Profile of regulator NrdR in Shewanellaceae
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Regulog: | NrdR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO2834 | nrdD | -79 | 4.3 | TGCCTACATATTGTGT | |
| SO2834 | nrdD | -48 | 5.2 | TCACTATATGTAGTGT | |
| SO2415 | nrdA | -171 | 5 | ACACCATATCTTGTGT | |
| SO2415 | nrdA | -202 | 3.7 | CCTCACTATCTTGTAT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_2073 | nrdA | -171 | 5 | ACACCATATCTTGTGT | |
| Sputcn32_2073 | nrdA | -202 | 3.7 | CCTCACTATCTTGTAT | |
| Sputcn32_1540 | nrdD | -48 | 5.2 | TCACTATATGTAGTGT | |
| Sputcn32_1540 | nrdD | -79 | 4.4 | ACGCTATATATTGTGC | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_1939 | nrdA | -171 | 5 | ACACCATATCTTGTGT | |
| Sputw3181_1939 | nrdA | -202 | 3.7 | CCTCACTATCTTGTAT | |
| Sputw3181_2559 | nrdD | -48 | 5.2 | TCACTATATGTAGTGT | |
| Sputw3181_2559 | nrdD | -79 | 4.4 | ACGCTATATATTGTGC | |
| Shewanella sp ANA-3 | |||||
| Shewana3_2603 | nrdD | -79 | 4.3 | TGCCTAGATATTGTGT | |
| Shewana3_1969 | nrdA | -202 | 3.7 | CCTCACTATCTTGTAT | |
| Shewana3_1969 | nrdA | -171 | 5 | ACACCATATCTTGTGT | |
| Shewana3_2603 | nrdD | -48 | 5 | GCACTATATGTAGTGT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_1916 | nrdA | -202 | 3.7 | CCTCACTATCTTGTAT | |
| Shewmr4_1916 | nrdA | -171 | 5 | ACACCATATCTTGTGT | |
| Shewmr4_2441 | nrdD | -79 | 4.4 | TGCCTAGATATAGTGT | |
| Shewmr4_2441 | nrdD | -48 | 5.5 | ACACTATATGTAGTGT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_2062 | nrdA | -202 | 3.7 | CCTCACTATCTTGTAT | |
| Shewmr7_2062 | nrdA | -171 | 5 | ACACCATATCTTGTGT | |
| Shewmr7_2511 | nrdD | -79 | 4.4 | TGCCTACATATAGTGT | |
| Shewmr7_2511 | nrdD | -48 | 5.5 | ACACTATATGTAGTGT | |
| Shewanella baltica OS155 | |||||
| Sbal_2059 | nrdA | -172 | 5 | ACACCATATCTTGTGT | |
| Sbal_2059 | nrdA | -203 | 3.7 | CCTCACTATCTTGTAT | |
| Sbal_1665 | nrdD | -80 | 4.4 | GCTCTACATATTGTGT | |
| Sbal_1665 | nrdD | -49 | 5 | TCACTAGATGTAGTGT | |
| Shewanella denitrificans OS217 | |||||
| Sden_1419 | nrdD | -124 | 4.1 | GCACAGCATATTGTGT | |
| Sden_1952 | nrdA | -336 | 3.7 | ACTCACTATCTTGTAG | |
| Sden_1952 | nrdA | -304 | 5.4 | ACACTATATCTTGTGT | |
| Sden_1419 | nrdD | -93 | 3.6 | AgtCTATATgTAGatT | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_2133 | nrdA | -254 | 3.7 | CCTCACTATCTTGTAT | |
| Sfri_2133 | nrdA | -223 | 5 | ACACCATATCTTGTGT | |
| Sfri_2443 | nrdD | -33 | 4 | GCGCTATATATAGTGC | |
| Sfri_2443 | nrdD | -64 | 4.7 | ACACTCTATCTTGTGT | |
| Shewanella amazonensis SB2B | |||||
| Sama_1728 | nrdA | -126 | 3.7 | CCTCACTATCTTGTAT | |
| Sama_1728 | nrdA | -95 | 4.4 | GCACCATATCTTGTGT | |
| Sama_1275 | nrdD | -41 | 4.1 | GCTCAACATATAGTGA | |
| Sama_1275 | nrdD | -72 | 4.6 | ACACTACATTTTGTAT | |
| Shewanella loihica PV-4 | |||||
| Shew_1946 | nrdA | -149 | 5 | ACACCATATCTTGTGT | |
| Shew_1946 | nrdA | -180 | 3.7 | CCTCACTATCTTGTAT | |
| Shew_2449 | nrdD | -49 | 5.2 | ACACTATATATGGTGT | |
| Shew_2449 | nrdD | -80 | 4.3 | GCGCTACATATTGTGT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_2064 | nrdA | -165 | 5.2 | ACACCATATATAGTGT | |
| Spea_2064 | nrdA | -163 | 4.2 | ACCATATATAGTGTGT | |
| Spea_2619 | nrdD | -50 | 5.1 | GCACTATATATAGTGT | |
| Spea_2619 | nrdD | -81 | 3.6 | gCgCcAcATATtGTGa | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_2036 | nrdA | -163 | 4.2 | ACCATATATAGTGTGT | |
| Shal_2036 | nrdA | -165 | 5.2 | ACACCATATATAGTGT | |
| Shal_2692 | nrdD | -50 | 5.1 | GCACTATATATAGTGT | |
| Shal_2692 | nrdD | -81 | 4.1 | ACGCCACATATTGTGA | |
| Shewanella piezotolerans WP3 | |||||
| swp_3165 | nrdD | -80 | 3.6 | gCgCcAcATATtGTGa | |
| swp_2478 | nrdA | -48 | 5.1 | ACACCATATATTGTGT | |
| swp_2478 | nrdA | -50 | 3.9 | AAACACCATATATTGT | |
| swp_3165 | nrdD | -49 | 5.3 | ATACTATATGTAGTGT | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_1600 | nrdD | -49 | 5.1 | ACACTATATGTGGTGT | |
| Ssed_2306 | nrdA | -162 | 4.2 | ACCATATATAGTGTGT | |
| Ssed_2306 | nrdA | -164 | 5.2 | ACACCATATATAGTGT | |
| Ssed_1600 | nrdD | -80 | 4.2 | ACGCAACATATTGTGC | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_2303 | nrdA | -163 | 4.2 | ACCATATATAGTGTGT | |
| Swoo_2303 | nrdA | -165 | 5.2 | ACACCATATATAGTGT | |
| Swoo_3049 | nrdD | -49 | 5.1 | ACACTATATGTGGTGT | |
| Swoo_3049 | nrdD | -80 | 4.2 | ACGCAACATATTGTGC | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |