Regulog NrdR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 5 | 2 |
| Shewanella putrefaciens CN-32 | 5 | 2 |
| Shewanella sp W3-18-1 | 5 | 2 |
| Shewanella sp ANA-3 | 5 | 2 |
| Shewanella sp MR-4 | 5 | 2 |
| Shewanella sp MR-7 | 5 | 2 |
| Shewanella baltica OS155 | 5 | 2 |
| Shewanella denitrificans OS217 | 5 | 2 |
| Shewanella frigidimarina NCIMB 400 | 5 | 2 |
| Shewanella amazonensis SB2B | 5 | 2 |
| Shewanella loihica PV-4 | 5 | 2 |
| Shewanella pealeana ATCC 700345 | 5 | 2 |
| Shewanella halifaxensis HAW-EB4 | 5 | 2 |
| Shewanella piezotolerans WP3 | 5 | 2 |
| Shewanella sediminis HAW-EB3 | 5 | 2 |
| Shewanella woodyi ATCC 51908 | 5 | 2 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| nrdA |
*
Shewanella oneidensis MR-1 Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: SO2415: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella putrefaciens CN-32 Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Sputcn32_2073: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella sp W3-18-1 Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Sputw3181_1939: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella sp ANA-3 Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Shewana3_1969: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella sp MR-4 Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Shewmr4_1916: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella sp MR-7 Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Shewmr7_2062: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella baltica OS155 Site: position = -172 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -203 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Sbal_2059: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella denitrificans OS217 Site: position = -336 score = 3.66418 sequence = ACTCACTATCTTGTAG Site: position = -304 score = 5.35566 sequence = ACACTATATCTTGTGT Gene: Sden_1952: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -254 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -223 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Sfri_2133: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella amazonensis SB2B Site: position = -126 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -95 score = 4.43953 sequence = GCACCATATCTTGTGT Gene: Sama_1728: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella loihica PV-4 Site: position = -149 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -180 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Shew_1946: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella pealeana ATCC 700345 Site: position = -165 score = 5.21242 sequence = ACACCATATATAGTGT Site: position = -163 score = 4.15078 sequence = ACCATATATAGTGTGT Gene: Spea_2064: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -163 score = 4.15078 sequence = ACCATATATAGTGTGT Site: position = -165 score = 5.21242 sequence = ACACCATATATAGTGT Gene: Shal_2036: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella piezotolerans WP3 Site: position = -48 score = 5.11547 sequence = ACACCATATATTGTGT Site: position = -50 score = 3.91098 sequence = AAACACCATATATTGT Gene: swp_2478: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella sediminis HAW-EB3 Site: position = -162 score = 4.15078 sequence = ACCATATATAGTGTGT Site: position = -164 score = 5.21242 sequence = ACACCATATATAGTGT Gene: Ssed_2306: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Shewanella woodyi ATCC 51908 Site: position = -163 score = 4.15078 sequence = ACCATATATAGTGTGT Site: position = -165 score = 5.21242 sequence = ACACCATATATAGTGT Gene: Swoo_2303: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: SO2416: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sputcn32_2074: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sputw3181_1938: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Shewana3_1968: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Shewmr4_1915: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Shewmr7_2063: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sbal_2058: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sden_1953: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sfri_2134: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sama_1727: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Shew_1945: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Spea_2063: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Shal_2035: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: swp_2476: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Ssed_2307: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Swoo_2302: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| SO2417 |
Gene: SO2417: Ferredoxin |
Gene: Sputcn32_2075: Ferredoxin |
Gene: Sputw3181_1937: Ferredoxin |
Gene: Shewana3_1967: Ferredoxin |
Gene: Shewmr4_1914: Ferredoxin |
Gene: Shewmr7_2064: Ferredoxin |
Gene: Sbal_2057: Ferredoxin |
Gene: Sden_1954: Ferredoxin |
Gene: Sfri_2135: Ferredoxin |
Gene: Sama_1726: Ferredoxin |
Gene: Shew_1944: Ferredoxin |
Gene: Spea_2062: Ferredoxin |
Gene: Shal_2034: Ferredoxin |
Gene: swp_2475: Ferredoxin |
Gene: Ssed_2308: Ferredoxin |
Gene: Swoo_2301: Ferredoxin |
Ferredoxin |
| CRON 2. | |||||||||||||||||
| nrdD |
*
Shewanella oneidensis MR-1 Site: position = -79 score = 4.34778 sequence = TGCCTACATATTGTGT Site: position = -48 score = 5.18417 sequence = TCACTATATGTAGTGT Gene: SO2834: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella putrefaciens CN-32 Site: position = -48 score = 5.18417 sequence = TCACTATATGTAGTGT Site: position = -79 score = 4.39855 sequence = ACGCTATATATTGTGC Gene: Sputcn32_1540: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella sp W3-18-1 Site: position = -48 score = 5.18417 sequence = TCACTATATGTAGTGT Site: position = -79 score = 4.39855 sequence = ACGCTATATATTGTGC Gene: Sputw3181_2559: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella sp ANA-3 Site: position = -79 score = 4.28961 sequence = TGCCTAGATATTGTGT Site: position = -48 score = 4.99771 sequence = GCACTATATGTAGTGT Gene: Shewana3_2603: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella sp MR-4 Site: position = -79 score = 4.38656 sequence = TGCCTAGATATAGTGT Site: position = -48 score = 5.51078 sequence = ACACTATATGTAGTGT Gene: Shewmr4_2441: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella sp MR-7 Site: position = -79 score = 4.44473 sequence = TGCCTACATATAGTGT Site: position = -48 score = 5.51078 sequence = ACACTATATGTAGTGT Gene: Shewmr7_2511: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella baltica OS155 Site: position = -80 score = 4.38472 sequence = GCTCTACATATTGTGT Site: position = -49 score = 5.02129 sequence = TCACTAGATGTAGTGT Gene: Sbal_1665: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella denitrificans OS217 Site: position = -124 score = 4.13406 sequence = GCACAGCATATTGTGT Site: position = -93 score = 3.60417 sequence = AgtCTATATgTAGatT Gene: Sden_1419: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -33 score = 3.98243 sequence = GCGCTATATATAGTGC Site: position = -64 score = 4.6859 sequence = ACACTCTATCTTGTGT Gene: Sfri_2443: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella amazonensis SB2B Site: position = -41 score = 4.05811 sequence = GCTCAACATATAGTGA Site: position = -72 score = 4.58685 sequence = ACACTACATTTTGTAT Gene: Sama_1275: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella loihica PV-4 Site: position = -49 score = 5.21242 sequence = ACACTATATATGGTGT Site: position = -80 score = 4.29385 sequence = GCGCTACATATTGTGT Gene: Shew_2449: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella pealeana ATCC 700345 Site: position = -50 score = 5.10242 sequence = GCACTATATATAGTGT Site: position = -81 score = 3.56417 sequence = gCgCcAcATATtGTGa Gene: Spea_2619: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -50 score = 5.10242 sequence = GCACTATATATAGTGT Site: position = -81 score = 4.07724 sequence = ACGCCACATATTGTGA Gene: Shal_2692: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella piezotolerans WP3 Site: position = -80 score = 3.56417 sequence = gCgCcAcATATtGTGa Site: position = -49 score = 5.25456 sequence = ATACTATATGTAGTGT Gene: swp_3165: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella sediminis HAW-EB3 Site: position = -49 score = 5.10772 sequence = ACACTATATGTGGTGT Site: position = -80 score = 4.1969 sequence = ACGCAACATATTGTGC Gene: Ssed_1600: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Shewanella woodyi ATCC 51908 Site: position = -49 score = 5.10772 sequence = ACACTATATGTGGTGT Site: position = -80 score = 4.1969 sequence = ACGCAACATATTGTGC Gene: Swoo_3049: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
Gene: SO2833: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Sputcn32_1541: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Sputw3181_2558: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Shewana3_2602: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Shewmr4_2440: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Shewmr7_2510: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Sbal_1666: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Sden_1420: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Sfri_2442: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Sama_1276: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Shew_2448: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Spea_2618: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Shal_2691: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: swp_3164: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Ssed_1601: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Swoo_3048: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |