Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_0127
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Shewanellaceae
Statistics of regulated genes:
- Genes 17
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -71
Score: 5.1
Sequence: ATATGTATATATTTACAGTA
Locus tag: Shew_3507
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Shew_3507
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -45
Score: 4.9
Sequence: TACTGTATATACTGACAGGT
Position: -26
Score: 4.8
Sequence: TACTGTATGGAAAGACAGGA
Locus tag: Shew_0127
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Shew_0126
Name: sulA
Funciton: Cell division inhibitor sulA
Shew_0127
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Shew_0126
sulA
Cell division inhibitor sulA
Position: -32
Score: 5.9
Sequence: TACTGTTAATTTATACAGTA
Locus tag: Shew_2299
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
Shew_2299
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -127
Score: 5.6
Sequence: TACTGTATGATTGTACAGTA
Locus tag: Shew_1215
Name: recA
Funciton: Recombinase A
Locus tag: Shew_1216
Name: recX
Funciton: Regulatory protein RecX
Shew_1215
recA
Recombinase A
Shew_1216
recX
Regulatory protein RecX
Position: -62
Score: 5.7
Sequence: TACTGTATAAAAATTCAGTA
Position: -40
Score: 4.9
Sequence: TACTGTGCATGAATACAGTA
Locus tag: Shew_1196
Name: recN
Funciton: DNA repair protein RecN
Shew_1196
recN
DNA repair protein RecN
Position: -43
Score: 5.4
Sequence: CACTGTTATTATGTACAGCA
Locus tag: Shew_2483
Name: dinG
Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Shew_2484
Name: SO1818
Funciton: protein of unknown function DUF81
Locus tag: Shew_2485
Name: SO1817
Funciton: Primosomal replication protein N prime-like protein
Shew_2483
dinG
ATP-dependent helicase DinG/Rad3
Shew_2484
SO1818
protein of unknown function DUF81
Shew_2485
SO1817
Primosomal replication protein N prime-like protein
Position: -31
Score: 5.7
Sequence: AACTGTATATAAAAACAGTG
Locus tag: Shew_1799
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Shew_1800
Name: yebR
Funciton: COG1956, GAF domain-containing protein
Shew_1799
yebG
SOS regulon DNA damage-inducible protein
Shew_1800
yebR
COG1956, GAF domain-containing protein
Position: -43
Score: 5.9
Sequence: TACTGTTTAAATGTACAGTA
Locus tag: Shew_2871
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
Shew_2871
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -145
Score: 6.1
Sequence: TACTGTATTTATATACAGTG
Locus tag: Shew_2102
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Shew_2101
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Shew_2100
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Shew_2102
imuA
Predicted RecA/RadA recombinase
Shew_2101
imuB
DNA polymerase-like protein PA0670
Shew_2100
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -299
Score: 5.5
Sequence: CGCTGTTTATTTATACAGTG
Locus tag: Shew_3147
Name: xerC
Funciton: Integron integrase IntI2
Shew_3147
xerC
Integron integrase IntI2
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