Regulon of FadR in Shewanella loihica PV-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shew_2174
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Shewanellaceae
Statistics of regulated genes:
- Genes	7
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -91 Score: 5.4 Sequence: AACTGGCCTGACCAGTT Locus tag: Shew_3680 Name: SO4716 Funciton: Acetyltransferase, GNAT family
	Shew_3680	SO4716	Acetyltransferase, GNAT family
Position: -112 Score: 4.9 Sequence: TGATGGTCTGACCTGTT Locus tag: Shew_2426 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: Shew_2425 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	Shew_2426	fadI	FadI component of anaerobic fatty acid oxidation complex
	Shew_2425	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -133 Score: 4.6 Sequence: ATCTGGTCGGAGTTGTT Locus tag: Shew_2436 Name: fadL Funciton: Long-chain fatty acid transport protein
	Shew_2436	fadL	Long-chain fatty acid transport protein
Position: -52 Score: 4.5 Sequence: TTCTGGACTGACCAGTA Locus tag: Shew_0454 Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Shew_0454	SO0572	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -54 Score: 3.8 Sequence: CTCTGGTATGATCAGTT Locus tag: Shew_2174 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	Shew_2174	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -93 Score: 4.7 Sequence: CACAGGTCTGACCAGCA Locus tag: Shew_2108 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Shew_2108	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD