Regulon of MalR in Shewanella loihica PV-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shew_1870 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Maltodextrin utilization |
| Effector: | Maltose |
| Regulog: | MalR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LacI
- By effector - Maltose
- By pathway - Maltodextrin utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -316
Score: 5.6 Sequence: GATGAATACGTATGTAAT
Locus tag: Shew_1874
Name: malT Funciton: Predicted maltose transporter MalT
Locus tag: Shew_1873
Name: cga Funciton: Glucoamylase (EC 3.2.1.3) |
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malT
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Predicted maltose transporter MalT
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cga
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Glucoamylase (EC 3.2.1.3)
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Position: -343
Score: 6.2 Sequence: ACTGCATACGTATGCAAA
Position: -192
Score: 6.1 Sequence: TTTGAATACGTATGCATA
Locus tag: Shew_1888
Name: omp(Mal) Funciton: Predicted maltose-specific TonB-dependent receptor
Locus tag: Shew_1887
Name: susA Funciton: Neopullulanase (EC 3.2.1.135)
Locus tag: Shew_1886
Name: amy2 Funciton: Alpha-amylase (EC 3.2.1.1) |
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omp(Mal)
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Predicted maltose-specific TonB-dependent receptor
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susA
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Neopullulanase (EC 3.2.1.135)
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amy2
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Alpha-amylase (EC 3.2.1.1)
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Position: -164
Score: 5.9 Sequence: GGTGAATACGTATGCAGC
Locus tag: Shew_1876
Name: susB Funciton: Alpha-glucosidase (EC 3.2.1.20) |
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susB
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Alpha-glucosidase (EC 3.2.1.20)
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Position: -311
Score: 6.1 Sequence: TATGCATACGTATTCAAA
Position: -160
Score: 6.2 Sequence: TTTGCATACGTATGCAGT
Locus tag: Shew_1889
Name: malZ Funciton: Maltodextrin glucosidase (EC 3.2.1.20)
Locus tag: Shew_1890
Name: glcP Funciton: Predicted glucose transporter in maltodextrin utilization gene cluster |
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malZ
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Maltodextrin glucosidase (EC 3.2.1.20)
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glcP
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Predicted glucose transporter in maltodextrin utilization gene cluster
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |