Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Shewanella loihica PV-4

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 24 23
TF AzrR Paraquat Superoxide stress response 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 210 150
TF CueR2 Copper ion, (Cu+) Copper resistance 1 1
TF Dnr Nitric oxide Denitrification 2 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 9 8
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 6
TF Fnr Oxygen Anaerobic metabolism 41 38
TF Fur Iron ion, (Fe2+) Iron homeostasis 23 23
TF GcvA Glycine Glycine metabolism 8 5
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 18 23
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 4
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 11 12
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 5 6
TF LexA DNA damage SOS response 10 12
TF LiuR Branched-chain amino acid degradation 9 7
TF LldR L-lactate Lactate utilization 1 1
TF MalR Maltose Maltodextrin utilization 4 6
TF MetJ S-adenosylmethionine Methionine biosynthesis; Methionine metabolism 13 30
TF MetR Homocysteine Methionine biosynthesis 7 8
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 7 5
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 23 16
TF NhaR Potassium ion Osmotic stress response 2 1
TF NorR Nitric oxide Nitrosative stress response 2 6
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 4 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 6
TF PUR Purine metabolism 5 4
TF PdhR Pyruvate Pyruvate metabolism 11 7
TF PflR Formate Formate metabolism 4 4
TF PhsR Thiosulfate Thiosulfate reduction 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 2 5
TF PsrA Oleate Fatty acid degradation 18 21
TF SO0072 Hypothetical ABC transporter 2 2
TF SO0193 Fatty acid metabolism 1 1
TF SO1393 2 4
TF SO1415 3 3
TF SO1578 Glutathione metabolism 2 4
TF SO1703 Multidrug resistance 2 1
TF SO1758 1 1
TF SO3277 Multidrug resistance 2 4
TF SO3393 Drug resistance 2 4
TF SO4705 2 2
TF SdaR Glycerate Glycerate utilization 1 1
TF SoxR Paraquat Superoxide stress response 3 2
TF TrpR Tryptophan Aromatic amino acid metabolism 2 1
TF TsrR Thiosulfate Thiosulfate reduction 2 4
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 22 16
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 1 1
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