Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of MetJ in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_0519
Regulator family: MetJ
Regulation mode: repressor
Biological process: Methionine biosynthesis; Methionine metabolism
Effector: S-adenosylmethionine
Regulog: MetJ - Shewanellaceae
Statistics of regulated genes:
- Genes 15
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 397 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -172
Score: 7.1
Sequence: AAACATCT-(0)-AGACGTCT
Position: -164
Score: 5.3
Sequence: AGACGTCT-(0)-AAATTGAC
Locus tag: Shew_3178
Name: metT
Funciton: Methionine transporter MetT, NhaC antiporter family
Shew_3178
metT
Methionine transporter MetT, NhaC antiporter family
Position: -115
Score: 6.7
Sequence: GGACGTCT-(0)-AAACGTCC
Position: -61
Score: 7.2
Sequence: AGACGTCC-(0)-AGACATCT
Locus tag: Shew_0520
Name: metB
Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: Shew_0521
Name: metL
Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Shew_0520
metB
Cystathionine gamma-synthase (EC 2.5.1.48)
Shew_0521
metL
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Position: -48
Score: 6.2
Sequence: AGACATAT-(0)-GGACATCC
Position: -40
Score: 6.3
Sequence: GGACATCC-(0)-AGAAGTCT
Position: -32
Score: 5.6
Sequence: AGAAGTCT-(0)-TGATGTAT
Locus tag: Shew_2552
Name: COG3126
Funciton: Lipoprotein-related protein
Locus tag: Shew_2551
Name: metA
Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
Shew_2552
COG3126
Lipoprotein-related protein
Shew_2551
metA
Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -61
Score: 5.4
Sequence: GGCCGTCT-(0)-AGATGTAG
Position: -53
Score: 5.2
Sequence: AGATGTAG-(0)-ATACTTCT
Locus tag: Shew_0751
Name: metK
Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
Shew_0751
metK
S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -81
Score: 6.4
Sequence: AAACATTT-(0)-AGACATCT
Position: -73
Score: 6.9
Sequence: AGACATCT-(0)-AGAAGTCT
Locus tag: Shew_2710
Name: metY
Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Shew_2710
metY
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -97
Score: 6.7
Sequence: AGGCGTCT-(0)-GGACGTCT
Position: -89
Score: 6.4
Sequence: GGACGTCT-(0)-AGAAGTTT
Locus tag: Shew_2987
Name: metR
Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Shew_2987
metR
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Position: -97
Score: 6.6
Sequence: AGACGTCT-(0)-ATACGTTT
Position: -89
Score: 5.5
Sequence: ATACGTTT-(0)-ATACATCC
Locus tag: Shew_0710
Name: metH
Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Shew_0710
metH
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -179
Score: 7
Sequence: AGATGTCT-(0)-GGACGTCT
Position: -171
Score: 6
Sequence: GGACGTCT-(0)-AAATGTAC
Position: -125
Score: 6.6
Sequence: GGACGTTT-(0)-AGACGTCC
Position: -117
Score: 6.4
Sequence: AGACGTCC-(0)-AAACATTT
Position: -109
Score: 5.9
Sequence: AAACATTT-(0)-AGAAATCT
Locus tag: Shew_0519
Name: metJ
Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ
Shew_0519
metJ
S-adenosylmethionine-responsive transcriptional repressor MetJ
Position: -58
Score: 6.4
Sequence: GGACATAT-(0)-AGACGTCC
Position: -50
Score: 7.1
Sequence: AGACGTCC-(0)-AAACGTCT
Locus tag: Shew_0522
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Shew_0522
metF
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Position: -128
Score: 6.5
Sequence: AGCCGTCT-(0)-AGCCATCT
Position: -120
Score: 6.3
Sequence: AGCCATCT-(0)-AAACGTAT
Locus tag: Shew_1923
Name: msrA
Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Shew_1923
msrA
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Position: -432
Score: 5.6
Sequence: AGACATTT-(0)-ATACGTGT
Position: -424
Score: 6.2
Sequence: ATACGTGT-(0)-AGACGTCT
Locus tag: Shew_2990
Name: btuB
Funciton: TonB-dependent outer membrane transporter for vitamin B12
Shew_2990
btuB
TonB-dependent outer membrane transporter for vitamin B12
Position: -53
Score: 5.5
Sequence: AGCCGTAT-(0)-AGATGTTA
Position: -45
Score: 5.3
Sequence: AGATGTTA-(0)-AGATGGCT
Locus tag: Shew_1789
Name: metC
Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
Shew_1789
metC
Cystathionine beta-lyase (EC 4.4.1.8)
Position: -127
Score: 6.6
Sequence: AAACTTCT-(0)-AGACGTCC
Position: -119
Score: 6.8
Sequence: AGACGTCC-(0)-AGACGCCT
Locus tag: Shew_2986
Name: metE
Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Shew_2986
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
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