Regulon of ArgR in Shewanella loihica PV-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shew_0866
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	35
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -139 Score: 5 Sequence: GCTGCATATAAATGCACC Locus tag: Shew_0845 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	Shew_0845	SO0762	Isochorismate hydrolase (EC 3.3.2.1)
Position: -304 Score: 5 Sequence: TGTGACTATATATTCATA Position: -244 Score: 4 Sequence: TCTGACTATTTATGCTCA Locus tag: Shew_0578 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Shew_0579 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Shew_0580 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Shew_0581 Name: SO0620 Funciton: Conserved hypothetical protein
	Shew_0578	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Shew_0579	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Shew_0580	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Shew_0581	SO0620	Conserved hypothetical protein
Position: -57 Score: 4.9 Sequence: AATGCATAAAGATTCATT Locus tag: Shew_0203 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Shew_0204 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Shew_0205 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Shew_0206 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Shew_0203	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Shew_0204	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Shew_0205	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Shew_0206	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -90 Score: 4.5 Sequence: CATGAATGGATATTCAGA Locus tag: Shew_2790 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Shew_2790	argW	Predicted arginine uptake transporter, COG3314 family
Position: -53 Score: 4.2 Sequence: TATGCAATAATATTGAAT Locus tag: Shew_0201 Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
	Shew_0201	argE	Acetylornithine deacetylase (EC 3.5.1.16)
Position: -61 Score: 5.1 Sequence: ACTGTATAAAAATTCAGT Locus tag: Shew_1196 Name: recN Funciton: DNA repair protein RecN
	Shew_1196	recN	DNA repair protein RecN
Position: -229 Score: 4.2 Sequence: TTCGAATAAATACTCAAA Position: -166 Score: 4.5 Sequence: TCTGCATAAAAATGCTCT Locus tag: Shew_2443 Name: aprE Funciton: Alkaline serine protease
	Shew_2443	aprE	Alkaline serine protease
Position: -80 Score: 5.5 Sequence: TGTGAATTTAAATGCAAT Locus tag: Shew_3478 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Shew_3478	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -83 Score: 4.2 Sequence: TTTGAATGAACGTTCAAA Locus tag: Shew_3098 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Shew_3098	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -249 Score: 3.7 Sequence: TAAAAATATCTATTCAAT Position: -228 Score: 3.5 Sequence: ATTGCATAATTAGTTTGT Locus tag: Shew_0202 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Shew_0202	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -324 Score: 3.8 Sequence: TTTGTTAAATAATTCACT Position: -303 Score: 4.3 Sequence: TATGCAATAAAAATCACT Locus tag: Shew_1032 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Shew_1031 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Shew_1032	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Shew_1031	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -609 Score: 4.7 Sequence: AGTGCATTTAAATTGAAG Locus tag: Shew_2074 Name: omp(Arg) Funciton: TonB-dependent receptor
	Shew_2074	omp(Arg)	TonB-dependent receptor
Position: -377 Score: 4.3 Sequence: ATTGCATAATCTTGCATA Position: -331 Score: 4 Sequence: ATTCAATTTTCAAGCAGA Locus tag: Shew_1219 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Shew_1220 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Shew_1221 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Shew_1219	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Shew_1220	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Shew_1221	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -95 Score: 5.1 Sequence: CCTGAATTTTTATTCACA Locus tag: Shew_0866 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Shew_0866	argR	Arginine metabolism transcriptional regulator ArgR
Position: -179 Score: 4.2 Sequence: ATTAGATATAAATTCATA Locus tag: Shew_0973 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Shew_0974 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Shew_0975 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Shew_0976 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Shew_0973	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Shew_0974	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Shew_0975	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Shew_0976	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -103 Score: 4.6 Sequence: AATGACTAAATAGTCATT Position: -82 Score: 3.7 Sequence: ATCGCATAAGTATTGACT Locus tag: Shew_3166 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Shew_3165 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Shew_3164 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Shew_3166	artI	Arginine ABC transporter, substrate-binding protein
	Shew_3165	artQ	Arginine ABC transporter, permease protein
	Shew_3164	artM	Arginine ABC transporter, ATP-binding protein
Position: -166 Score: 4.5 Sequence: AGTGATTATTAAATCACA Locus tag: Shew_0289 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Shew_0290 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Shew_0291 Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) Locus tag: Shew_0292 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Shew_0293 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Shew_0289	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Shew_0290	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Shew_0291	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	Shew_0292	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Shew_0293	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella loihica PV-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --