Regulon of LexA in Shewanella loihica PV-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shew_0127 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -71
Score: 5.1 Sequence: ATATGTATATATTTACAGTA
Locus tag: Shew_3507
Name: recG Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
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recG
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ATP-dependent DNA helicase RecG (EC 3.6.1.-)
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Position: -45
Score: 4.9 Sequence: TACTGTATATACTGACAGGT
Position: -26
Score: 4.8 Sequence: TACTGTATGGAAAGACAGGA
Locus tag: Shew_0127
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Shew_0126
Name: sulA Funciton: Cell division inhibitor sulA |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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sulA
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Cell division inhibitor sulA
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Position: -32
Score: 5.9 Sequence: TACTGTTAATTTATACAGTA
Locus tag: Shew_2299
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -127
Score: 5.6 Sequence: TACTGTATGATTGTACAGTA
Locus tag: Shew_1215
Name: recA Funciton: Recombinase A
Locus tag: Shew_1216
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -62
Score: 5.7 Sequence: TACTGTATAAAAATTCAGTA
Position: -40
Score: 4.9 Sequence: TACTGTGCATGAATACAGTA
Locus tag: Shew_1196
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -43
Score: 5.4 Sequence: CACTGTTATTATGTACAGCA
Locus tag: Shew_2483
Name: dinG Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Shew_2484
Name: SO1818 Funciton: protein of unknown function DUF81
Locus tag: Shew_2485
Name: SO1817 Funciton: Primosomal replication protein N prime-like protein |
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dinG
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ATP-dependent helicase DinG/Rad3
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SO1818
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protein of unknown function DUF81
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SO1817
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Primosomal replication protein N prime-like protein
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Position: -31
Score: 5.7 Sequence: AACTGTATATAAAAACAGTG
Locus tag: Shew_1799
Name: yebG Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Shew_1800
Name: yebR Funciton: COG1956, GAF domain-containing protein |
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yebG
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SOS regulon DNA damage-inducible protein
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yebR
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COG1956, GAF domain-containing protein
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Position: -43
Score: 5.9 Sequence: TACTGTTTAAATGTACAGTA
Locus tag: Shew_2871
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -145
Score: 6.1 Sequence: TACTGTATTTATATACAGTG
Locus tag: Shew_2102
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: Shew_2101
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: Shew_2100
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -299
Score: 5.5 Sequence: CGCTGTTTATTTATACAGTG
Locus tag: Shew_3147
Name: xerC Funciton: Integron integrase IntI2 |
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xerC
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Integron integrase IntI2
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |