Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator NrdR in Shewanellaceae

Properties
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Regulog: NrdR - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO2834 nrdD -79 4.3 TGCCTACATATTGTGT
SO2834 nrdD -48 5.2 TCACTATATGTAGTGT
SO2415 nrdA -171 5 ACACCATATCTTGTGT
SO2415 nrdA -202 3.7 CCTCACTATCTTGTAT
Shewanella putrefaciens CN-32
Sputcn32_2073 nrdA -171 5 ACACCATATCTTGTGT
Sputcn32_2073 nrdA -202 3.7 CCTCACTATCTTGTAT
Sputcn32_1540 nrdD -48 5.2 TCACTATATGTAGTGT
Sputcn32_1540 nrdD -79 4.4 ACGCTATATATTGTGC
Shewanella sp W3-18-1
Sputw3181_1939 nrdA -171 5 ACACCATATCTTGTGT
Sputw3181_1939 nrdA -202 3.7 CCTCACTATCTTGTAT
Sputw3181_2559 nrdD -48 5.2 TCACTATATGTAGTGT
Sputw3181_2559 nrdD -79 4.4 ACGCTATATATTGTGC
Shewanella sp ANA-3
Shewana3_2603 nrdD -79 4.3 TGCCTAGATATTGTGT
Shewana3_1969 nrdA -202 3.7 CCTCACTATCTTGTAT
Shewana3_1969 nrdA -171 5 ACACCATATCTTGTGT
Shewana3_2603 nrdD -48 5 GCACTATATGTAGTGT
Shewanella sp MR-4
Shewmr4_1916 nrdA -202 3.7 CCTCACTATCTTGTAT
Shewmr4_1916 nrdA -171 5 ACACCATATCTTGTGT
Shewmr4_2441 nrdD -79 4.4 TGCCTAGATATAGTGT
Shewmr4_2441 nrdD -48 5.5 ACACTATATGTAGTGT
Shewanella sp MR-7
Shewmr7_2062 nrdA -202 3.7 CCTCACTATCTTGTAT
Shewmr7_2062 nrdA -171 5 ACACCATATCTTGTGT
Shewmr7_2511 nrdD -79 4.4 TGCCTACATATAGTGT
Shewmr7_2511 nrdD -48 5.5 ACACTATATGTAGTGT
Shewanella baltica OS155
Sbal_2059 nrdA -172 5 ACACCATATCTTGTGT
Sbal_2059 nrdA -203 3.7 CCTCACTATCTTGTAT
Sbal_1665 nrdD -80 4.4 GCTCTACATATTGTGT
Sbal_1665 nrdD -49 5 TCACTAGATGTAGTGT
Shewanella denitrificans OS217
Sden_1419 nrdD -124 4.1 GCACAGCATATTGTGT
Sden_1952 nrdA -336 3.7 ACTCACTATCTTGTAG
Sden_1952 nrdA -304 5.4 ACACTATATCTTGTGT
Sden_1419 nrdD -93 3.6 AgtCTATATgTAGatT
Shewanella frigidimarina NCIMB 400
Sfri_2133 nrdA -254 3.7 CCTCACTATCTTGTAT
Sfri_2133 nrdA -223 5 ACACCATATCTTGTGT
Sfri_2443 nrdD -33 4 GCGCTATATATAGTGC
Sfri_2443 nrdD -64 4.7 ACACTCTATCTTGTGT
Shewanella amazonensis SB2B
Sama_1728 nrdA -126 3.7 CCTCACTATCTTGTAT
Sama_1728 nrdA -95 4.4 GCACCATATCTTGTGT
Sama_1275 nrdD -41 4.1 GCTCAACATATAGTGA
Sama_1275 nrdD -72 4.6 ACACTACATTTTGTAT
Shewanella loihica PV-4
Shew_1946 nrdA -149 5 ACACCATATCTTGTGT
Shew_1946 nrdA -180 3.7 CCTCACTATCTTGTAT
Shew_2449 nrdD -49 5.2 ACACTATATATGGTGT
Shew_2449 nrdD -80 4.3 GCGCTACATATTGTGT
Shewanella pealeana ATCC 700345
Spea_2064 nrdA -165 5.2 ACACCATATATAGTGT
Spea_2064 nrdA -163 4.2 ACCATATATAGTGTGT
Spea_2619 nrdD -50 5.1 GCACTATATATAGTGT
Spea_2619 nrdD -81 3.6 gCgCcAcATATtGTGa
Shewanella halifaxensis HAW-EB4
Shal_2036 nrdA -163 4.2 ACCATATATAGTGTGT
Shal_2036 nrdA -165 5.2 ACACCATATATAGTGT
Shal_2692 nrdD -50 5.1 GCACTATATATAGTGT
Shal_2692 nrdD -81 4.1 ACGCCACATATTGTGA
Shewanella piezotolerans WP3
swp_3165 nrdD -80 3.6 gCgCcAcATATtGTGa
swp_2478 nrdA -48 5.1 ACACCATATATTGTGT
swp_2478 nrdA -50 3.9 AAACACCATATATTGT
swp_3165 nrdD -49 5.3 ATACTATATGTAGTGT
Shewanella sediminis HAW-EB3
Ssed_1600 nrdD -49 5.1 ACACTATATGTGGTGT
Ssed_2306 nrdA -162 4.2 ACCATATATAGTGTGT
Ssed_2306 nrdA -164 5.2 ACACCATATATAGTGT
Ssed_1600 nrdD -80 4.2 ACGCAACATATTGTGC
Shewanella woodyi ATCC 51908
Swoo_2303 nrdA -163 4.2 ACCATATATAGTGTGT
Swoo_2303 nrdA -165 5.2 ACACCATATATAGTGT
Swoo_3049 nrdD -49 5.1 ACACTATATGTGGTGT
Swoo_3049 nrdD -80 4.2 ACGCAACATATTGTGC
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