Regulog MalR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Maltodextrin utilization
Effector:	Maltose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 67 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LacI
By effector - Maltose
By pathway - Maltodextrin utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	4	3
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3	8	4
Shewanella sp MR-4	8	4
Shewanella sp MR-7	8	4
Shewanella baltica OS155	7	4
Shewanella denitrificans OS217	10	5
Shewanella frigidimarina NCIMB 400	9	4
Shewanella amazonensis SB2B	10	5
Shewanella loihica PV-4	8	4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3	10	5
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908	9	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
malZ	Shewanella oneidensis MR-1 Gene: SO_2213: Maltodextrin glucosidase (EC 3.2.1.20)	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -163 score = 6.20625 sequence = TTTGCATACGTATGCAGG Site: position = -312 score = 6.06654 sequence = TGTGCATACGTATTCAAT Gene: Shewana3_2311: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella sp MR-4 Site: position = -312 score = 6.06654 sequence = TGTGCATACGTATTCAAT Site: position = -163 score = 6.20625 sequence = TTTGCATACGTATGCAGG Gene: Shewmr4_2133: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella sp MR-7 Site: position = -312 score = 6.06654 sequence = TGTGCATACGTATTCAAT Site: position = -163 score = 6.20625 sequence = TTTGCATACGTATGCAGG Gene: Shewmr7_2209: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella baltica OS155 Site: position = -312 score = 5.99022 sequence = AGTGCATACGTATTCAAT Site: position = -163 score = 6.17355 sequence = TCTGCATACGTATGCAGG Gene: Sbal_2287: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella denitrificans OS217 Site: position = -143 score = 6.22531 sequence = TTTGCATACGTATGCAGT Site: position = -292 score = 6.05528 sequence = TATGCATACGTATTCAAT Gene: Sden_2028: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella frigidimarina NCIMB 400 Site: position = -147 score = 6.20625 sequence = TTTGCATACGTATGCAGG Site: position = -296 score = 6.02573 sequence = TATGCATACGTATTCAAC Gene: Sfri_1788: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella amazonensis SB2B Site: position = -167 score = 6.10124 sequence = TGTGCATACGTATGCAGC Site: position = -317 score = 6.06654 sequence = AGTGCATACGTATTCAAA Gene: Sama_1662: Maltodextrin glucosidase (EC 3.2.1.20)	* Shewanella loihica PV-4 Site: position = -311 score = 6.1316 sequence = TATGCATACGTATTCAAA Site: position = -160 score = 6.22531 sequence = TTTGCATACGTATGCAGT Gene: Shew_1889: Maltodextrin glucosidase (EC 3.2.1.20)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -154 score = 5.8854 sequence = ATTACATACGTATGCAGA Site: position = -303 score = 6.05528 sequence = TATGCATACGTATTCAAT Gene: swp_2670: Maltodextrin glucosidase (EC 3.2.1.20)	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -198 score = 6.1316 sequence = TATGCATACGTATTCAAA Site: position = -47 score = 6.19586 sequence = TATGCATACGTATGCAGA Gene: Swoo_2210: Maltodextrin glucosidase (EC 3.2.1.20)	Maltodextrin glucosidase (EC 3.2.1.20)
glcP	Shewanella oneidensis MR-1 Gene: SO_2213.1: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2310: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella sp MR-4 Gene: Shewmr4_2132: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella sp MR-7 Gene: Shewmr7_2208: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella baltica OS155 Gene: Sbal_2286: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella denitrificans OS217 Gene: Sden_2027: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1789: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella amazonensis SB2B Gene: Sama_1663: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella loihica PV-4 Gene: Shew_1890: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_2669: Predicted glucose transporter in maltodextrin utilization gene cluster	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_2211: Predicted glucose transporter in maltodextrin utilization gene cluster	Predicted glucose transporter in maltodextrin utilization gene cluster

CRON 2.
susB	* Shewanella oneidensis MR-1 Site: position = -90 score = 5.41109 sequence = GTGGAATACGTATGCAAG Gene: SO_2450: Alpha-glucosidase (EC 3.2.1.20)	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -90 score = 6.03698 sequence = GGTGAATACGTATGCAAA Gene: Shewana3_1931: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella sp MR-4 Site: position = -90 score = 6.03698 sequence = GGTGAATACGTATGCAAA Gene: Shewmr4_1876: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella sp MR-7 Site: position = -90 score = 6.03698 sequence = GGTGAATACGTATGCAAA Gene: Shewmr7_2102: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella baltica OS155 Site: position = -90 score = 5.90891 sequence = GGTGAATACGTATGCAGG Gene: Sbal_2329: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella denitrificans OS217 Site: position = -100 score = 5.66038 sequence = CCTGAATACGTATGTAGT Gene: Sden_2002: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella frigidimarina NCIMB 400 Site: position = -92 score = 6.12836 sequence = ACTGAATACGTATGCAAA Gene: Sfri_1777: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella amazonensis SB2B Site: position = -89 score = 5.96024 sequence = GCTGAATACGTATGCAGC Gene: Sama_1108: Alpha-glucosidase (EC 3.2.1.20)	* Shewanella loihica PV-4 Site: position = -164 score = 5.89842 sequence = GGTGAATACGTATGCAGC Gene: Shew_1876: Alpha-glucosidase (EC 3.2.1.20)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -111 score = 6.14198 sequence = TTTGAATACGTATGCAAG Gene: swp_2676: Alpha-glucosidase (EC 3.2.1.20)	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Alpha-glucosidase (EC 3.2.1.20)

CRON 3.
malT	* Shewanella oneidensis MR-1 Site: position = -393 score = 5.59044 sequence = gaTGaATACGTATGtAAg Gene: SO_2458: Predicted maltose transporter MalT	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -377 score = 5.59044 sequence = GATGAATACGTATGTAAG Gene: Shewana3_1925: Predicted maltose transporter MalT	* Shewanella sp MR-4 Site: position = -378 score = 5.59044 sequence = GATGAATACGTATGTAAG Gene: Shewmr4_1870: Predicted maltose transporter MalT	* Shewanella sp MR-7 Site: position = -378 score = 5.59044 sequence = GATGAATACGTATGTAAG Gene: Shewmr7_2108: Predicted maltose transporter MalT	* Shewanella baltica OS155 Site: position = -518 score = 5.59044 sequence = gaTGaATACGTATGtAAg Gene: Sbal_2347: Predicted maltose transporter MalT	* Shewanella denitrificans OS217 Site: position = -294 score = 5.57681 sequence = GATGAATACGTATGTAGT Gene: Sden_2003: Predicted maltose transporter MalT	* Shewanella frigidimarina NCIMB 400 Site: position = -353 score = 5.5873 sequence = CATGAATACGTATGTAGT Gene: Sfri_1776: Predicted maltose transporter MalT	* Shewanella amazonensis SB2B Site: position = -268 score = 5.59044 sequence = GATGAATACGTATGTAAG Gene: Sama_1657: Predicted maltose transporter MalT	* Shewanella loihica PV-4 Site: position = -316 score = 5.6095 sequence = GATGAATACGTATGTAAT Gene: Shew_1874: Predicted maltose transporter MalT	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -469 score = 5.51423 sequence = caTGaATACGTATGtAtt Gene: swp_2681: Predicted maltose transporter MalT	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -282 score = 5.94084 sequence = CATGAATACGTATGCAAG Gene: Swoo_2202: Predicted maltose transporter MalT	Predicted maltose transporter MalT
cga	Shewanella oneidensis MR-1 Gene: SO_2459: Glucoamylase (EC 3.2.1.3)	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_1924: Glucoamylase (EC 3.2.1.3)	Shewanella sp MR-4 Gene: Shewmr4_1869: Glucoamylase (EC 3.2.1.3)	Shewanella sp MR-7 Gene: Shewmr7_2109: Glucoamylase (EC 3.2.1.3)	2 Shewanella baltica OS155 Gene: Sbal_2349: Glucoamylase (EC 3.2.1.3) Gene: Sbal_2348: Glucoamylase (EC 3.2.1.3)	Shewanella denitrificans OS217 Gene: Sden_2004: Glucoamylase (EC 3.2.1.3)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1775: Glucoamylase (EC 3.2.1.3)	Shewanella amazonensis SB2B Gene: Sama_1656: Glucoamylase (EC 3.2.1.3)	Shewanella loihica PV-4 Gene: Shew_1873: Glucoamylase (EC 3.2.1.3)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_2682: Glucoamylase (EC 3.2.1.3)	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_2201: Glucoamylase (EC 3.2.1.3)	Glucoamylase (EC 3.2.1.3)

CRON 4.
omp(Mal)	* Shewanella oneidensis MR-1 Site: position = -202 score = 6.06654 sequence = ATTGAATACGTATGCACA Site: position = -351 score = 6.20625 sequence = CCTGCATACGTATGCAAA Gene: SO_2162: Predicted maltose-specific TonB-dependent receptor	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -204 score = 6.06654 sequence = ATTGAATACGTATGCACA Site: position = -353 score = 6.20625 sequence = CCTGCATACGTATGCAAA Gene: Shewana3_2312: Predicted maltose-specific TonB-dependent receptor	* Shewanella sp MR-4 Site: position = -204 score = 6.06654 sequence = ATTGAATACGTATGCACA Site: position = -353 score = 6.20625 sequence = CCTGCATACGTATGCAAA Gene: Shewmr4_2134: Predicted maltose-specific TonB-dependent receptor	* Shewanella sp MR-7 Site: position = -353 score = 6.20625 sequence = CCTGCATACGTATGCAAA Site: position = -204 score = 6.06654 sequence = ATTGAATACGTATGCACA Gene: Shewmr7_2210: Predicted maltose-specific TonB-dependent receptor	* Shewanella baltica OS155 Site: position = -201 score = 5.99022 sequence = ATTGAATACGTATGCACT Site: position = -350 score = 6.17355 sequence = CCTGCATACGTATGCAGA Gene: Sbal_2288: Predicted maltose-specific TonB-dependent receptor	* Shewanella denitrificans OS217 Site: position = -205 score = 6.05528 sequence = ATTGAATACGTATGCATA Site: position = -354 score = 6.22531 sequence = ACTGCATACGTATGCAAA Gene: Sden_2029: Predicted maltose-specific TonB-dependent receptor	* Shewanella frigidimarina NCIMB 400 Site: position = -375 score = 6.20625 sequence = CCTGCATACGTATGCAAA Site: position = -226 score = 6.02573 sequence = GTTGAATACGTATGCATA Gene: Sfri_1787: Predicted maltose-specific TonB-dependent receptor	* Shewanella amazonensis SB2B Site: position = -206 score = 6.06654 sequence = TTTGAATACGTATGCACT Site: position = -356 score = 6.10124 sequence = GCTGCATACGTATGCACA Gene: Sama_1661: Predicted maltose-specific TonB-dependent receptor	* Shewanella loihica PV-4 Site: position = -192 score = 6.1316 sequence = TTTGAATACGTATGCATA Site: position = -343 score = 6.22531 sequence = ACTGCATACGTATGCAAA Gene: Shew_1888: Predicted maltose-specific TonB-dependent receptor	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -187 score = 6.05528 sequence = ATTGAATACGTATGCATA Site: position = -336 score = 5.8854 sequence = TCTGCATACGTATGTAAT Gene: swp_2671: Predicted maltose-specific TonB-dependent receptor	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -194 score = 6.1316 sequence = TTTGAATACGTATGCATA Site: position = -345 score = 6.19586 sequence = TCTGCATACGTATGCATA Gene: Swoo_2209: Predicted maltose-specific TonB-dependent receptor	Predicted maltose-specific TonB-dependent receptor
trpH	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_2030: Tryptophan halogenase	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1786: Tryptophan halogenase	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_2208: Tryptophan halogenase	Tryptophan halogenase
susA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2313: Neopullulanase (EC 3.2.1.135)	Shewanella sp MR-4 Gene: Shewmr4_2135: Neopullulanase (EC 3.2.1.135)	Shewanella sp MR-7 Gene: Shewmr7_2211: Neopullulanase (EC 3.2.1.135)	Shewanella baltica OS155 Gene: Sbal_2289: Neopullulanase (EC 3.2.1.135)	Shewanella denitrificans OS217 Gene: Sden_2031: Neopullulanase (EC 3.2.1.135)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1785: Neopullulanase (EC 3.2.1.135)	Shewanella amazonensis SB2B Gene: Sama_1660: Neopullulanase (EC 3.2.1.135)	Shewanella loihica PV-4 Gene: Shew_1887: Neopullulanase (EC 3.2.1.135)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_2674: Neopullulanase (EC 3.2.1.135)	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_2207: Neopullulanase (EC 3.2.1.135)	Neopullulanase (EC 3.2.1.135)
amy2	Shewanella oneidensis MR-1 Gene: SO_2156: Alpha-amylase (EC 3.2.1.1)	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2314: Alpha-amylase (EC 3.2.1.1)	Shewanella sp MR-4 Gene: Shewmr4_2136: Alpha-amylase (EC 3.2.1.1)	Shewanella sp MR-7 Gene: Shewmr7_2212: Alpha-amylase (EC 3.2.1.1)	Shewanella baltica OS155 Gene: Sbal_2290: Alpha-amylase (EC 3.2.1.1)	Shewanella denitrificans OS217 Gene: Sden_2032: Alpha-amylase (EC 3.2.1.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1784: Alpha-amylase (EC 3.2.1.1)	Shewanella amazonensis SB2B Gene: Sama_1659: Alpha-amylase (EC 3.2.1.1)	Shewanella loihica PV-4 Gene: Shew_1886: Alpha-amylase (EC 3.2.1.1)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_2675: Alpha-amylase (EC 3.2.1.1)	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_2206: Alpha-amylase (EC 3.2.1.1)	Alpha-amylase (EC 3.2.1.1)

CRON 5.
amyA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	* Shewanella denitrificans OS217 Site: position = -112 score = 6.02583 sequence = TATGCATACGTATTCATA Gene: Sden_1800: Cytoplasmic alpha-amylase (EC 3.2.1.1)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Cytoplasmic alpha-amylase (EC 3.2.1.1)

CRON 6.
amyA2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -178 score = 6.05528 sequence = AATGAATACGTATGCAAA Gene: Swoo_3416: alpha amylase catalytic region	alpha amylase catalytic region

CRON 7.
omp(Mal)2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -140 score = 6.03709 sequence = TGTGAATACGTATGCATA Gene: Sama_0286: Predicted maltose-specific TonB-dependent receptor	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -143 score = 5.99304 sequence = TATGAATACGTATGCAGC Gene: swp_3412: Predicted maltose-specific TonB-dependent receptor	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Predicted maltose-specific TonB-dependent receptor
pulA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_0287: Alpha-1,6-glucosidases, pullulanase-type	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3 Gene: swp_3411: Alpha-1,6-glucosidases, pullulanase-type	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Alpha-1,6-glucosidases, pullulanase-type

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MalR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --