Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_1993
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 88
- Operons 32
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -160
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: Shew_1835
Name: ydhD
Funciton: Glutaredoxin-related protein
Shew_1835
ydhD
Glutaredoxin-related protein
Position: -87
Score: 4.4
Sequence: TTGATCGAGATCAG
Locus tag: Shew_3247
Name: Sama_0549
Funciton: Conserved hypothetical protein
Shew_3247
Sama_0549
Conserved hypothetical protein
Position: -318
Score: 4.9
Sequence: TTTATCTAGATCAA
Position: -166
Score: 4.6
Sequence: GTGATCTAGATCAC
Locus tag: Shew_2519
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Shew_2520
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Shew_2521
Name: mtrF
Funciton: Decaheme cytochrome c, MtrF
Shew_2519
mtrD
Periplasmic decaheme cytochrome c, MtrD
Shew_2520
mtrE
Outer membrane protein, MtrE
Shew_2521
mtrF
Decaheme cytochrome c, MtrF
Position: -158
Score: 4
Sequence: TTGACTTAGATCAC
Locus tag: Shew_1036
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
Shew_1036
cyaB
Adenylate cyclase (EC 4.6.1.1)
Position: -341
Score: 4.9
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4
Sequence: TTGATGGGGATCTA
Locus tag: Shew_1302
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shew_1303
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shew_1304
Name: ybgT
Funciton: Cyd operon protein YbgT
Shew_1302
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Shew_1303
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Shew_1304
ybgT
Cyd operon protein YbgT
Position: -80
Score: 4.5
Sequence: TTGTTTTAGATCAA
Locus tag: Shew_2655
Name: Shew_2655
Funciton: Conserved hypothetical protein
Shew_2655
Shew_2655
Conserved hypothetical protein
Position: -122
Score: 3.9
Sequence: GTGATCGACGTCAA
Locus tag: Shew_0332
Name: frdC2
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Shew_0333
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Shew_0334
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Shew_0335
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Shew_0332
frdC2
Fumarate reductase, cytochrome b subunit
Shew_0333
frdC1
Fumarate reductase, cytochrome b subunit
Shew_0334
frdA
Fumarate reductase, flavoprotein subunit
Shew_0335
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -217
Score: 5.6
Sequence: TTGATCTGGATCAA
Position: -174
Score: 4.5
Sequence: TTGATATTGCTCAA
Locus tag: Shew_1985
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Shew_1986
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Shew_1987
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Shew_1988
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Shew_1989
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Shew_1990
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Shew_1991
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Shew_1992
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Shew_1993
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Shew_1985
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shew_1986
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Shew_1987
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Shew_1988
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Shew_1989
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Shew_1990
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Shew_1991
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Shew_1992
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
Shew_1993
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -181
Score: 5.1
Sequence: ATGATCCAGATCAA
Locus tag: Shew_1768
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shew_1769
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shew_1770
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shew_1771
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shew_1772
Name: napC2
Funciton: Cytochrome c-type protein NapC
Shew_1768
napE2
Periplasmic nitrate reductase component NapE
Shew_1769
napD2
Periplasmic nitrate reductase component NapD
Shew_1770
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shew_1771
napB2
Nitrate reductase cytochrome c550-type subunit
Shew_1772
napC2
Cytochrome c-type protein NapC
Position: -129
Score: 4.8
Sequence: ATGATCTGCCTCAA
Locus tag: Shew_0844
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shew_0844
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -132
Score: 4.5
Sequence: TTGAGGCAGATCAT
Locus tag: Shew_0843
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shew_0842
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Shew_0843
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shew_0842
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -104
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Shew_2554
Name: ompW
Funciton: Outer membrane protein W precursor
Shew_2554
ompW
Outer membrane protein W precursor
Position: -72
Score: 4.6
Sequence: TTGATCTAAAACAA
Locus tag: Shew_1994
Name: uspE
Funciton: Universal stress protein E
Shew_1994
uspE
Universal stress protein E
Position: -153
Score: 4.2
Sequence: TTGATATGAATCAC
Locus tag: Shew_0743
Name: gltP
Funciton: Sodium/glutamate symport protein
Shew_0743
gltP
Sodium/glutamate symport protein
Position: -125
Score: 5.3
Sequence: TTGATCTAGCTCAA
Locus tag: Shew_0613
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shew_0614
Name: cydC
Funciton: Transport ATP-binding protein CydC
Shew_0613
cydD
Transport ATP-binding protein CydD
Shew_0614
cydC
Transport ATP-binding protein CydC
Position: -175
Score: 3.9
Sequence: TTGTTTAAGATCAA
Locus tag: Shew_0086
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shew_0086
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -33
Score: 5.3
Sequence: TTGATTTAGATCAA
Locus tag: Shew_2873
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Shew_2872
Name: bfr1
Funciton: Bacterioferritin
Shew_2873
bfr2
Bacterioferritin
Shew_2872
bfr1
Bacterioferritin
Position: -317
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Shew_0125
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Shew_0124
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Shew_0123
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Shew_0122
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Shew_0125
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Shew_0124
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Shew_0123
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
Shew_0122
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -282
Score: 4.3
Sequence: TAGATCTTGATCAT
Locus tag: Shew_3155
Name: nrfX
Funciton: Nitrite reductase, predicted component
Locus tag: Shew_3156
Name: nrfB
Funciton: Nitrite reductase, subunit B
Locus tag: Shew_3157
Name: nrfC
Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Shew_3158
Name: nrfD
Funciton: Nitrite reductase, cytochrome c subunit
Shew_3155
nrfX
Nitrite reductase, predicted component
Shew_3156
nrfB
Nitrite reductase, subunit B
Shew_3157
nrfC
Nitrite reductase, 4Fe-4S ferredoxin subunit
Shew_3158
nrfD
Nitrite reductase, cytochrome c subunit
Position: -94
Score: 4.7
Sequence: TTGAGATAGATCAT
Locus tag: Shew_2050
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Shew_2050
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -150
Score: 4.7
Sequence: TTGATCTCGATCTA
Locus tag: Shew_3205
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shew_3206
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shew_3207
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shew_3208
Name: napH
Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Shew_3209
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Shew_3205
napD
Periplasmic nitrate reductase component NapD
Shew_3206
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shew_3207
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
Shew_3208
napH
Polyferredoxin NapH (periplasmic nitrate reductase)
Shew_3209
napB
Nitrate reductase cytochrome c550-type subunit
Position: -154
Score: 4.2
Sequence: TTGATCTTAAACAA
Locus tag: Shew_0087
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shew_0088
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: Shew_0089
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shew_0090
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Shew_0091
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shew_0092
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shew_0093
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shew_0094
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Shew_0087
moaA
Molybdenum cofactor biosynthesis protein MoaA
Shew_0088
moaB
Molybdenum cofactor biosynthesis protein MoaB
Shew_0089
moaC
Molybdenum cofactor biosynthesis protein MoaC
Shew_0090
moaD
Molybdenum cofactor biosynthesis protein D
Shew_0091
moaE
Molybdenum cofactor biosynthesis protein MoaE
Shew_0092
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Shew_0093
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Shew_0094
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -186
Score: 5
Sequence: TTGAACTGGATCAT
Locus tag: Shew_0053
Name: fdhD
Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Shew_0052
Name: SO4502
Funciton: Conserved hupothetical protein
Shew_0053
fdhD
Formate dehydrogenase chain D (EC 1.2.1.2)
Shew_0052
SO4502
Conserved hupothetical protein
Position: -162
Score: 5.3
Sequence: ATGATCTAGATCAT
Locus tag: Shew_3135
Name: lldP
Funciton: L-lactate permease
Locus tag: Shew_3136
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Shew_3135
lldP
L-lactate permease
Shew_3136
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -113
Score: 5.1
Sequence: ATGATCTTGATCAA
Locus tag: Shew_3354
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Shew_3354
nifS
Cysteine desulfurase (EC 2.8.1.7)
Position: -136
Score: 4.1
Sequence: GTGATCTGATTCAT
Locus tag: Shew_3424
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shew_3424
acnB
Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -121
Score: 4.1
Sequence: TTGATCCGCTTCAT
Locus tag: Shew_1069
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Shew_1070
Name: hcr
Funciton: HCP oxidoreductase, NADH-dependent
Shew_1069
hcp
Hydroxylamine reductase (EC 1.7.-.-)
Shew_1070
hcr
HCP oxidoreductase, NADH-dependent
Position: -220
Score: 4.7
Sequence: TTGAAGCGGATCAA
Position: -160
Score: 4.8
Sequence: TTGATCCAGCTCAT
Position: -99
Score: 4.2
Sequence: TTGACATACATCAA
Locus tag: Shew_1765
Name: hyaA
Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shew_1764
Name: hyaB
Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shew_1763
Name: hyaC
Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shew_1762
Name: hyaD
Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shew_1761
Name: hyaE
Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shew_1760
Name: hyaF
Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Shew_1765
hyaA
Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Shew_1764
hyaB
Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Shew_1763
hyaC
Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Shew_1762
hyaD
Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Shew_1761
hyaE
Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Shew_1760
hyaF
Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -122
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Shew_2449
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shew_2448
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Shew_2449
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shew_2448
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -241
Score: 4.6
Sequence: GTGATCTAGATCAC
Position: -89
Score: 4.9
Sequence: TTGATCTAGATAAA
Locus tag: Shew_2518
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Shew_2517
Name: feoB
Funciton: Ferrous iron transport protein B
Shew_2518
feoA
Ferrous iron transport protein A
Shew_2517
feoB
Ferrous iron transport protein B
Position: -124
Score: 4.6
Sequence: TTGATATAGGTCAA
Locus tag: Shew_3263
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
Shew_3263
SO0579
Predicted serine/threonine protein kinase
Position: -123
Score: 4.5
Sequence: ATGATCCAGTTCAA
Locus tag: Shew_0054
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: Shew_0055
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Shew_0056
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Shew_0057
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Shew_0058
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Shew_0059
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Shew_0060
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shew_0061
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
Shew_0054
SO4504
Conserved hypothetical protein
Shew_0055
SO4505
Predicted formate dehydrogenase associated protein
Shew_0056
SO4506
Predicted iron-sulfur cluster-binding protein
Shew_0057
SO4507
Predicted formate dehydrogenase-specific chaperone
Shew_0058
fdhX
Formate dehydrogenase subunit or accessory protein
Shew_0059
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
Shew_0060
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Shew_0061
fdhC1
Formate dehydrogenase, gamma subunit
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