Regulon of Crp in Salmonella typhimurium LT2
| Regulator type: | Transcription factor |
| TF locus tag: | STM3466 |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 401 |
| - Operons | 207 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -159
Score: 3.1 Sequence: TACATTGACGTACTGCATGTAT
Locus tag: STM3466
Name: crp Funciton: cyclic AMP receptor protein |
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crp
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cyclic AMP receptor protein
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Position: -262
Score: 4.8 Sequence: TTAAGTGACCGAAATCACACTT
Position: -240
Score: 3.9 Sequence: AAAAATGATCTAAAACAAAAAT
Locus tag: STM2391
Name: fadL Funciton: Long-chain fatty acid transport protein |
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fadL
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Long-chain fatty acid transport protein
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Position: -200
Score: 3.9 Sequence: CATTGCGACGGCCTTCAAAAAA
Locus tag: STM3090
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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metK
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S-adenosylmethionine synthetase (EC 2.5.1.6)
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Position: -106
Score: 3.8 Sequence: TTCTGTGACACTCCTCAGCATT
Locus tag: STM2553
Name: csiE Funciton: Stationary phase inducible protein CsiE |
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csiE
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Stationary phase inducible protein CsiE
|
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Position: -270
Score: 3.7 Sequence: TAATCTTATTATCATCAAACAT
Locus tag: STM2924
Name: rpoS Funciton: RNA polymerase sigma factor RpoS |
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rpoS
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RNA polymerase sigma factor RpoS
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Position: -164
Score: 4.2 Sequence: ACATGTGAGCGGGATCAAATTC
Locus tag: STM2511
Name: guaB Funciton: inosine-5'-monophosphate dehydrogenase
Locus tag: STM2510
Name: guaA Funciton: bifunctional GMP synthase/glutamine amidotransferase protein |
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guaB
|
inosine-5'-monophosphate dehydrogenase
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guaA
|
bifunctional GMP synthase/glutamine amidotransferase protein
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Position: -157
Score: 3.5 Sequence: AAACATGATTTCTGTAAAATTG
Position: -120
Score: 3.2 Sequence: TTTACTGATTTCAATCAAAACC
Position: -79
Score: 3 Sequence: CTTATTAAGCTTTCTCACGAAA
Position: -54
Score: 3.4 Sequence: TAATGGGACAGGTTCCAGATAA
Locus tag: STM0151
Name: pdhR Funciton: Transcriptional repressor for pyruvate dehydrogenase complex
Locus tag: STM0152
Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: STM0153
Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
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pdhR
|
Transcriptional repressor for pyruvate dehydrogenase complex
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aceE
|
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
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aceF
|
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
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Position: -37
Score: 5.3 Sequence: TTATGTGATCTAAATCACTTTT
Locus tag: STM3367
Name: aaeR Funciton: LysR-family transcriptional regulator |
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aaeR
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LysR-family transcriptional regulator
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Position: -100
Score: 4.1 Sequence: TTGCGTGATCTGTCGCCCAAAT
Locus tag: STM4275
Name: acs Funciton: acetyl-coenzyme A synthetase
Locus tag: STM4274
Name: yjcH Funciton: membrane protein
Locus tag: STM4273
Name: actP Funciton: acetate permease |
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acs
|
acetyl-coenzyme A synthetase
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yjcH
|
membrane protein
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actP
|
acetate permease
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Position: -220
Score: 3.6 Sequence: AAAGGTGAGCCAGGGCAGATTT
Position: -105
Score: 4 Sequence: AATTGCGATCCAGAGCAATTTT
Locus tag: STM3217
Name: aer Funciton: aerotaxis sensor receptor, senses cellular redox state or proton motive force |
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aer
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aerotaxis sensor receptor, senses cellular redox state or proton motive force
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Position: -125
Score: 4.3 Sequence: TTTTGTTATCCATCTCTAAAAA
Locus tag: STM3106
Name: ansB Funciton: periplasmic L-asparaginase II |
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ansB
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periplasmic L-asparaginase II
|
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Position: -139
Score: 3.7 Sequence: TGTTGTGATCATCCTCTTTTTT
Locus tag: STM4249
Name: aphA Funciton: acid phosphatase/phosphotransferase |
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aphA
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acid phosphatase/phosphotransferase
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Position: -131
Score: 3.8 Sequence: ATATTTGCACAGCGTCACACTT
Locus tag: STM0103
Name: araB Funciton: L-ribulokinase
Locus tag: STM0102
Name: araA Funciton: L-arabinose isomerase
Locus tag: STM0101
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase |
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araB
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L-ribulokinase
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araA
|
L-arabinose isomerase
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araD
|
L-ribulose-5-phosphate 4-epimerase
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Position: -231
Score: 4.5 Sequence: AAGTGTGACGCTGTGCAAATAT
Locus tag: STM0104
Name: araC Funciton: DNA-binding transcriptional dual regulator |
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araC
|
DNA-binding transcriptional dual regulator
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Position: -271
Score: 4 Sequence: TTTTATGATCTCATTAGCATAG
Position: -131
Score: 4.9 Sequence: AAGTGTAATATCCATCACATAT
Locus tag: STM3016
Name: araE Funciton: sugar transporter |
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araE
|
sugar transporter
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Position: -66
Score: 3.9 Sequence: TAATGTATTTTTATTCATAATT
Locus tag: STM4120
Name: argE Funciton: acetylornithine deacetylase |
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argE
|
acetylornithine deacetylase
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Position: -71
Score: 3.9 Sequence: TTTTGTGGTATGGTTTAAACAT
Locus tag: STM2670
Name: aroF Funciton: phospho-2-dehydro-3-deoxyheptonate aldolase
Locus tag: STM2669
Name: tyrA Funciton: T-protein [includes: chorismate mutase and prephenate dehydrogenase] |
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aroF
|
phospho-2-dehydro-3-deoxyheptonate aldolase
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tyrA
|
T-protein [includes: chorismate mutase and prephenate dehydrogenase]
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Position: -106
Score: 4.3 Sequence: AGGTGTGACACGCCTCGCACTT
Position: -64
Score: 4 Sequence: TATCGTGATGCCCATCACTTCC
Locus tag: STM1347
Name: aroH Funciton: phospho-2-dehydro-3-deoxyheptonate aldolase |
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aroH
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phospho-2-dehydro-3-deoxyheptonate aldolase
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Position: -209
Score: 4.2 Sequence: AGCGGTGACCTATTTCACAAAA
Position: -159
Score: 4.2 Sequence: TTAAGTGATCCAGATTACGGTA
Locus tag: STM4326
Name: aspA Funciton: aspartate ammonia-lyase
Locus tag: STM4325
Name: dcuA Funciton: anaerobic C-4-dicarboxylate symporter |
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aspA
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aspartate ammonia-lyase
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dcuA
|
anaerobic C-4-dicarboxylate symporter
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Position: -262
Score: 4.6 Sequence: ATGTGTGATCTGGTGCACGCTT
Position: -211
Score: 4.1 Sequence: TTTTGTACGATCGTTCACACTT
Locus tag: STM3872
Name: atpI Funciton: ATP synthase subunit I
Locus tag: STM3871
Name: atpB Funciton: ATP synthase subunit A
Locus tag: STM3870
Name: atpE Funciton: ATP synthase subunit C
Locus tag: STM3869
Name: atpF Funciton: ATP synthase subunit B
Locus tag: STM3868
Name: atpH Funciton: ATP synthase subunit D
Locus tag: STM3867
Name: atpA Funciton: ATP synthase subunit A
Locus tag: STM3866
Name: atpG Funciton: ATP synthase subunit C
Locus tag: STM3865
Name: atpD Funciton: ATP synthase subunit B
Locus tag: STM3864
Name: atpC Funciton: ATP synthase epsilon subunit |
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atpI
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ATP synthase subunit I
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atpB
|
ATP synthase subunit A
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atpE
|
ATP synthase subunit C
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atpF
|
ATP synthase subunit B
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atpH
|
ATP synthase subunit D
|
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atpA
|
ATP synthase subunit A
|
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atpG
|
ATP synthase subunit C
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atpD
|
ATP synthase subunit B
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atpC
|
ATP synthase epsilon subunit
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Position: -276
Score: 3.7 Sequence: AATTGTTATTTAATTTAACGTT
Locus tag: STM1834
Name: b1821 Funciton: hypothetical protein |
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b1821
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hypothetical protein
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Position: -70
Score: 5.5 Sequence: AAATGTGATTAATATCACATTA
Position: -34
Score: 4.4 Sequence: TCATATGACTTACATCACAAAA
Locus tag: STM1994
Name: b1963 Funciton: orf, hypothetical protein
Locus tag: STM1993
Name: yedJ Funciton: hypothetical protein |
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b1963
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orf, hypothetical protein
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yedJ
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hypothetical protein
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Position: -168
Score: 3.8 Sequence: AAATGTGATGCACCACGATATT
Position: -103
Score: 4.6 Sequence: CTTAGTGATCTACCTCACCTTT
Locus tag: STM2470
Name: b2462 Funciton: putative carboxysome structural protein, ethanol utilization
Locus tag: STM2469
Name: eutP Funciton: putative ethanolamine utilization protein
Locus tag: STM2468
Name: eutQ Funciton: hypothetical protein
Locus tag: STM2467
Name: eutT Funciton: predicted cobalamin adenosyltransferase in ethanolamine utilization
Locus tag: STM2466
Name: eutI Funciton: predicted phosphotransacetylase subunit
Locus tag: STM2465
Name: cchA Funciton: detox protein
Locus tag: STM2464
Name: cchB Funciton: hypothetical protein
Locus tag: STM2463
Name: eutE Funciton: ethanolamine utilization protein
Locus tag: STM2462
Name: eutJ Funciton: ethanolamine utilization protein
Locus tag: STM2461
Name: eutG Funciton: ethanolamine utilization enzyme |
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b2462
|
putative carboxysome structural protein, ethanol utilization
|
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eutP
|
putative ethanolamine utilization protein
|
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eutQ
|
hypothetical protein
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eutT
|
predicted cobalamin adenosyltransferase in ethanolamine utilization
|
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eutI
|
predicted phosphotransacetylase subunit
|
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cchA
|
detox protein
|
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cchB
|
hypothetical protein
|
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eutE
|
ethanolamine utilization protein
|
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eutJ
|
ethanolamine utilization protein
|
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eutG
|
ethanolamine utilization enzyme
|
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Position: -189
Score: 4.4 Sequence: ATTTGCGATAAGCACCACATTT
Locus tag: STM3663
Name: bax Funciton: hypothetical protein |
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bax
|
hypothetical protein
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Position: -167
Score: 4.5 Sequence: AAGTGTGACGAAGATAACAGAA
Locus tag: STM0074
Name: caiT Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: STM0073
Name: caiA Funciton: crotonobetainyl-CoA dehydrogenase
Locus tag: STM0072
Name: caiB Funciton: crotonobetainyl-CoA:carnitine CoA-transferase
Locus tag: STM0071
Name: caiC2 Funciton: crotonobetaine/carnitine-CoA ligase
Locus tag: STM0070
Name: caiD Funciton: carnitinyl-CoA dehydratase
Locus tag: STM0069
Name: caiE Funciton: hypothetical protein |
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caiT
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L-carnitine/gamma-butyrobetaine antiporter
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caiA
|
crotonobetainyl-CoA dehydrogenase
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caiB
|
crotonobetainyl-CoA:carnitine CoA-transferase
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caiC2
|
crotonobetaine/carnitine-CoA ligase
|
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caiD
|
carnitinyl-CoA dehydratase
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caiE
|
hypothetical protein
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Position: -128
Score: 4.2 Sequence: ATTTGCGATACGTCGCGCATTT
Position: -78
Score: 4.8 Sequence: CAATGAGATTTAGATCACATAT
Locus tag: STM2183
Name: cdd Funciton: cytidine deaminase |
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cdd
|
cytidine deaminase
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Position: -250
Score: 3.9 Sequence: TTTTGTGCCTGCCATAACCTTA
Position: -203
Score: 3.9 Sequence: AAATGTGAGGGGGGTCATAACG
Locus tag: STM1312
Name: chbB Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Locus tag: STM1313
Name: chbC Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIC component
Locus tag: STM1314
Name: chbA Funciton: N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
Locus tag: STM1315
Name: chbR Funciton: DNA-binding transcriptional dual regulator
Locus tag: STM1316
Name: chbF Funciton: 6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
Locus tag: STM1317
Name: chbG Funciton: hypothetical protein |
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chbB
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N,N'-diacetylchitobiose-specific PTS system , EIIB component
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chbC
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N,N'-diacetylchitobiose-specific PTS system , EIIC component
|
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chbA
|
N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
|
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chbR
|
DNA-binding transcriptional dual regulator
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chbF
|
6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
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chbG
|
hypothetical protein
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Position: -164
Score: 4 Sequence: AAATTTGAAGCAGTTAACGCTA
Position: -104
Score: 3.6 Sequence: AGATGTTAGTTATCTATCAATT
Locus tag: STM0944
Name: clpS Funciton: ATP-dependent Clp protease adaptor protein
Locus tag: STM0945
Name: clpA Funciton: ATP-dependent CLP protease ATP-binding subunit |
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clpS
|
ATP-dependent Clp protease adaptor protein
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clpA
|
ATP-dependent CLP protease ATP-binding subunit
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Position: -145
Score: 3.7 Sequence: TTCTGTGAACACTCGCAAAAAA
Locus tag: STM4403
Name: cpdB Funciton: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor |
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cpdB
|
2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
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Position: -181
Score: 4 Sequence: TAGCGTTAACTGCTTCAAATTT
Locus tag: STM0943
Name: cspD Funciton: cold shock-like protein |
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cspD
|
cold shock-like protein
|
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Position: -114
Score: 4.3 Sequence: TAACGCGATATTTATCACTTTT
Locus tag: STM0629
Name: cspE Funciton: cold shock protein E |
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cspE
|
cold shock protein E
|
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Position: -193
Score: 5.1 Sequence: TTTTGTGAGCTAATTCGCATTA
Position: -170
Score: 3.9 Sequence: CAAAGTGATATAACACTCATTT
Locus tag: STM4398
Name: cycA2 Funciton: D-alanine/D-serine/glycine permease |
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cycA2
|
D-alanine/D-serine/glycine permease
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Position: -256
Score: 3.7 Sequence: TAAATTGATCGCTGTCGAAAAA
Locus tag: STM0740
Name: cydA Funciton: cytochrome d terminal oxidase, polypeptide subunit I
Locus tag: STM0741
Name: cydB Funciton: cytochrome D ubiquinol oxidase subunit II
Locus tag: STM0742
Name: ybgT Funciton: hypothetical protein
Locus tag: STM0743
Name: ybgE Funciton: hypothetical protein |
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cydA
|
cytochrome d terminal oxidase, polypeptide subunit I
|
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cydB
|
cytochrome D ubiquinol oxidase subunit II
|
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ybgT
|
hypothetical protein
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ybgE
|
hypothetical protein
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Position: -144
Score: 3.9 Sequence: TTTTTTGCGAGTGTTCACAGAA
Locus tag: STM4404
Name: cysQ Funciton: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase |
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cysQ
|
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
|
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Position: -95
Score: 4.8 Sequence: AAATGTGCCTTGTGTCACATTT
Locus tag: STM2062
Name: dacD2 Funciton: D-alanyl-D-alanine carboxypeptidase |
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dacD2
|
D-alanyl-D-alanine carboxypeptidase
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Position: -107
Score: 4.6 Sequence: ATATGTGAAGCACGTCACCATA
Locus tag: STM1803
Name: dadA Funciton: D-amino acid dehydrogenase small subunit
Locus tag: STM1802
Name: dadX Funciton: alanine racemase |
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dadA
|
D-amino acid dehydrogenase small subunit
|
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dadX
|
alanine racemase
|
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Position: -145
Score: 4.1 Sequence: TTGTGCGAGCCAGCTCAAACTT
Locus tag: STM3614
Name: dctA Funciton: C4-dicarboxylate transport protein |
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dctA
|
C4-dicarboxylate transport protein
|
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Position: -154
Score: 3.9 Sequence: CTTTTTGATTGCCATCACCTTC
Position: -99
Score: 4.4 Sequence: TACTTTGAGCCGGTTCACACTT
Locus tag: STM3280.S
Name: deaD Funciton: ATP-independent RNA helicase |
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deaD
|
ATP-independent RNA helicase
|
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Position: -133
Score: 4.9 Sequence: TAATTTGATTCAGATCTCATTA
Position: -80
Score: 4.2 Sequence: AACTGTGATGTATATCGAAGTG
Locus tag: STM4567
Name: deoC Funciton: 2-deoxyribose-5-phosphate aldolase
Locus tag: STM4568
Name: deoA Funciton: thymidine phosphorylase
Locus tag: STM4569
Name: deoB Funciton: phosphopentomutase |
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deoC
|
2-deoxyribose-5-phosphate aldolase
|
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deoA
|
thymidine phosphorylase
|
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deoB
|
phosphopentomutase
|
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Position: -154
Score: 4.2 Sequence: TTTTGTGATCTAAATTGTAGTA
Locus tag: STM3830
Name: dgoR Funciton: GntR domain protein
Locus tag: STM3829
Name: dgoK Funciton: 2-dehydro-3-deoxygalactonokinase
Locus tag: STM3828
Name: dgoA1 Funciton: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
Locus tag: STM3827
Name: dgoT Funciton: D-galactonate transport |
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dgoR
|
GntR domain protein
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dgoK
|
2-dehydro-3-deoxygalactonokinase
|
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dgoA1
|
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
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dgoT
|
D-galactonate transport
|
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Position: -142
Score: 3.8 Sequence: TGATGTAAATTGAATCAACTAT
Position: -124
Score: 4.5 Sequence: CTATGTGATTTCCATCTAATAT
Position: -94
Score: 4.2 Sequence: TTTTGCGATATGGTTCATTTTA
Locus tag: STM3800
Name: dsdC Funciton: DNA-binding transcriptional dual regulator |
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dsdC
|
DNA-binding transcriptional dual regulator
|
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Position: -153
Score: 4 Sequence: TAAAATGAACCATATCGCAAAA
Position: -123
Score: 4.2 Sequence: ATATTAGATGGAAATCACATAG
Locus tag: STM3801
Name: dsdX Funciton: DsdX permease
Locus tag: STM3802
Name: dsdA Funciton: D-serine dehydratase |
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dsdX
|
DsdX permease
|
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dsdA
|
D-serine dehydratase
|
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Position: -213
Score: 5 Sequence: AAATGTGATGCAGGTCAGATAA
Locus tag: STM3070
Name: epd Funciton: D-erythrose 4-phosphate dehydrogenase
Locus tag: STM3069
Name: pgk Funciton: phosphoglycerate kinase |
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epd
|
D-erythrose 4-phosphate dehydrogenase
|
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pgk
|
phosphoglycerate kinase
|
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Position: -131
Score: 3.7 Sequence: AATAGTGACGCGCTTCGCAACC
Locus tag: STM1818
Name: fadD Funciton: long-chain-fatty-acid--CoA ligase
Locus tag: STM1817
Name: rnd Funciton: ribonuclease D |
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fadD
|
long-chain-fatty-acid--CoA ligase
|
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rnd
|
ribonuclease D
|
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Position: -113
Score: 4.3 Sequence: TTTTTTGAATCCCATCACAATC
Locus tag: STM3219
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase) |
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fadH
|
2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
|
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Position: -21
Score: 3.8 Sequence: CTGTGTAATGGAAATCTCACTA
Locus tag: STM1805
Name: fadR Funciton: fatty acid metabolism regulator |
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fadR
|
fatty acid metabolism regulator
|
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Position: -120
Score: 4.4 Sequence: TGATGTGACGTTAATCACTCTA
Locus tag: STM0529
Name: fdrA Funciton: membrane protein FdrA
Locus tag: STM0530
Name: ylbE Funciton: hypothetical protein
Locus tag: STM0531
Name: ylbF Funciton: hypothetical protein
Locus tag: STM0532
Name: ybcF Funciton: carbamate |
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fdrA
|
membrane protein FdrA
|
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ylbE
|
hypothetical protein
|
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|
ylbF
|
hypothetical protein
|
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|
ybcF
|
carbamate
|
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|
Position: -281
Score: 3.8 Sequence: ATTTTTGCTTTATTTATCAATT
Position: -196
Score: 3.7 Sequence: AATATTGAAAATTTTCATATTT
Position: -157
Score: 4 Sequence: ATTGGTGAGGTGCGTAACACTA
Locus tag: STM0075
Name: fixA Funciton: electron transfer flavoprotein, beta subunit
Locus tag: STM0076
Name: fixB Funciton: putative electron transfer flavoprotein, carnitine metabolism
Locus tag: STM0077
Name: fixC Funciton: related to carnitine metabolism
Locus tag: STM0078
Name: fixX Funciton: ferredoxin-like protein
Locus tag: STM0079
Name: yaaU Funciton: putative MFS family transport protein |
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fixA
|
electron transfer flavoprotein, beta subunit
|
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|
fixB
|
putative electron transfer flavoprotein, carnitine metabolism
|
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|
fixC
|
related to carnitine metabolism
|
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|
fixX
|
ferredoxin-like protein
|
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|
yaaU
|
putative MFS family transport protein
|
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|
Position: -285
Score: 5.8 Sequence: ATATGTGATCTGCATCACATAT
Locus tag: STM1925
Name: flhD Funciton: DNA-binding transcriptional dual regulator with FlhC
Locus tag: STM1924.S
Name: flhC Funciton: DNA-binding transcriptional dual regulator with FlhD |
|||
|
flhD
|
DNA-binding transcriptional dual regulator with FlhC
|
||
|
flhC
|
DNA-binding transcriptional dual regulator with FlhD
|
||
|
Position: -78
Score: 4.4 Sequence: AGATATGATCTATATCAAATTC
Locus tag: STM0974
Name: focA Funciton: formate transporter
Locus tag: STM0973
Name: pflB Funciton: formate acetyltransferase |
|||
|
focA
|
formate transporter
|
||
|
pflB
|
formate acetyltransferase
|
||
|
Position: -177
Score: 4.6 Sequence: AAATGTGCTTCACCTCAAAAAA
Locus tag: STM2206
Name: fruB Funciton: PTS system, fructose-specific IIA/FPr component
Locus tag: STM2205
Name: fruK Funciton: 1-phosphofructokinase
Locus tag: STM2204
Name: fruA Funciton: PTS system, fructose-specific IIBC component |
|||
|
fruB
|
PTS system, fructose-specific IIA/FPr component
|
||
|
fruK
|
1-phosphofructokinase
|
||
|
fruA
|
PTS system, fructose-specific IIBC component
|
||
|
Position: -221
Score: 4.1 Sequence: AAATGTAATGTAGCGCAAAAAG
Position: -202
Score: 4 Sequence: AAGTGCGAGTTGTCTCACAACT
Position: -147
Score: 4.3 Sequence: AGTTATGAAGCGGATCGCATTT
Locus tag: STM4112
Name: frwC Funciton: hypothetical protein
Locus tag: STM4113
Name: frwB Funciton: PTS system fructose-like IIB component 1 |
|||
|
frwC
|
hypothetical protein
|
||
|
frwB
|
PTS system fructose-like IIB component 1
|
||
|
Position: -100
Score: 3.8 Sequence: AATTGAGACTTCCTTCAAACAC
Locus tag: STM0493
Name: fsr Funciton: fosmidomycin resistance protein |
|||
|
fsr
|
fosmidomycin resistance protein
|
||
|
Position: -157
Score: 4.8 Sequence: TTAATTGATGTGAATCACAAAA
Locus tag: STM2974
Name: fucA Funciton: L-fuculose phosphate aldolase
Locus tag: STM2973
Name: fucO Funciton: L-1,2-propanediol oxidoreductase |
|||
|
fucA
|
L-fuculose phosphate aldolase
|
||
|
fucO
|
L-1,2-propanediol oxidoreductase
|
||
|
Position: -207
Score: 4.7 Sequence: TAAAGTGATGATAATCACAGAA
Position: -167
Score: 4.9 Sequence: AAATGTGACCGCCATCATATTA
Locus tag: STM2975
Name: fucP Funciton: L-fucose permease
Locus tag: STM2976
Name: fucI Funciton: L-fucose isomerase
Locus tag: STM2977
Name: fucK Funciton: L-fuculokinase
Locus tag: STM2978
Name: fucU Funciton: conserved protein of fucose operon
Locus tag: STM2979
Name: fucR Funciton: DNA-binding transcriptional activator |
|||
|
fucP
|
L-fucose permease
|
||
|
fucI
|
L-fucose isomerase
|
||
|
fucK
|
L-fuculokinase
|
||
|
fucU
|
conserved protein of fucose operon
|
||
|
fucR
|
DNA-binding transcriptional activator
|
||
|
Position: -203
Score: 4.1 Sequence: TACCGTAATCTGGATCACTTAA
Position: -153
Score: 4.1 Sequence: TTTTGTGAAATAGGTCACCGCT
Locus tag: STM4327
Name: fxsA Funciton: suppressor of F plamsid exlusion of phage T7 |
|||
|
fxsA
|
suppressor of F plamsid exlusion of phage T7
|
||
|
Position: -78
Score: 3.7 Sequence: TAATTTATTACATGTCACACTT
Locus tag: STM0776
Name: galE2 Funciton: UDP-galactose-4-epimerase
Locus tag: STM0775
Name: galT Funciton: galactose-1-phosphate uridylyltransferase
Locus tag: STM0774
Name: galK Funciton: galactokinase
Locus tag: STM0773
Name: galM Funciton: aldose 1-epimerase |
|||
|
galE2
|
UDP-galactose-4-epimerase
|
||
|
galT
|
galactose-1-phosphate uridylyltransferase
|
||
|
galK
|
galactokinase
|
||
|
galM
|
aldose 1-epimerase
|
||
|
Position: -83
Score: 4.6 Sequence: CATTGTGATTAGCCTCACATCT
Locus tag: STM3091
Name: galP Funciton: sugar transporter |
|||
|
galP
|
sugar transporter
|
||
|
Position: -226
Score: 4.8 Sequence: AATCGTGACTGATGTCACATTA
Locus tag: STM1290
Name: gapA Funciton: glyceraldehyde-3-phosphate dehydrogenase
Locus tag: STM1289
Name: yeaD Funciton: Aldose 1-epimerase |
|||
|
gapA
|
glyceraldehyde-3-phosphate dehydrogenase
|
||
|
yeaD
|
Aldose 1-epimerase
|
||
|
Position: -153
Score: 4.3 Sequence: TGCGGTGATCTGGATCACATTC
Locus tag: STM3250
Name: garD Funciton: D-galactarate dehydratase |
|||
|
garD
|
D-galactarate dehydratase
|
||
|
Position: -116
Score: 3.9 Sequence: TTCTGTGATGAAGATCTATATT
Locus tag: STM2403
Name: glk Funciton: glucokinase |
|||
|
glk
|
glucokinase
|
||
|
Position: -272
Score: 4.2 Sequence: CTTTGTGATCGCTTTCACGGAG
Position: -114
Score: 3.8 Sequence: CAATGTGAAAGTTGGCACAGAT
Locus tag: STM4007
Name: glnA Funciton: glutamine synthetase
Locus tag: STM4006
Name: glnL Funciton: nitrogen regulation protein NR(II)
Locus tag: STM4005
Name: glnG Funciton: nitrogen regulation protein NR(I) |
|||
|
glnA
|
glutamine synthetase
|
||
|
glnL
|
nitrogen regulation protein NR(II)
|
||
|
glnG
|
nitrogen regulation protein NR(I)
|
||
|
Position: -163
Score: 5 Sequence: TAATGTGAATTACAGCACATAT
Locus tag: STM2284
Name: glpA Funciton: sn-glycerol-3-phosphate dehydrogenase subunit A
Locus tag: STM2285
Name: glpB Funciton: Glycerol-3-phosphate dehydrogenase subunit B
Locus tag: STM2286
Name: glpC Funciton: anaerobic glycerol-3-phosphate dehydrogenase subunit C |
|||
|
glpA
|
sn-glycerol-3-phosphate dehydrogenase subunit A
|
||
|
glpB
|
Glycerol-3-phosphate dehydrogenase subunit B
|
||
|
glpC
|
anaerobic glycerol-3-phosphate dehydrogenase subunit C
|
||
|
Position: -116
Score: 4.4 Sequence: TAATGTTATACATATCACTCTA
Locus tag: STM3526
Name: glpD Funciton: glycerol-3-phosphate dehydrogenase |
|||
|
glpD
|
glycerol-3-phosphate dehydrogenase
|
||
|
Position: -104
Score: 4.7 Sequence: TAGAGTGATATGTATAACATTA
Locus tag: STM3525
Name: glpE Funciton: thiosulfate sulfurtransferase
Locus tag: STM3524
Name: glpG Funciton: predicted intramembrane serine protease
Locus tag: STM3523
Name: glpR2 Funciton: DNA-binding transcriptional repressor |
|||
|
glpE
|
thiosulfate sulfurtransferase
|
||
|
glpG
|
predicted intramembrane serine protease
|
||
|
glpR2
|
DNA-binding transcriptional repressor
|
||
|
Position: -147
Score: 3.9 Sequence: TTTATTGACGCAGTACACACAT
Locus tag: STM4087
Name: glpF Funciton: facilitator for glycerol uptake
Locus tag: STM4086
Name: glpK Funciton: glycerol kinase
Locus tag: STM4085
Name: glpX Funciton: fructose 1,6-bisphosphatase II |
|||
|
glpF
|
facilitator for glycerol uptake
|
||
|
glpK
|
glycerol kinase
|
||
|
glpX
|
fructose 1,6-bisphosphatase II
|
||
|
Position: -220
Score: 3.6 Sequence: ATGTTTGATTTCGCGCATAATC
Position: -180
Score: 4.2 Sequence: AAACGTGATTTCGTGCGCCTTT
Position: -131
Score: 5.2 Sequence: ATATGTGCTGTAATTCACATTA
Locus tag: STM2283
Name: glpT Funciton: glycerol-3-phosphate transporter
Locus tag: STM2282
Name: glpQ Funciton: glycerophosphoryl diester phosphodiesterase |
|||
|
glpT
|
glycerol-3-phosphate transporter
|
||
|
glpQ
|
glycerophosphoryl diester phosphodiesterase
|
||
|
Position: -87
Score: 4 Sequence: AAATGTTAACAAACACACATAA
Locus tag: STM0665
Name: glnH2 Funciton: glutamate and aspartate transporter subunit
Locus tag: STM0664
Name: gltJ Funciton: glutamate/aspartate ABC transporter, permease protein
Locus tag: STM0663
Name: gltK Funciton: glutamate/aspartate ABC transporter, permease protein
Locus tag: STM0662
Name: gltL Funciton: ABC transporter-related protein |
|||
|
glnH2
|
glutamate and aspartate transporter subunit
|
||
|
gltJ
|
glutamate/aspartate ABC transporter, permease protein
|
||
|
gltK
|
glutamate/aspartate ABC transporter, permease protein
|
||
|
gltL
|
ABC transporter-related protein
|
||
|
Position: -132
Score: 4.4 Sequence: AACTTTGAAGTAGCTCACACTT
Locus tag: STM3542
Name: gntK Funciton: gluconate kinase 1
Locus tag: STM3541
Name: gntU Funciton: Low-affinity gluconate transporter (Gluconate permease) |
|||
|
gntK
|
gluconate kinase 1
|
||
|
gntU
|
Low-affinity gluconate transporter (Gluconate permease)
|
||
|
Position: -288
Score: 3.7 Sequence: ATCTGTGCTACAGCACACTTTT
Locus tag: STM3330
Name: gltB Funciton: glutamate synthase, large subunit
Locus tag: STM3331
Name: gltD Funciton: glutamate synthase, small subunit |
|||
|
gltB
|
glutamate synthase, large subunit
|
||
|
gltD
|
glutamate synthase, small subunit
|
||
|
Position: -219
Score: 4.2 Sequence: AAACGTGATCAATTTAACACCT
Locus tag: STM3938
Name: hemC Funciton: porphobilinogen deaminase
Locus tag: STM3937
Name: hemD Funciton: uroporphyrinogen-III synthase
Locus tag: STM3936
Name: hemX Funciton: uroporphyrinogen III methylase
Locus tag: STM3935
Name: hemY Funciton: HemY protein |
|||
|
hemC
|
porphobilinogen deaminase
|
||
|
hemD
|
uroporphyrinogen-III synthase
|
||
|
hemX
|
uroporphyrinogen III methylase
|
||
|
hemY
|
HemY protein
|
||
|
Position: -229
Score: 4.3 Sequence: AAATGTGACCTGACTCCTAAAT
Position: -163
Score: 3.8 Sequence: TTTTGTGCGGTGCCTCAAGGAA
Locus tag: STM1751
Name: hns Funciton: global DNA-binding transcriptional dual regulator H-NS |
|||
|
STM1751
|
hns
|
global DNA-binding transcriptional dual regulator H-NS
|
|
|
Position: -122
Score: 4.7 Sequence: TATTGTTAATCACATCACAAAT
Locus tag: STM1101
Name: hpaG Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: STM1102
Name: hpaE Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: STM1103
Name: hpaD Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: STM1104
Name: hpaF Funciton: 4-hydroxyphenylacetate catabolism |
|||
|
hpaG
|
4-hydroxyphenylacetate catabolism
|
||
|
hpaE
|
4-hydroxyphenylacetate catabolism
|
||
|
hpaD
|
4-hydroxyphenylacetate catabolism
|
||
|
hpaF
|
4-hydroxyphenylacetate catabolism
|
||
|
Position: -174
Score: 5.2 Sequence: ATTTGTGATGTGATTAACAATA
Locus tag: STM1100
Name: hpaR Funciton: 4-hydroxyphenylacetate catabolism |
|||
|
hpaR
|
4-hydroxyphenylacetate catabolism
|
||
|
Position: -147
Score: 5.3 Sequence: ATGTGTGATCGTCATCACAAAA
Locus tag: STM0170
Name: hpt Funciton: hypoxanthine phosphoribosyltransferase |
|||
|
hpt
|
hypoxanthine phosphoribosyltransferase
|
||
|
Position: -180
Score: 4.3 Sequence: AAACGTGATTGCTGACACAATA
Locus tag: STM0790
Name: hutU Funciton: urocanate hydratase
Locus tag: STM0791
Name: hutH Funciton: histidine ammonia-lyase |
|||
|
hutU
|
urocanate hydratase
|
||
|
hutH
|
histidine ammonia-lyase
|
||
|
Position: -81
Score: 4.3 Sequence: CAGCGTGACATAAGTCACAAAT
Locus tag: STM4484
Name: idnD Funciton: L-idonate 5-dehydrogenase
Locus tag: STM4483
Name: idnO Funciton: 5-keto-D-gluconate-5-reductase
Locus tag: STM4482
Name: idnT Funciton: L-idonate and D-gluconate transporter
Locus tag: STM4481
Name: idnR Funciton: DNA-binding transcriptional repressor, 5-gluconate-binding |
|||
|
idnD
|
L-idonate 5-dehydrogenase
|
||
|
idnO
|
5-keto-D-gluconate-5-reductase
|
||
|
idnT
|
L-idonate and D-gluconate transporter
|
||
|
idnR
|
DNA-binding transcriptional repressor, 5-gluconate-binding
|
||
|
Position: -56
Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: STM1377
Name: lpp Funciton: major outer membrane lipoprotein |
|||
|
lpp
|
major outer membrane lipoprotein
|
||
|
Position: -185
Score: 4 Sequence: AACCGTGATTAACGCCACAAAA
Position: -116
Score: 3.8 Sequence: AAACGTGATCTGGATGAGAGTT
Locus tag: STM4074
Name: lsrA Funciton: ABC transporter related
Locus tag: STM4075
Name: lsrC Funciton: putative ABC transport system permease protein
Locus tag: STM4076
Name: lsrD Funciton: putative ABC transport system permease protein
Locus tag: STM4077
Name: lsrB Funciton: putative ABC superfamily (peri_perm), sugar transport protein
Locus tag: STM4078
Name: lsrF Funciton: hypothetical protein
Locus tag: STM4079.S
Name: lsrG Funciton: autoinducer-2 (AI-2) modifying protein LsrG |
|||
|
STM4074
|
lsrA
|
ABC transporter related
|
|
|
STM4075
|
lsrC
|
putative ABC transport system permease protein
|
|
|
STM4076
|
lsrD
|
putative ABC transport system permease protein
|
|
|
STM4077
|
lsrB
|
putative ABC superfamily (peri_perm), sugar transport protein
|
|
|
STM4078
|
lsrF
|
hypothetical protein
|
|
|
STM4079.S
|
lsrG
|
autoinducer-2 (AI-2) modifying protein LsrG
|
|
|
Position: -97
Score: 4.7 Sequence: AACAGTGATATAGATCACATAG
Locus tag: STM0472
Name: maa Funciton: maltose O-acetyltransferase |
|||
|
maa
|
maltose O-acetyltransferase
|
||
|
Position: -240
Score: 3.8 Sequence: ATGAGTGTGTTGATTCACACTT
Locus tag: STM2472
Name: maeB Funciton: malic enzyme |
|||
|
maeB
|
malic enzyme
|
||
|
Position: -192
Score: 4.3 Sequence: TTTCGTGATGCCGCCCGCAAAA
Position: -160
Score: 3.6 Sequence: TTTTGTGTGCGCCAGCACGCAT
Position: -158
Score: 3.8 Sequence: TTGTGTGCGCCAGCACGCATTA
Position: -129
Score: 4.3 Sequence: TTATGCAACACAGATCACATAA
Locus tag: STM4229
Name: malE Funciton: maltose ABC transporter periplasmic protein
Locus tag: STM4228
Name: malF Funciton: ABC superfamily (membrane), maltose transport protein
Locus tag: STM4227
Name: malG Funciton: ABC superfamily (membrane), maltose transport protein |
|||
|
malE
|
maltose ABC transporter periplasmic protein
|
||
|
malF
|
ABC superfamily (membrane), maltose transport protein
|
||
|
malG
|
ABC superfamily (membrane), maltose transport protein
|
||
|
Position: -254
Score: 4.7 Sequence: TTATGTGATCTGTGTTGCATAA
Position: -225
Score: 3.6 Sequence: TAATGCGTGCTGGCGCACACAA
Position: -223
Score: 3.8 Sequence: ATGCGTGCTGGCGCACACAAAA
Locus tag: STM4230
Name: malK Funciton: maltose/maltodextrin transporter ATP-binding protein
Locus tag: STM4231
Name: lamB Funciton: maltoporin
Locus tag: STM4232
Name: malM Funciton: maltose regulon periplasmic protein |
|||
|
malK
|
maltose/maltodextrin transporter ATP-binding protein
|
||
|
lamB
|
maltoporin
|
||
|
malM
|
maltose regulon periplasmic protein
|
||
|
Position: -148
Score: 4.5 Sequence: AAATGTGGTGCTTATCGCAAAT
Locus tag: STM3664
Name: malS Funciton: periplasmic alpha-amylase precursor |
|||
|
malS
|
periplasmic alpha-amylase precursor
|
||
|
Position: -143
Score: 4.3 Sequence: AATTGTGACAGAGTGCAAATTC
Locus tag: STM3515
Name: malT Funciton: transcriptional regulator MalT |
|||
|
malT
|
transcriptional regulator MalT
|
||
|
Position: -104
Score: 3.7 Sequence: ATTTTTAAACGAATTTACATAA
Position: -85
Score: 4.7 Sequence: TAATGAGATCGCGATCGCATTT
Locus tag: STM2988
Name: mltA Funciton: membrane-bound lytic murein transglycosylase A |
|||
|
mltA
|
membrane-bound lytic murein transglycosylase A
|
||
|
Position: -182
Score: 4.4 Sequence: AAGTGTTATTGTGATCGCAAAA
Locus tag: STM2831
Name: mltB Funciton: membrane-bound lytic murein transglycosylase B |
|||
|
mltB
|
membrane-bound lytic murein transglycosylase B
|
||
|
Position: -205
Score: 3.7 Sequence: AAAATTAATTCGCCTCGCAAAT
Position: -171
Score: 4.7 Sequence: TTTTGTGATTATAATCACTAAA
Locus tag: STM0684
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: STM0683
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: STM0682
Name: nagC Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Locus tag: STM0681
Name: nagD Funciton: Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem |
|||
|
nagB
|
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
|
||
|
nagA
|
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
|
||
|
nagC
|
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
|
||
|
nagD
|
Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
|
||
|
Position: -177
Score: 4.8 Sequence: TTTAGTGATTATAATCACAAAA
Locus tag: STM0685
Name: nagE Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
|||
|
nagE
|
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
|
||
|
Position: -113
Score: 4.4 Sequence: TTTAGTGAAGCAGATCGCACTA
Locus tag: STM3339
Name: nanA Funciton: N-acetylneuraminate lyase (EC 4.1.3.3)
Locus tag: STM3338
Name: nanT Funciton: Sialic acid transporter (permease) NanT
Locus tag: STM3337
Name: nanE Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: STM3336
Name: yhcI Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: STM3335
Name: yhcH Funciton: Putative sugar isomerase involved in processing of exogenous sialic acid |
|||
|
nanA
|
N-acetylneuraminate lyase (EC 4.1.3.3)
|
||
|
nanT
|
Sialic acid transporter (permease) NanT
|
||
|
nanE
|
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
|
||
|
yhcI
|
N-acetylmannosamine kinase (EC 2.7.1.60)
|
||
|
yhcH
|
Putative sugar isomerase involved in processing of exogenous sialic acid
|
||
|
Position: -154
Score: 4.1 Sequence: AAACTTGATGCACATCAATTTT
Locus tag: STM1211
Name: ndh Funciton: NADH dehydrogenase (EC 1.6.99.3) |
|||
|
ndh
|
NADH dehydrogenase (EC 1.6.99.3)
|
||
|
Position: -97
Score: 3.7 Sequence: AAACGAGCTATTCATCATATAT
Locus tag: STM0039
Name: nhaA Funciton: Na+/H+ antiporter NhaA type |
|||
|
nhaA
|
Na+/H+ antiporter NhaA type
|
||
|
Position: -133
Score: 3.7 Sequence: AAGTGTATTACAGATCACTAAT
Position: -84
Score: 3.8 Sequence: TAGTGTGTGTTGGATCTCGTTT
Locus tag: STM2409
Name: nupC Funciton: Nucleoside permease NupC |
|||
|
nupC
|
Nucleoside permease NupC
|
||
|
Position: -166
Score: 3.9 Sequence: AAGTGTTAACTCCGTCACCCTT
Position: -116
Score: 3.6 Sequence: ATATTTGTCACAGGTAACAAAA
Position: -50
Score: 3.6 Sequence: AAATGTGCCTTTTAAAACATTC
Locus tag: STM3113
Name: nupG Funciton: Nucleoside permease NupG |
|||
|
nupG
|
Nucleoside permease NupG
|
||
|
Position: -188
Score: 4.3 Sequence: ATGTCTGACGGAGTTCACACTT
Locus tag: STM1070
Name: ompA Funciton: outer membrane protein A |
|||
|
ompA
|
outer membrane protein A
|
||
|
Position: -245
Score: 4.5 Sequence: AAGTTTGACGTTGTTCACAAAG
Locus tag: STM0999
Name: ompF Funciton: Outer membrane protein F precursor |
|||
|
ompF
|
Outer membrane protein F precursor
|
||
|
Position: -82
Score: 4.2 Sequence: AAATGTGATCTGTATTAGATCA
Locus tag: STM1732
Name: ompW Funciton: outer membrane protein W |
|||
|
ompW
|
outer membrane protein W
|
||
|
Position: -268
Score: 4.4 Sequence: AATTGTGATCTATATTTAACAA
Locus tag: STM4561
Name: osmY Funciton: Osmotically inducible protein OsmY |
|||
|
osmY
|
Osmotically inducible protein OsmY
|
||
|
Position: -241
Score: 4 Sequence: GAATGCGATTACAGTCACATTA
Position: -107
Score: 3.9 Sequence: AATCGTGATTTTGTCCAGATAC
Locus tag: STM3500
Name: pck Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
|||
|
pck
|
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
|
||
|
Position: -73
Score: 3.6 Sequence: AAAAGTGACCTGACGCAATATT
Locus tag: STM1227
Name: pepT Funciton: peptidase T |
|||
|
pepT
|
peptidase T
|
||
|
Position: -61
Score: 3.7 Sequence: TTCTGTGACTGGCGTTACAATC
Locus tag: STM4221
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
|||
|
pgi
|
Glucose-6-phosphate isomerase (EC 5.3.1.9)
|
||
|
Position: -214
Score: 4.3 Sequence: TTTTGTGATGCATTTAAATAAT
Position: -161
Score: 5.1 Sequence: TAATGTGATGTTTGTCACATCA
Locus tag: STM3472
Name: ppiA Funciton: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8) |
|||
|
ppiA
|
Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
|
||
|
Position: -155
Score: 4.4 Sequence: AAACGTGATAGCCGTCAAACAA
Locus tag: STM1203
Name: ptsG Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
|||
|
ptsG
|
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
|
||
|
Position: -209
Score: 4.4 Sequence: TTTTATGATTTGGTTCAAATCT
Locus tag: STM2431
Name: ptsH Funciton: PTS system phosphocarrier protein
Locus tag: STM2432
Name: ptsI Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: STM2433
Name: crr Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
|||
|
ptsH
|
PTS system phosphocarrier protein
|
||
|
ptsI
|
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
|
||
|
crr
|
PTS system, glucose-specific IIA component (EC 2.7.1.69)
|
||
|
Position: -204
Score: 3.6 Sequence: AAATGTGAGAGAGTGCAACCTG
Locus tag: STM1125
Name: putP Funciton: Proline/sodium symporter PutP (TC 2.A.21.2.1) |
|||
|
putP
|
Proline/sodium symporter PutP (TC 2.A.21.2.1)
|
||
|
Position: -201
Score: 4 Sequence: TGTTTTTACTTCACTCACATAA
Locus tag: STM1982
Name: rcsA Funciton: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB |
|||
|
rcsA
|
Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
|
||
|
Position: -247
Score: 3.9 Sequence: AAGGGTTATCGGCCTCACCTTA
Position: -127
Score: 4.1 Sequence: AACTGTGAACGCTATCACGTTC
Locus tag: STM4047
Name: rhaB Funciton: rhamnulokinase
Locus tag: STM4046
Name: rhaA Funciton: L-rhamnose isomerase
Locus tag: STM4045
Name: rhaD Funciton: rhamnulose-1-phosphate aldolase |
|||
|
rhaB
|
rhamnulokinase
|
||
|
rhaA
|
L-rhamnose isomerase
|
||
|
rhaD
|
rhamnulose-1-phosphate aldolase
|
||
|
Position: -182
Score: 4.3 Sequence: GAACGTGATAGCGTTCACAGTT
Position: -147
Score: 4 Sequence: CGGTGTGATGTCGTCCGCATTT
Position: -62
Score: 3.8 Sequence: TAAGGTGAGGCCGATAACCCTT
Locus tag: STM4048
Name: rhaS Funciton: L-rhamnose operon regulatory protein RhaS
Locus tag: STM4049
Name: rhaR Funciton: L-rhamnose operon transcriptional activator RhaR |
|||
|
rhaS
|
L-rhamnose operon regulatory protein RhaS
|
||
|
rhaR
|
L-rhamnose operon transcriptional activator RhaR
|
||
|
Position: -293
Score: 3.6 Sequence: TTATGTGACCTCACGCAGCGTT
Position: -149
Score: 3.9 Sequence: AAACGTGAAGTTAATCACTTCA
Locus tag: STM4050
Name: rhaT Funciton: L-rhamnose-proton symport |
|||
|
rhaT
|
L-rhamnose-proton symport
|
||
|
Position: -141
Score: 3.8 Sequence: GAATGTGAACTAAATCACTTCA
Locus tag: STM0616
Name: rnk Funciton: Regulator of nucleoside diphosphate kinase |
|||
|
rnk
|
Regulator of nucleoside diphosphate kinase
|
||
|
Position: -176
Score: 4.2 Sequence: ATTTGAGATCGGGATCACTGAT
Locus tag: STM2970
Name: sdaC Funciton: Serine transporter
Locus tag: STM2971
Name: sdaB Funciton: L-serine dehydratase 1 |
|||
|
sdaC
|
Serine transporter
|
||
|
sdaB
|
L-serine dehydratase 1
|
||
|
Position: -217
Score: 4.5 Sequence: TTTGGTGACATGTATCACGTTT
Locus tag: STM3062
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase |
|||
|
serA
|
D-3-phosphoglycerate dehydrogenase
|
||
|
Position: -213
Score: 4.6 Sequence: TTTTTTGAGGTGAAGCACATTT
Locus tag: STM2207
Name: setB Funciton: Sugar efflux transporter B |
|||
|
setB
|
Sugar efflux transporter B
|
||
|
Position: -128
Score: 3.7 Sequence: ATTTGTGCGTTCCGCCACAGAT
Locus tag: STM2214
Name: spr Funciton: predicted peptidase, outer membrane lipoprotein |
|||
|
spr
|
predicted peptidase, outer membrane lipoprotein
|
||
|
Position: -93
Score: 4.3 Sequence: TTTTGCGATCACAATAACACTT
Locus tag: STM2832
Name: srlA Funciton: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Locus tag: STM2833
Name: srlE Funciton: PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
Locus tag: STM2834
Name: srlB Funciton: PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
Locus tag: STM2835
Name: srlD Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: STM2836
Name: srlM Funciton: DNA-binding transcriptional activator of glucitol operon
Locus tag: STM2837
Name: srlR Funciton: Transcriptional repressor for glucitol operon, DeoR family
Locus tag: STM2838.S
Name: srlQ Funciton: Glucitol operon SrlQ protein |
|||
|
srlA
|
PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
|
||
|
srlE
|
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
|
||
|
srlB
|
PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
|
||
|
srlD
|
Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
|
||
|
srlM
|
DNA-binding transcriptional activator of glucitol operon
|
||
|
srlR
|
Transcriptional repressor for glucitol operon, DeoR family
|
||
|
srlQ
|
Glucitol operon SrlQ protein
|
||
|
Position: -127
Score: 3.8 Sequence: GGGTGTTATCTGCCTCACAGTT
Locus tag: STM0149
Name: araT Funciton: putative permease of the Na+:galactoside symporter family
Locus tag: STM0148
Name: abfA Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55) |
|||
|
araT
|
putative permease of the Na+:galactoside symporter family
|
||
|
abfA
|
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
|
||
|
Position: -192
Score: 4 Sequence: AGCTGCGATCGTTATCACAAAG
Position: -143
Score: 4.6 Sequence: AATTGTGATAGCGCTATCAAAT
Locus tag: STM2345
Name: CKO_00488 Funciton: LacI-family transcriptional regulator |
|||
|
CKO_00488
|
LacI-family transcriptional regulator
|
||
|
Position: -229
Score: 4.5 Sequence: AACTGTAATACCCATCACACTT
Position: -162
Score: 3.8 Sequence: TGCCGCGATAGATCTCACACTT
Position: -111
Score: 4.1 Sequence: TTCTGTGGCGCAGATCACCTAT
Locus tag: STM4440
Name: CKO_03591 Funciton: hypothetical protein
Locus tag: STM4441
Name: CKO_03590 Funciton: putative cytoplasmic protein
Locus tag: STM4442
Name: CKO_03589 Funciton: putative cytoplasmic protein
Locus tag: STM4443
Name: CKO_03588 Funciton: putative inner membrane protein
Locus tag: STM4444
Name: CKO_03587 Funciton: putative inner membrane protein
Locus tag: STM4445
Name: CKO_03586 Funciton: dihydroorotase
Locus tag: STM4446
Name: CKO_03585 Funciton: hypothetical protein
Locus tag: STM4447
Name: CKO_03584 Funciton: hypothetical protein |
|||
|
CKO_03591
|
hypothetical protein
|
||
|
CKO_03590
|
putative cytoplasmic protein
|
||
|
CKO_03589
|
putative cytoplasmic protein
|
||
|
CKO_03588
|
putative inner membrane protein
|
||
|
CKO_03587
|
putative inner membrane protein
|
||
|
CKO_03586
|
dihydroorotase
|
||
|
CKO_03585
|
hypothetical protein
|
||
|
CKO_03584
|
hypothetical protein
|
||
|
Position: -53
Score: 3.7 Sequence: AAGTGTGAATCAACACACTCAT
Locus tag: STM2473
Name: talA Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: STM2474
Name: tktB Funciton: Transketolase (EC 2.2.1.1) |
|||
|
talA
|
Transaldolase (EC 2.2.1.2)
|
||
|
tktB
|
Transketolase (EC 2.2.1.1)
|
||
|
Position: -188
Score: 3.9 Sequence: TTTTTTGATTGAAATCAGGCTA
Position: -83
Score: 4.7 Sequence: ATTTGTGAGTGGTCGCACATAA
Locus tag: STM3245
Name: tdcA Funciton: Threonine catabolic operon transcriptional activator TdcA
Locus tag: STM3244
Name: tdcB Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: STM3243
Name: tdcC Funciton: L-threonine/L-serine permease
Locus tag: STM3242
Name: tdcD Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: STM3241
Name: tdcE Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: STM3240
Name: tdcG Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG |
|||
|
tdcA
|
Threonine catabolic operon transcriptional activator TdcA
|
||
|
tdcB
|
Threonine dehydratase, catabolic (EC 4.3.1.19)
|
||
|
tdcC
|
L-threonine/L-serine permease
|
||
|
tdcD
|
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
|
||
|
tdcE
|
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
|
||
|
tdcG
|
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
|
||
|
Position: -103
Score: 4.2 Sequence: GAATGTGATCAATTTAAAAATT
Locus tag: STM0001
Name: thrL Funciton: Thr operon leader peptide
Locus tag: STM0002
Name: thrA Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: STM0003
Name: thrB Funciton: Homoserine kinase (EC 2.7.1.39)
Locus tag: STM0004
Name: thrC Funciton: Threonine synthase (EC 4.2.3.1) |
|||
|
thrL
|
Thr operon leader peptide
|
||
|
thrA
|
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
|
||
|
thrB
|
Homoserine kinase (EC 2.7.1.39)
|
||
|
thrC
|
Threonine synthase (EC 4.2.3.1)
|
||
|
Position: -108
Score: 3.6 Sequence: ATTTGTGATCGTCGCTGCGTTT
Locus tag: STM4454
Name: treB Funciton: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Locus tag: STM4453
Name: treC Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
|||
|
treB
|
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
|
||
|
treC
|
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
|
||
|
Position: -129
Score: 4 Sequence: ATATGTGAAACAAGACATATTT
Locus tag: STM0413
Name: tsx Funciton: Nucleoside-specific channel-forming protein Tsx precursor |
|||
|
tsx
|
Nucleoside-specific channel-forming protein Tsx precursor
|
||
|
Position: -144
Score: 5.1 Sequence: TATTGTGATGAACATCACTTTT
Position: -92
Score: 4.1 Sequence: CATAGTGATGGCTGTCACGAAA
Locus tag: STM3968
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
|||
|
udp
|
Uridine phosphorylase (EC 2.4.2.3)
|
||
|
Position: -205
Score: 4.3 Sequence: AAAATTGACACAGATCAAATAA
Position: -155
Score: 4.6 Sequence: ATTTGTGATTTGGTTAGCCAAT
Locus tag: STM3135
Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8)
Locus tag: STM3136
Name: uxuB Funciton: D-mannonate oxidoreductase (EC 1.1.1.57) |
|||
|
uxuA
|
Mannonate dehydratase (EC 4.2.1.8)
|
||
|
uxuB
|
D-mannonate oxidoreductase (EC 1.1.1.57)
|
||
|
Position: -260
Score: 3.9 Sequence: TTATGCGAAATTCATCACAGCA
Position: -133
Score: 4.4 Sequence: TTTTGAGAGCCAGAGCACATTT
Locus tag: STM3661
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: STM3660
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
|||
|
xylA
|
Xylose isomerase (EC 5.3.1.5)
|
||
|
xylB
|
Xylulose kinase (EC 2.7.1.17)
|
||
|
Position: -251
Score: 4.8 Sequence: AAATGTGCTCTGGCTCTCAAAA
Position: -124
Score: 4.5 Sequence: TGCTGTGATGAATTTCGCATAA
Locus tag: STM3662
Name: xylR Funciton: Xylose activator XylR (AraC family) |
|||
|
xylR
|
Xylose activator XylR (AraC family)
|
||
|
Position: -228
Score: 3.6 Sequence: AAATATGAAATATTTATAATAT
Position: -67
Score: 3.8 Sequence: TAGTGTGTTGTCGGCCAAAAAA
Locus tag: STM0178
Name: yadI Funciton: predicted PTS Enzyme IIA |
|||
|
STM0178
|
yadI
|
predicted PTS Enzyme IIA
|
|
|
Position: -82
Score: 4.4 Sequence: CTTTGTGATCTCACTCGCAATC
Locus tag: STM0365
Name: yahN Funciton: putative transport protein |
|||
|
STM0365
|
yahN
|
putative transport protein
|
|
|
Position: -100
Score: 3.9 Sequence: ATGAGTGACATGTGCCACACTT
Locus tag: STM0465
Name: ybaY Funciton: Glycoprotein-polysaccharide metabolism |
|||
|
ybaY
|
Glycoprotein-polysaccharide metabolism
|
||
|
Position: -93
Score: 4.2 Sequence: AAGTGTGATTTTCGTCCCCATA
Position: -35
Score: 3.9 Sequence: AGTTGTTATTTTTTTTACGTAA
Locus tag: STM0636
Name: ybeD Funciton: hypothetical protein
Locus tag: STM0635.S
Name: lipB Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase |
|||
|
ybeD
|
hypothetical protein
|
||
|
lipB
|
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
|
||
|
Position: -56
Score: 4 Sequence: TTTTGTGACGACGACTACACTA
Locus tag: STM0813
Name: ybhP Funciton: hypothetical protein
Locus tag: STM0812
Name: ybhO Funciton: Cardiolipin synthetase (EC 2.7.8.-)
Locus tag: STM0811
Name: ybhN Funciton: hypothetical protein |
|||
|
ybhP
|
hypothetical protein
|
||
|
ybhO
|
Cardiolipin synthetase (EC 2.7.8.-)
|
||
|
ybhN
|
hypothetical protein
|
||
|
Position: -98
Score: 3.8 Sequence: TAGTGTAGTCGTCGTCACAAAA
Locus tag: STM0814
Name: ybhQ Funciton: putative inner membrane protein |
|||
|
ybhQ
|
putative inner membrane protein
|
||
|
Position: -124
Score: 4.7 Sequence: TTTTGTGATGCGGCGCATAAAT
Locus tag: STM0819
Name: ybiH Funciton: putative transcriptional regulator
Locus tag: STM0818
Name: ybhG Funciton: hypothetical protein
Locus tag: STM0817
Name: ybhF Funciton: ABC transporter-related protein
Locus tag: STM0816
Name: ybhS Funciton: ABC-2 type transporter
Locus tag: STM0815
Name: ybhR Funciton: ABC-2 type transporter |
|||
|
ybiH
|
putative transcriptional regulator
|
||
|
ybhG
|
hypothetical protein
|
||
|
ybhF
|
ABC transporter-related protein
|
||
|
ybhS
|
ABC-2 type transporter
|
||
|
ybhR
|
ABC-2 type transporter
|
||
|
Position: -116
Score: 4.4 Sequence: AAACGTGATTTCGTACACATCT
Locus tag: STM0837
Name: ybiS Funciton: hypothetical protein |
|||
|
ybiS
|
hypothetical protein
|
||
|
Position: -124
Score: 4 Sequence: AGATGTGTACGAAATCACGTTT
Locus tag: STM0838
Name: ybiT Funciton: ABC transporter ATP-binding protein |
|||
|
ybiT
|
ABC transporter ATP-binding protein
|
||
|
Position: -29
Score: 4.2 Sequence: AAATTTGAACTTCCTCACGGTT
Locus tag: STM0968
Name: ycaD Funciton: Hypothetical MFS-type transporter protein ycaD |
|||
|
ycaD
|
Hypothetical MFS-type transporter protein ycaD
|
||
|
Position: -120
Score: 4.1 Sequence: TTTTTTGCTGCGTCTTACATTT
Locus tag: STM0983
Name: ycaI Funciton: hypothetical protein
Locus tag: STM0984
Name: msbA Funciton: fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component
Locus tag: STM0985
Name: lpxK Funciton: tetraacyldisaccharide 4'-kinase |
|||
|
ycaI
|
hypothetical protein
|
||
|
msbA
|
fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component
|
||
|
lpxK
|
tetraacyldisaccharide 4'-kinase
|
||
|
Position: -175
Score: 4.7 Sequence: AGATGTGATCTACATCACACGT
Locus tag: STM1213
Name: ycfQ Funciton: hypothetical protein |
|||
|
ycfQ
|
hypothetical protein
|
||
|
Position: -88
Score: 4.7 Sequence: ACGTGTGATGTAGATCACATCT
Locus tag: STM1214
Name: ycfR Funciton: hypothetical protein |
|||
|
ycfR
|
hypothetical protein
|
||
|
Position: -243
Score: 4.9 Sequence: TATGGTGACGTGCTTCACATAT
Locus tag: STM1804.S
Name: ycgB Funciton: hypothetical protein |
|||
|
ycgB
|
hypothetical protein
|
||
|
Position: -256
Score: 4.8 Sequence: TTGTGTGATCTAAATCAAGATT
Locus tag: STM1748
Name: ychE Funciton: putative channel protein |
|||
|
ychE
|
putative channel protein
|
||
|
Position: -105
Score: 4.4 Sequence: ATTTGTGATCGCACCCGCACTT
Locus tag: STM1782
Name: ychH Funciton: membrane protein |
|||
|
ychH
|
membrane protein
|
||
|
Position: -71
Score: 3.6 Sequence: TTTTGCTATCAGGTTATCAAAA
Locus tag: STM1625
Name: ydcI Funciton: putative transcriptional regulators, LysR family |
|||
|
ydcI
|
putative transcriptional regulators, LysR family
|
||
|
Position: -95
Score: 4.2 Sequence: AATTGTGCTGTCGTTACCATTT
Locus tag: STM1607
Name: ydcL Funciton: hypothetical protein |
|||
|
STM1607
|
ydcL
|
hypothetical protein
|
|
|
Position: -94
Score: 4.5 Sequence: AAATGAGAAGCAGGTCACAAAA
Locus tag: STM1522
Name: sotB Funciton: Probable sugar efflux transporter |
|||
|
sotB
|
Probable sugar efflux transporter
|
||
|
Position: -93
Score: 4 Sequence: TTATCTGATTTTACTCCCACTT
Locus tag: STM1484
Name: ydgD Funciton: hypothetical protein |
|||
|
ydgD
|
hypothetical protein
|
||
|
Position: -91
Score: 3.9 Sequence: ATATAAGAGCCAGCTCACAGTT
Locus tag: STM1320
Name: tcyP Funciton: L-cystine uptake protein TcyP |
|||
|
tcyP
|
L-cystine uptake protein TcyP
|
||
|
Position: -107
Score: 4.7 Sequence: TAATGTGACATCAGTCACGATT
Locus tag: STM1291
Name: msrB Funciton: methionine sulfoxide reductase B
Locus tag: STM1292
Name: b1777 Funciton: conserved hypothetical protein |
|||
|
msrB
|
methionine sulfoxide reductase B
|
||
|
b1777
|
conserved hypothetical protein
|
||
|
Position: -42
Score: 4.5 Sequence: AATTGTGACAATTGTCATATTA
Locus tag: STM2119
Name: yegH Funciton: putative membrane protein |
|||
|
yegH
|
putative membrane protein
|
||
|
Position: -109
Score: 3.9 Sequence: AATATAGATCTTCATCACAGAA
Locus tag: STM2404
Name: yfeO Funciton: Chloride channel protein |
|||
|
yfeO
|
Chloride channel protein
|
||
|
Position: -37
Score: 3.6 Sequence: AAAATTGATTTATTGCATCTAT
Locus tag: STM2424
Name: yfeR Funciton: transcriptional regulator, LysR family |
|||
|
yfeR
|
transcriptional regulator, LysR family
|
||
|
Position: -282
Score: 4 Sequence: TTATGTGACTTACTGCAATATT
Locus tag: STM2482
Name: yffB Funciton: FIG138056: a glutathione-dependent thiol reductase
Locus tag: STM2483
Name: dapE Funciton: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) |
|||
|
yffB
|
FIG138056: a glutathione-dependent thiol reductase
|
||
|
dapE
|
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
|
||
|
Position: -128
Score: 4 Sequence: TGCGGTGAGTTGTTTCACAAAA
Position: -87
Score: 3.6 Sequence: TTTTGTGAAGGCAATCCTCATA
Locus tag: STM2919
Name: ygbI Funciton: Hypothetical transcriptional regulator ygbI |
|||
|
ygbI
|
Hypothetical transcriptional regulator ygbI
|
||
|
Position: -90
Score: 4 Sequence: TTTTGTGAAACAACTCACCGCA
Locus tag: STM2918
Name: ygbJ Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Locus tag: STM2917
Name: ygbK Funciton: hypothetical protein |
|||
|
ygbJ
|
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
|
||
|
ygbK
|
hypothetical protein
|
||
|
Position: -230
Score: 4.5 Sequence: TGTTGTGATACGCGTCAAATAG
Locus tag: STM3239
Name: yhaO Funciton: hypothetical protein
Locus tag: STM3238
Name: yhaM Funciton: hypothetical protein |
|||
|
yhaO
|
hypothetical protein
|
||
|
yhaM
|
hypothetical protein
|
||
|
Position: -91
Score: 3.9 Sequence: ATTTGTTACATGAATCATTTAA
Position: -69
Score: 3.6 Sequence: ATGTGTGAAGCGTAGCATTTTA
Locus tag: STM3327
Name: elbB Funciton: sigma cross-reacting protein 27A (SCRP-27A)
Locus tag: STM3326
Name: mtgA Funciton: monofunctional biosynthetic peptidoglycan transglycosylase |
|||
|
elbB
|
sigma cross-reacting protein 27A (SCRP-27A)
|
||
|
mtgA
|
monofunctional biosynthetic peptidoglycan transglycosylase
|
||
|
Position: -60
Score: 5 Sequence: TTTTGTGATGAGGGTCACGAAA
Locus tag: STM3361
Name: yhcN Funciton: hypothetical protein |
|||
|
yhcN
|
hypothetical protein
|
||
|
Position: -166
Score: 5.4 Sequence: AAAAGTGATTTAGATCACATAA
Locus tag: STM3366
Name: yhcR Funciton: hypothetical protein
Locus tag: STM3365
Name: aaeA Funciton: p-hydroxybenzoic acid efflux system component
Locus tag: STM3364
Name: aaeB Funciton: p-hydroxybenzoic acid efflux system component |
|||
|
yhcR
|
hypothetical protein
|
||
|
aaeA
|
p-hydroxybenzoic acid efflux system component
|
||
|
aaeB
|
p-hydroxybenzoic acid efflux system component
|
||
|
Position: -137
Score: 5 Sequence: TGATGTGACAAACATCACATTA
Position: -84
Score: 3.8 Sequence: ATTATTTAAATGCATCACAAAA
Locus tag: STM3473
Name: yhfC Funciton: Predicted purine nucleoside transporter, MFS superfamily |
|||
|
yhfC
|
Predicted purine nucleoside transporter, MFS superfamily
|
||
|
Position: -154
Score: 4.2 Sequence: TTATGTGAAGCATTTCATAGAC
Locus tag: STM3609
Name: yhjE Funciton: Inner membrane metabolite transport protein YhjE |
|||
|
yhjE
|
Inner membrane metabolite transport protein YhjE
|
||
|
Position: -187
Score: 4.5 Sequence: AAGTGTGTTGCAGTTCACGATA
Locus tag: STM3668
Name: yiaK Funciton: 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
Locus tag: STM3669
Name: yiaL Funciton: Protein YiaL
Locus tag: STM3670
Name: CKO_05035 Funciton: Putative chemotaxis protein, resembles cheA
Locus tag: STM3671
Name: yiaM Funciton: 2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM
Locus tag: STM3672
Name: yiaN Funciton: predicted transporter
Locus tag: STM3673
Name: yiaO Funciton: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
Locus tag: STM3674
Name: lyxK Funciton: L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
Locus tag: STM3675
Name: sgbH Funciton: 3-keto-L-gulonate 6-phosphate decarboxylase
Locus tag: STM3676
Name: sgbU Funciton: putative 3-hexulose-6-phosphate isomerase
Locus tag: STM3677
Name: sgbE Funciton: L-ribulose-5-phosphate 4-epimerase |
|||
|
yiaK
|
3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
|
||
|
yiaL
|
Protein YiaL
|
||
|
CKO_05035
|
Putative chemotaxis protein, resembles cheA
|
||
|
yiaM
|
2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM
|
||
|
yiaN
|
predicted transporter
|
||
|
yiaO
|
2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
|
||
|
lyxK
|
L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
|
||
|
sgbH
|
3-keto-L-gulonate 6-phosphate decarboxylase
|
||
|
sgbU
|
putative 3-hexulose-6-phosphate isomerase
|
||
|
sgbE
|
L-ribulose-5-phosphate 4-epimerase
|
||
|
Position: -210
Score: 3.7 Sequence: TTAAATTATCTAAGTCAAAATA
Position: -147
Score: 3.8 Sequence: TTTATTGATATTTATAATAAAT
Position: -58
Score: 4.9 Sequence: AATCGTGATACAGCGCACAAAT
Locus tag: STM3738
Name: yicG Funciton: Putative inner membrane protein |
|||
|
yicG
|
Putative inner membrane protein
|
||
|
Position: -56
Score: 4.1 Sequence: TTTTTTGAGCGGAATCGCGTTA
Locus tag: STM3831
Name: yidA Funciton: Phosphatase YidA |
|||
|
yidA
|
Phosphatase YidA
|
||
|
Position: -69
Score: 3.6 Sequence: AAAATTGACAGCCGTCACTTTT
Locus tag: STM4024.S
Name: yihV Funciton: Fructokinase (EC 2.7.1.4); Sugar kinase YihV
Locus tag: STM4025
Name: yihW Funciton: DeoR-type transcriptional regulator YihW |
|||
|
yihV
|
Fructokinase (EC 2.7.1.4); Sugar kinase YihV
|
||
|
yihW
|
DeoR-type transcriptional regulator YihW
|
||
|
Position: -149
Score: 5.7 Sequence: TTTTGTGATATAGTTCACAAAA
Locus tag: STM4263
Name: yjcB Funciton: hypothetical protein |
|||
|
yjcB
|
hypothetical protein
|
||
|
Position: -98
Score: 3.9 Sequence: AAGTGTAACCCAGTTCTCAAAC
Locus tag: STM4380
Name: yjfP Funciton: putative hydrolase |
|||
|
STM4380
|
yjfP
|
putative hydrolase
|
|
|
Position: -229
Score: 5.4 Sequence: TATCGTGATCTCAATCACATAA
Locus tag: STM4532
Name: cstA2 Funciton: Carbon starvation protein A paralog
Locus tag: STM4531
Name: yjiX Funciton: hypothetical protein
Locus tag: STM4530
Name: yjiA Funciton: ATP-binding protein |
|||
|
cstA2
|
Carbon starvation protein A paralog
|
||
|
yjiX
|
hypothetical protein
|
||
|
yjiA
|
ATP-binding protein
|
||
|
Position: -183
Score: 3.7 Sequence: CACTTCGATATACATCACAGTT
Position: -130
Score: 4.8 Sequence: TAATGAGATCTGAATCAAATTA
Locus tag: STM4566
Name: yjjI Funciton: hypothetical protein
Locus tag: STM4565
Name: yjjW Funciton: predicted pyruvate formate lyase activating enzyme |
|||
|
yjjI
|
hypothetical protein
|
||
|
yjjW
|
predicted pyruvate formate lyase activating enzyme
|
||
|
Position: -97
Score: 3.6 Sequence: TTCAGTGATATCAGTTAAAATT
Locus tag: STM4600
Name: yjtD Funciton: RNA methyltransferase, TrmH family, group 1 |
|||
|
yjtD
|
RNA methyltransferase, TrmH family, group 1
|
||
|
Position: -65
Score: 3.8 Sequence: AGTATTGAAGTGTTTCACCATA
Locus tag: STM1488
Name: mlc Funciton: ROK family transcriptional regulatory protein |
|||
|
mlc
|
ROK family transcriptional regulatory protein
|
||
|
Position: -82
Score: 4 Sequence: TATTTTGCCATTGTTCATAAAA
Locus tag: STM2169
Name: yohC Funciton: hypothetical protein |
|||
|
STM2169
|
yohC
|
hypothetical protein
|
|
|
Position: -68
Score: 4.6 Sequence: TGATGTGATCGGTAGCACGTTT
Locus tag: STM2181
Name: yohJ Funciton: LrgA family protein
Locus tag: STM2182
Name: yohK Funciton: LrgB family protein |
|||
|
yohJ
|
LrgA family protein
|
||
|
yohK
|
LrgB family protein
|
||
|
Position: -92
Score: 4.5 Sequence: CTTTGTGATAAAACTCACTTTT
Locus tag: STM3019
Name: yqeF Funciton: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|||
|
yqeF
|
Acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
Position: -222
Score: 4.3 Sequence: TTGTGTGAAGTGATTCACATCC
Locus tag: STM3399
Name: yrdA Funciton: carbonic anhydrase, family 3 |
|||
|
yrdA
|
carbonic anhydrase, family 3
|
||
|
Position: -238
Score: 3.6 Sequence: TTATGTAACGTAATAAAAATTA
Locus tag: STM3495
Name: igaA Funciton: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system |
|||
|
igaA
|
IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
|
||
|
Position: -101
Score: 4 Sequence: TTATGTGCGCTACCTCACGCAC
Locus tag: STM2193
Name: folE Funciton: GTP cyclohydrolase I
Locus tag: STM2192
Name: yeiB Funciton: conserved inner membrane protein |
|||
|
folE
|
GTP cyclohydrolase I
|
||
|
yeiB
|
conserved inner membrane protein
|
||
|
Position: -242
Score: 4.9 Sequence: AATCTTGATTTAGATCACACAA
Locus tag: STM1749
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|||
|
adhE
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
|
||
|
Position: -134
Score: 3.8 Sequence: AAGCACGATATTGCTCACACTA
Locus tag: STM0068
Name: caiF Funciton: transcriptional activator for carnitine metabolism |
|||
|
caiF
|
transcriptional activator for carnitine metabolism
|
||
|
Position: -201
Score: 3.5 Sequence: ATTTATTATCCCTTTAAAATTG
Position: -168
Score: 4.1 Sequence: TATTATGATATAAGGAACAAAT
Position: -121
Score: 4.9 Sequence: TTTTGTGAATTCTTTCACAGAA
Locus tag: STM2186
Name: yeiT Funciton: predicted oxidoreductase
Locus tag: STM2187
Name: yeiA Funciton: putative oxidoreductase |
|||
|
yeiT
|
predicted oxidoreductase
|
||
|
yeiA
|
putative oxidoreductase
|
||
|
Position: -154
Score: 3.5 Sequence: GATAACGATCTGGATCACATTC
Position: -103
Score: 3.5 Sequence: CCCTGTGATGTTTCTCACGCAG
Position: -38
Score: 3.3 Sequence: ATTTGTGAGCATTTTTGAACTC
Locus tag: STM2191
Name: galS Funciton: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator |
|||
|
galS
|
Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
|
||
|
Position: -102
Score: 4.1 Sequence: GATTGCGAGGTTGCTCACAAAA
Locus tag: STM2061
Name: sbmC Funciton: DNA gyrase inhibitor |
|||
|
sbmC
|
DNA gyrase inhibitor
|
||
|
Position: -202
Score: 3.4 Sequence: TTTGGTTACAAGTTTAACACTT
Locus tag: STM1142
Name: csgD Funciton: DNA-binding transcriptional activator in two-component regulatory system
Locus tag: STM1141
Name: csgE Funciton: hypothetical protein
Locus tag: STM1140
Name: csgF Funciton: hypothetical protein |
|||
|
csgD
|
DNA-binding transcriptional activator in two-component regulatory system
|
||
|
csgE
|
hypothetical protein
|
||
|
csgF
|
hypothetical protein
|
||
|
Position: -157
Score: 3.9 Sequence: TTTTGTAAACAGATTAACACTT
Locus tag: STM0158
Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) |
|||
|
acnB
|
Aconitate hydratase 2 (EC 4.2.1.3)
|
||
|
Position: -89
Score: 3.5 Sequence: TTTCATGAAACGAATCACCCTG
Locus tag: STM0367
Name: prpR Funciton: Propionate catabolism operon regulatory protein PrpR |
|||
|
prpR
|
Propionate catabolism operon regulatory protein PrpR
|
||
|
Position: -153
Score: 3.5 Sequence: GTTTGTGAGGTTATTAGCGAAA
Locus tag: STM0154
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
|||
|
lpdA
|
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
|
||
|
Position: -107
Score: 3.6 Sequence: TTTCTTGCTTACCGTCACATTG
Position: -55
Score: 3.6 Sequence: TATTCTGATAAAACGCAAATAC
Locus tag: STM1299
Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|||
|
gdhA
|
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
|
||
|
Position: -142
Score: 4.2 Sequence: TTGTGTGACGCATGCCGCATTT
Locus tag: STM0977
Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: STM0978
Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
|||
|
serC
|
Phosphoserine aminotransferase (EC 2.6.1.52)
|
||
|
aroA
|
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
|
||
|
Position: -197
Score: 3.5 Sequence: CAGGGTGATTCGTTTCATGAAA
Locus tag: STM0368
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30) |
|||
|
prpB
|
Methylisocitrate lyase (EC 4.1.3.30)
|
||
|
Position: -161
Score: 3.6 Sequence: AACTCTCATCCAGATCACGTTT
Position: -92
Score: 4 Sequence: TTTTGTGGCGTTAATCACGGTT
Locus tag: STM4073
Name: lsrR Funciton: LsrR, transcriptional repressor of lsr operon
Locus tag: STM4072
Name: ydeV Funciton: putative kinase |
|||
|
lsrR
|
LsrR, transcriptional repressor of lsr operon
|
||
|
ydeV
|
putative kinase
|
||
|
Position: -222
Score: 3.3 Sequence: TCGCGTGATAATTTTCATGCTT
Position: -178
Score: 4.2 Sequence: TCATGTGACCCATATCTCCTTA
Position: -117
Score: 4.2 Sequence: TATTGTGATTTTGCGCATTAAA
Locus tag: STM3197
Name: glgS Funciton: glycogen synthesis protein GlgS |
|||
|
glgS
|
glycogen synthesis protein GlgS
|
||
|
Position: -213
Score: 4 Sequence: AATAGTGACCTCGCGCAAATAG
Locus tag: STM0451
Name: hupB Funciton: HU, DNA-binding transcriptional regulator, beta subunit |
|||
|
hupB
|
HU, DNA-binding transcriptional regulator, beta subunit
|
||
|
Position: -44
Score: 3.5 Sequence: AATTATGAATAAAAATACATTA
Locus tag: STM4121
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: STM4122
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: STM4123
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) |
|||
|
argC
|
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
|
||
|
argB
|
Acetylglutamate kinase (EC 2.7.2.8)
|
||
|
argH
|
Argininosuccinate lyase (EC 4.3.2.1)
|
||
|
Position: -164
Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: STM3939
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -150
Score: 4.7 Sequence: AAGCGTGATACACCTCACCTTT
Locus tag: STM3787
Name: uhpT Funciton: Hexose phosphate transport protein UhpT |
|||
|
uhpT
|
Hexose phosphate transport protein UhpT
|
||
|
Position: -76
Score: 3.4 Sequence: GAATTTGATTTACATCAATAAG
Locus tag: STM3474
Name: nirB Funciton: nitrite reductase (NAD(P)H) subunit
Locus tag: STM3475
Name: nirD Funciton: nitrite reductase small subunit |
|||
|
nirB
|
nitrite reductase (NAD(P)H) subunit
|
||
|
nirD
|
nitrite reductase small subunit
|
||
|
Position: -188
Score: 3.9 Sequence: TAATGTGATGTCCTCTGCATAC
Locus tag: STM3465
Name: yhfA Funciton: hypothetical protein |
|||
|
yhfA
|
hypothetical protein
|
||
|
Position: -95
Score: 3.7 Sequence: ATTCGTGATTGCTGTCGTAAAG
Locus tag: STM3680
Name: aldB Funciton: Aldehyde dehydrogenase B (EC 1.2.1.22) |
|||
|
aldB
|
Aldehyde dehydrogenase B (EC 1.2.1.22)
|
||
|
Position: -64
Score: 4.4 Sequence: TATCGTGAACTGCAACACACTT
Locus tag: STM3667
Name: yiaJ Funciton: Hypothetical transcriptional regulator yiaJ, IclR family |
|||
|
yiaJ
|
Hypothetical transcriptional regulator yiaJ, IclR family
|
||
|
Position: -184
Score: 3.5 Sequence: ATCCGTGCCGTAGCTCCCACTT
Locus tag: STM3557
Name: ugpB Funciton: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Locus tag: STM3556
Name: ugpA Funciton: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
Locus tag: STM3555
Name: ugpE Funciton: SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)
Locus tag: STM3554
Name: ugpC Funciton: SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
Locus tag: STM3553
Name: ugpQ Funciton: Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) |
|||
|
ugpB
|
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
|
||
|
ugpA
|
SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
|
||
|
ugpE
|
SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)
|
||
|
ugpC
|
SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
|
||
|
ugpQ
|
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
|
||
|
Position: -236
Score: 4.1 Sequence: TAACATGACCTGTGTCTCATAA
Position: -178
Score: 3.8 Sequence: ATATGTTACCCGTATCATTCTT
Position: -37
Score: 3.2 Sequence: TGACGTTACCCATAACAAAGTA
Locus tag: STM3512
Name: gntT Funciton: gluconate transporter |
|||
|
gntT
|
gluconate transporter
|
||
|
Position: -157
Score: 4.4 Sequence: ATTTGTGACTTATGTCACGCTG
Position: -107
Score: 3.9 Sequence: TAACGTGATGTGCCTTAGAGTT
Locus tag: STM4485
Name: idnK Funciton: D-gluconate kinase, thermosensitive |
|||
|
idnK
|
D-gluconate kinase, thermosensitive
|
||
|
Position: -122
Score: 3.9 Sequence: ATTTGCGCGCTACGTCACAGTT
Position: -85
Score: 3.8 Sequence: TGTTGTGATTACTTTTGAAAAT
Locus tag: STM4383.S
Name: ulaA Funciton: Ascorbate-specific PTS system, EIIC component
Locus tag: STM4384
Name: ulaB Funciton: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
Locus tag: STM4385
Name: ulaC Funciton: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
Locus tag: STM4386
Name: ulaD Funciton: 3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)
Locus tag: STM4387
Name: ulaE Funciton: L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)
Locus tag: STM4388
Name: ulaF Funciton: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F) |
|||
|
ulaA
|
Ascorbate-specific PTS system, EIIC component
|
||
|
ulaB
|
Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
|
||
|
ulaC
|
Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
|
||
|
ulaD
|
3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)
|
||
|
ulaE
|
L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)
|
||
|
ulaF
|
L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F)
|
||
|
Position: -235
Score: 5.2 Sequence: ATGTGTGAAGTTGATCACATAT
Locus tag: STM4290
Name: proP Funciton: L-Proline/Glycine betaine transporter ProP |
|||
|
proP
|
L-Proline/Glycine betaine transporter ProP
|
||
|
Position: -53
Score: 3.5 Sequence: GGCTGTGATCCATTTATCAAAA
Locus tag: STM4301
Name: dcuB Funciton: C4-dicarboxylate transporter DcuB |
|||
|
dcuB
|
C4-dicarboxylate transporter DcuB
|
||
|
Position: -168
Score: 3.3 Sequence: TTAATTTATATTGTTATCAATA
Locus tag: STM4183
Name: aceB Funciton: malate synthase A
Locus tag: STM4184
Name: aceA Funciton: isocitrate lyase |
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aceB
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malate synthase A
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aceA
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isocitrate lyase
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Position: -207
Score: 4.8 Sequence: CTTTGTGATCAATATCACATCA
Position: -163
Score: 5.4 Sequence: TTATGTGACGCAAATCACATAA
Locus tag: STM3685
Name: mtlA Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: STM3686
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: STM3687
Name: mtlR Funciton: Mannitol operon repressor |
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mtlA
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PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
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mtlD
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Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
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mtlR
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Mannitol operon repressor
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |