Regulog NrdR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 64 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NrdR
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	5	2
Shewanella putrefaciens CN-32	5	2
Shewanella sp W3-18-1	5	2
Shewanella sp ANA-3	5	2
Shewanella sp MR-4	5	2
Shewanella sp MR-7	5	2
Shewanella baltica OS155	5	2
Shewanella denitrificans OS217	5	2
Shewanella frigidimarina NCIMB 400	5	2
Shewanella amazonensis SB2B	5	2
Shewanella loihica PV-4	5	2
Shewanella pealeana ATCC 700345	5	2
Shewanella halifaxensis HAW-EB4	5	2
Shewanella piezotolerans WP3	5	2
Shewanella sediminis HAW-EB3	5	2
Shewanella woodyi ATCC 51908	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
nrdA	* Shewanella oneidensis MR-1 Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: SO2415: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella putrefaciens CN-32 Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Sputcn32_2073: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella sp W3-18-1 Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Sputw3181_1939: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella sp ANA-3 Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Shewana3_1969: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella sp MR-4 Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Shewmr4_1916: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella sp MR-7 Site: position = -202 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -171 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Shewmr7_2062: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella baltica OS155 Site: position = -172 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -203 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Sbal_2059: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella denitrificans OS217 Site: position = -336 score = 3.66418 sequence = ACTCACTATCTTGTAG Site: position = -304 score = 5.35566 sequence = ACACTATATCTTGTGT Gene: Sden_1952: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella frigidimarina NCIMB 400 Site: position = -254 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -223 score = 4.9526 sequence = ACACCATATCTTGTGT Gene: Sfri_2133: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella amazonensis SB2B Site: position = -126 score = 3.66418 sequence = CCTCACTATCTTGTAT Site: position = -95 score = 4.43953 sequence = GCACCATATCTTGTGT Gene: Sama_1728: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella loihica PV-4 Site: position = -149 score = 4.9526 sequence = ACACCATATCTTGTGT Site: position = -180 score = 3.66418 sequence = CCTCACTATCTTGTAT Gene: Shew_1946: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella pealeana ATCC 700345 Site: position = -165 score = 5.21242 sequence = ACACCATATATAGTGT Site: position = -163 score = 4.15078 sequence = ACCATATATAGTGTGT Gene: Spea_2064: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella halifaxensis HAW-EB4 Site: position = -163 score = 4.15078 sequence = ACCATATATAGTGTGT Site: position = -165 score = 5.21242 sequence = ACACCATATATAGTGT Gene: Shal_2036: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella piezotolerans WP3 Site: position = -48 score = 5.11547 sequence = ACACCATATATTGTGT Site: position = -50 score = 3.91098 sequence = AAACACCATATATTGT Gene: swp_2478: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella sediminis HAW-EB3 Site: position = -162 score = 4.15078 sequence = ACCATATATAGTGTGT Site: position = -164 score = 5.21242 sequence = ACACCATATATAGTGT Gene: Ssed_2306: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Shewanella woodyi ATCC 51908 Site: position = -163 score = 4.15078 sequence = ACCATATATAGTGTGT Site: position = -165 score = 5.21242 sequence = ACACCATATATAGTGT Gene: Swoo_2303: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB	Shewanella oneidensis MR-1 Gene: SO2416: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2074: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella sp W3-18-1 Gene: Sputw3181_1938: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella sp ANA-3 Gene: Shewana3_1968: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella sp MR-4 Gene: Shewmr4_1915: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella sp MR-7 Gene: Shewmr7_2063: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella baltica OS155 Gene: Sbal_2058: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella denitrificans OS217 Gene: Sden_1953: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2134: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella amazonensis SB2B Gene: Sama_1727: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella loihica PV-4 Gene: Shew_1945: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella pealeana ATCC 700345 Gene: Spea_2063: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella halifaxensis HAW-EB4 Gene: Shal_2035: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella piezotolerans WP3 Gene: swp_2476: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella sediminis HAW-EB3 Gene: Ssed_2307: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Shewanella woodyi ATCC 51908 Gene: Swoo_2302: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
SO2417	Shewanella oneidensis MR-1 Gene: SO2417: Ferredoxin	Shewanella putrefaciens CN-32 Gene: Sputcn32_2075: Ferredoxin	Shewanella sp W3-18-1 Gene: Sputw3181_1937: Ferredoxin	Shewanella sp ANA-3 Gene: Shewana3_1967: Ferredoxin	Shewanella sp MR-4 Gene: Shewmr4_1914: Ferredoxin	Shewanella sp MR-7 Gene: Shewmr7_2064: Ferredoxin	Shewanella baltica OS155 Gene: Sbal_2057: Ferredoxin	Shewanella denitrificans OS217 Gene: Sden_1954: Ferredoxin	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2135: Ferredoxin	Shewanella amazonensis SB2B Gene: Sama_1726: Ferredoxin	Shewanella loihica PV-4 Gene: Shew_1944: Ferredoxin	Shewanella pealeana ATCC 700345 Gene: Spea_2062: Ferredoxin	Shewanella halifaxensis HAW-EB4 Gene: Shal_2034: Ferredoxin	Shewanella piezotolerans WP3 Gene: swp_2475: Ferredoxin	Shewanella sediminis HAW-EB3 Gene: Ssed_2308: Ferredoxin	Shewanella woodyi ATCC 51908 Gene: Swoo_2301: Ferredoxin	Ferredoxin

CRON 2.
nrdD	* Shewanella oneidensis MR-1 Site: position = -79 score = 4.34778 sequence = TGCCTACATATTGTGT Site: position = -48 score = 5.18417 sequence = TCACTATATGTAGTGT Gene: SO2834: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella putrefaciens CN-32 Site: position = -48 score = 5.18417 sequence = TCACTATATGTAGTGT Site: position = -79 score = 4.39855 sequence = ACGCTATATATTGTGC Gene: Sputcn32_1540: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella sp W3-18-1 Site: position = -48 score = 5.18417 sequence = TCACTATATGTAGTGT Site: position = -79 score = 4.39855 sequence = ACGCTATATATTGTGC Gene: Sputw3181_2559: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella sp ANA-3 Site: position = -79 score = 4.28961 sequence = TGCCTAGATATTGTGT Site: position = -48 score = 4.99771 sequence = GCACTATATGTAGTGT Gene: Shewana3_2603: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella sp MR-4 Site: position = -79 score = 4.38656 sequence = TGCCTAGATATAGTGT Site: position = -48 score = 5.51078 sequence = ACACTATATGTAGTGT Gene: Shewmr4_2441: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella sp MR-7 Site: position = -79 score = 4.44473 sequence = TGCCTACATATAGTGT Site: position = -48 score = 5.51078 sequence = ACACTATATGTAGTGT Gene: Shewmr7_2511: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella baltica OS155 Site: position = -80 score = 4.38472 sequence = GCTCTACATATTGTGT Site: position = -49 score = 5.02129 sequence = TCACTAGATGTAGTGT Gene: Sbal_1665: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella denitrificans OS217 Site: position = -124 score = 4.13406 sequence = GCACAGCATATTGTGT Site: position = -93 score = 3.60417 sequence = AgtCTATATgTAGatT Gene: Sden_1419: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella frigidimarina NCIMB 400 Site: position = -33 score = 3.98243 sequence = GCGCTATATATAGTGC Site: position = -64 score = 4.6859 sequence = ACACTCTATCTTGTGT Gene: Sfri_2443: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella amazonensis SB2B Site: position = -41 score = 4.05811 sequence = GCTCAACATATAGTGA Site: position = -72 score = 4.58685 sequence = ACACTACATTTTGTAT Gene: Sama_1275: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella loihica PV-4 Site: position = -49 score = 5.21242 sequence = ACACTATATATGGTGT Site: position = -80 score = 4.29385 sequence = GCGCTACATATTGTGT Gene: Shew_2449: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella pealeana ATCC 700345 Site: position = -50 score = 5.10242 sequence = GCACTATATATAGTGT Site: position = -81 score = 3.56417 sequence = gCgCcAcATATtGTGa Gene: Spea_2619: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella halifaxensis HAW-EB4 Site: position = -50 score = 5.10242 sequence = GCACTATATATAGTGT Site: position = -81 score = 4.07724 sequence = ACGCCACATATTGTGA Gene: Shal_2692: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella piezotolerans WP3 Site: position = -80 score = 3.56417 sequence = gCgCcAcATATtGTGa Site: position = -49 score = 5.25456 sequence = ATACTATATGTAGTGT Gene: swp_3165: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella sediminis HAW-EB3 Site: position = -49 score = 5.10772 sequence = ACACTATATGTGGTGT Site: position = -80 score = 4.1969 sequence = ACGCAACATATTGTGC Gene: Ssed_1600: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Shewanella woodyi ATCC 51908 Site: position = -49 score = 5.10772 sequence = ACACTATATGTGGTGT Site: position = -80 score = 4.1969 sequence = ACGCAACATATTGTGC Gene: Swoo_3049: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG	Shewanella oneidensis MR-1 Gene: SO2833: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella putrefaciens CN-32 Gene: Sputcn32_1541: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella sp W3-18-1 Gene: Sputw3181_2558: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella sp ANA-3 Gene: Shewana3_2602: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella sp MR-4 Gene: Shewmr4_2440: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella sp MR-7 Gene: Shewmr7_2510: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella baltica OS155 Gene: Sbal_1666: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella denitrificans OS217 Gene: Sden_1420: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2442: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella amazonensis SB2B Gene: Sama_1276: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella loihica PV-4 Gene: Shew_2448: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella pealeana ATCC 700345 Gene: Spea_2618: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella halifaxensis HAW-EB4 Gene: Shal_2691: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella piezotolerans WP3 Gene: swp_3164: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella sediminis HAW-EB3 Gene: Ssed_1601: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Shewanella woodyi ATCC 51908 Gene: Swoo_3048: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --