Regulon of NrdR in Shewanella loihica PV-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shew_1186 |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Regulog: | NrdR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -180
Score: 3.7 Sequence: CCTCACTATCTTGTAT
Position: -149
Score: 5 Sequence: ACACCATATCTTGTGT
Locus tag: Shew_1946
Name: nrdA Funciton: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Locus tag: Shew_1945
Name: nrdB Funciton: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Locus tag: Shew_1944
Name: SO2417 Funciton: Ferredoxin |
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nrdA
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
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nrdB
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
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SO2417
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Ferredoxin
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Position: -80
Score: 4.3 Sequence: GCGCTACATATTGTGT
Position: -49
Score: 5.2 Sequence: ACACTATATATGGTGT
Locus tag: Shew_2449
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shew_2448
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |