Regulon of TPP in Shewanella loihica PV-4

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -192 Score: 69.4 Sequence: GCCTCGCCAAGGGGT... Locus tag: Shew_1735 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Shew_1736 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Shew_1737 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Shew_1738 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Shew_1735	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Shew_1736	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Shew_1737	pnuT	Predicted thiamin transporter PnuT
	Shew_1738	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -277 Score: 68.1 Sequence: GCCCCTCTTGTCGGA... Locus tag: Shew_2096 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Shew_2095 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Shew_2094 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Shew_2093 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Shew_2092 Name: thiG Funciton: Thiazole synthase Locus tag: Shew_2091 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Shew_2096	thiC	Phosphomethylpyrimidine synthase
	Shew_2095	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Shew_2094	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Shew_2093	thiS	Sulfur carrier protein ThiS
	Shew_2092	thiG	Thiazole synthase
	Shew_2091	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD