Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nrdD gene

Properties
Regulog: NrdR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Built upon 64 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -72
Score: 4.58685
Sequence: ACACTACATTTTGTAT
Position: -41
Score: 4.05811
Sequence: GCTCAACATATAGTGA
Locus tag: Sama_1275
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sama_1276
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -72 4.6 ACACTACATTTTGTAT Sama_1275
-41 4.1 GCTCAACATATAGTGA
Shewanella baltica OS155
Position: -80
Score: 4.38472
Sequence: GCTCTACATATTGTGT
Position: -49
Score: 5.02129
Sequence: TCACTAGATGTAGTGT
Locus tag: Sbal_1665
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sbal_1666
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -80 4.4 GCTCTACATATTGTGT Sbal_1665
-49 5 TCACTAGATGTAGTGT
Shewanella denitrificans OS217
Position: -124
Score: 4.13406
Sequence: GCACAGCATATTGTGT
Position: -93
Score: 3.60417
Sequence: AgtCTATATgTAGatT
Locus tag: Sden_1419
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sden_1420
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -124 4.1 GCACAGCATATTGTGT Sden_1419
-93 3.6 AgtCTATATgTAGatT
Shewanella frigidimarina NCIMB 400
Position: -64
Score: 4.6859
Sequence: ACACTCTATCTTGTGT
Position: -33
Score: 3.98243
Sequence: GCGCTATATATAGTGC
Locus tag: Sfri_2443
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sfri_2442
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -64 4.7 ACACTCTATCTTGTGT Sfri_2443
-33 4 GCGCTATATATAGTGC
Shewanella halifaxensis HAW-EB4
Position: -81
Score: 4.07724
Sequence: ACGCCACATATTGTGA
Position: -50
Score: 5.10242
Sequence: GCACTATATATAGTGT
Locus tag: Shal_2692
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shal_2691
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -81 4.1 ACGCCACATATTGTGA Shal_2692
-50 5.1 GCACTATATATAGTGT
Shewanella loihica PV-4
Position: -80
Score: 4.29385
Sequence: GCGCTACATATTGTGT
Position: -49
Score: 5.21242
Sequence: ACACTATATATGGTGT
Locus tag: Shew_2449
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shew_2448
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -80 4.3 GCGCTACATATTGTGT Shew_2449
-49 5.2 ACACTATATATGGTGT
Shewanella oneidensis MR-1
Position: -79
Score: 4.34778
Sequence: TGCCTACATATTGTGT
Position: -48
Score: 5.18417
Sequence: TCACTATATGTAGTGT
Locus tag: SO2834
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: SO2833
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -79 4.3 TGCCTACATATTGTGT SO2834
-48 5.2 TCACTATATGTAGTGT
Shewanella pealeana ATCC 700345
Position: -81
Score: 3.56417
Sequence: gCgCcAcATATtGTGa
Position: -50
Score: 5.10242
Sequence: GCACTATATATAGTGT
Locus tag: Spea_2619
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Spea_2618
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -81 3.6 gCgCcAcATATtGTGa Spea_2619
-50 5.1 GCACTATATATAGTGT
Shewanella piezotolerans WP3
Position: -80
Score: 3.56417
Sequence: gCgCcAcATATtGTGa
Position: -49
Score: 5.25456
Sequence: ATACTATATGTAGTGT
Locus tag: swp_3165
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: swp_3164
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -80 3.6 gCgCcAcATATtGTGa swp_3165
-49 5.3 ATACTATATGTAGTGT
Shewanella putrefaciens CN-32
Position: -79
Score: 4.39855
Sequence: ACGCTATATATTGTGC
Position: -48
Score: 5.18417
Sequence: TCACTATATGTAGTGT
Locus tag: Sputcn32_1540
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sputcn32_1541
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -79 4.4 ACGCTATATATTGTGC Sputcn32_1540
-48 5.2 TCACTATATGTAGTGT
Shewanella sediminis HAW-EB3
Position: -80
Score: 4.1969
Sequence: ACGCAACATATTGTGC
Position: -49
Score: 5.10772
Sequence: ACACTATATGTGGTGT
Locus tag: Ssed_1600
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Ssed_1601
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -80 4.2 ACGCAACATATTGTGC Ssed_1600
-49 5.1 ACACTATATGTGGTGT
Shewanella sp ANA-3
Position: -79
Score: 4.28961
Sequence: TGCCTAGATATTGTGT
Position: -48
Score: 4.99771
Sequence: GCACTATATGTAGTGT
Locus tag: Shewana3_2603
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewana3_2602
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -79 4.3 TGCCTAGATATTGTGT Shewana3_2603
-48 5 GCACTATATGTAGTGT
Shewanella sp MR-4
Position: -79
Score: 4.38656
Sequence: TGCCTAGATATAGTGT
Position: -48
Score: 5.51078
Sequence: ACACTATATGTAGTGT
Locus tag: Shewmr4_2441
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewmr4_2440
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -79 4.4 TGCCTAGATATAGTGT Shewmr4_2441
-48 5.5 ACACTATATGTAGTGT
Shewanella sp MR-7
Position: -79
Score: 4.44473
Sequence: TGCCTACATATAGTGT
Position: -48
Score: 5.51078
Sequence: ACACTATATGTAGTGT
Locus tag: Shewmr7_2511
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewmr7_2510
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -79 4.4 TGCCTACATATAGTGT Shewmr7_2511
-48 5.5 ACACTATATGTAGTGT
Shewanella sp W3-18-1
Position: -79
Score: 4.39855
Sequence: ACGCTATATATTGTGC
Position: -48
Score: 5.18417
Sequence: TCACTATATGTAGTGT
Locus tag: Sputw3181_2559
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sputw3181_2558
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -79 4.4 ACGCTATATATTGTGC Sputw3181_2559
-48 5.2 TCACTATATGTAGTGT
Shewanella woodyi ATCC 51908
Position: -80
Score: 4.1969
Sequence: ACGCAACATATTGTGC
Position: -49
Score: 5.10772
Sequence: ACACTATATGTGGTGT
Locus tag: Swoo_3049
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Swoo_3048
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD-nrdG -80 4.2 ACGCAACATATTGTGC Swoo_3049
-49 5.1 ACACTATATGTGGTGT
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