 4.7
Sequence: AAGCGTGATACACCTCACCTTT
Locus tag: STM3787
Name: uhpT
Funciton: Hexose phosphate transport protein UhpT
STM3787
uhpT
Hexose phosphate transport protein UhpT
Position: -76
Score: 3.4
Sequence: GAATTTGATTTACATCAATAAG
Locus tag: STM3474
Name: nirB
Funciton: nitrite reductase (NAD(P)H) subunit
Locus tag: STM3475
Name: nirD
Funciton: nitrite reductase small subunit
STM3474
nirB
nitrite reductase (NAD(P)H) subunit
STM3475
nirD
nitrite reductase small subunit
Position: -188
Score: 3.9
Sequence: TAATGTGATGTCCTCTGCATAC
Locus tag: STM3465
Name: yhfA
Funciton: hypothetical protein
STM3465
yhfA
hypothetical protein
Position: -95
Score: 3.7
Sequence: ATTCGTGATTGCTGTCGTAAAG
Locus tag: STM3680
Name: aldB
Funciton: Aldehyde dehydrogenase B (EC 1.2.1.22)
STM3680
aldB
Aldehyde dehydrogenase B (EC 1.2.1.22)
Position: -64
Score: 4.4
Sequence: TATCGTGAACTGCAACACACTT
Locus tag: STM3667
Name: yiaJ
Funciton: Hypothetical transcriptional regulator yiaJ, IclR family
STM3667
yiaJ
Hypothetical transcriptional regulator yiaJ, IclR family
Position: -184
Score: 3.5
Sequence: ATCCGTGCCGTAGCTCCCACTT
Locus tag: STM3557
Name: ugpB
Funciton: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Locus tag: STM3556
Name: ugpA
Funciton: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
Locus tag: STM3555
Name: ugpE
Funciton: SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)
Locus tag: STM3554
Name: ugpC
Funciton: SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
Locus tag: STM3553
Name: ugpQ
Funciton: Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
STM3557
ugpB
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
STM3556
ugpA
SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
STM3555
ugpE
SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)
STM3554
ugpC
SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
STM3553
ugpQ
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
Position: -236
Score: 4.1
Sequence: TAACATGACCTGTGTCTCATAA
Position: -178
Score: 3.8
Sequence: ATATGTTACCCGTATCATTCTT
Position: -37
Score: 3.2
Sequence: TGACGTTACCCATAACAAAGTA
Locus tag: STM3512
Name: gntT
Funciton: gluconate transporter
STM3512
gntT
gluconate transporter
Position: -157
Score: 4.4
Sequence: ATTTGTGACTTATGTCACGCTG
Position: -107
Score: 3.9
Sequence: TAACGTGATGTGCCTTAGAGTT
Locus tag: STM4485
Name: idnK
Funciton: D-gluconate kinase, thermosensitive
STM4485
idnK
D-gluconate kinase, thermosensitive
Position: -122
Score: 3.9
Sequence: ATTTGCGCGCTACGTCACAGTT
Position: -85
Score: 3.8
Sequence: TGTTGTGATTACTTTTGAAAAT
Locus tag: STM4383.S
Name: ulaA
Funciton: Ascorbate-specific PTS system, EIIC component
Locus tag: STM4384
Name: ulaB
Funciton: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
Locus tag: STM4385
Name: ulaC
Funciton: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
Locus tag: STM4386
Name: ulaD
Funciton: 3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)
Locus tag: STM4387
Name: ulaE
Funciton: L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)
Locus tag: STM4388
Name: ulaF
Funciton: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F)
STM4383.S
ulaA
Ascorbate-specific PTS system, EIIC component
STM4384
ulaB
Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
STM4385
ulaC
Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
STM4386
ulaD
3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)
STM4387
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)
STM4388
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F)
Position: -235
Score: 5.2
Sequence: ATGTGTGAAGTTGATCACATAT
Locus tag: STM4290
Name: proP
Funciton: L-Proline/Glycine betaine transporter ProP
STM4290
proP
L-Proline/Glycine betaine transporter ProP
Position: -53
Score: 3.5
Sequence: GGCTGTGATCCATTTATCAAAA
Locus tag: STM4301
Name: dcuB
Funciton: C4-dicarboxylate transporter DcuB
STM4301
dcuB
C4-dicarboxylate transporter DcuB
Position: -168
Score: 3.3
Sequence: TTAATTTATATTGTTATCAATA
Locus tag: STM4183
Name: aceB
Funciton: malate synthase A
Locus tag: STM4184
Name: aceA
Funciton: isocitrate lyase
STM4183
aceB
malate synthase A
STM4184
aceA
isocitrate lyase
Position: -207
Score: 4.8
Sequence: CTTTGTGATCAATATCACATCA
Position: -163
Score: 5.4
Sequence: TTATGTGACGCAAATCACATAA
Locus tag: STM3685
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: STM3686
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: STM3687
Name: mtlR
Funciton: Mannitol operon repressor
STM3685
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
STM3686
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
STM3687
mtlR
Mannitol operon repressor
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